|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071357 ID=TCONS_00071357|Name=TCONS_00071357|organism=Clytia hemisphaerica|type=transcript|length=2392bpRun BLAST on NCBI protein sequence of TCONS_00071357-protein >TCONS_00071357-protein ID=TCONS_00071357-protein|Name=TCONS_00071357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp MSSDTRNLTIKWSGKEYKLEDVSLQLTVLELKNLIFEKTNVRPERQKLLTRun BLAST on NCBI transcript from alignment at scaffold_60:550202..601666- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071357 ID=TCONS_00071357|Name=TCONS_00071357|organism=Clytia hemisphaerica|type=transcript|length=51465bp|location=Sequence derived from alignment at scaffold_60:550202..601666- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:550202..601666- >TCONS_00071357 ID=TCONS_00071357|Name=TCONS_00071357|organism=Clytia hemisphaerica|type=CDS|length=9600bp|location=Sequence derived from alignment at scaffold_60:550202..601666- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071357 vs. Swiss-Prot (Human)
Match: UBCP1 (Ubiquitin-like domain-containing CTD phosphatase 1 OS=Homo sapiens GN=UBLCP1 PE=1 SV=2) HSP 1 Score: 368.237 bits (944), Expect = 4.791e-120 Identity = 191/313 (61.02%), Postives = 238/313 (76.04%), Query Frame = 2
Query: 302 LTIKWSGKEYKLEDVSLQLTVLELKNLIFEKTNVRPERQKLLTLKLKGKPATDDIKLSALTIKEGMKIMMMGSQEEKLAEVIAPPKEITENTVVDDFDXXXXXXXXXXXXXYLAKIQKRVDNYKIEELNAPREGKKLLVLDIDYTLFDHRSSAERGVELMRPFLHEFLTASYEHYDIVIWSATGMKWIKAKMEELGVTKNPAYKLMFMIDSGAMITLHTDRYGIMETKPLGVIWGKYPQ-YHKNNTIMFDDLRRNFLMNPTCGLKIRPFKNAHQNRDKDRELVKLTDYLLKIAELDSFESLDHNKWEKYLSRR 1237
+ +KW G+EY + +S TVL+LK + T V PERQKLL LK+KGKPA +D+KL AL +K KIMMMG++EE L +V+ PP + + D +E + +E+REE L KI +RV YK+E LN PREGKKLLVLD+DYTLFDHRS AE GVELMRP+LHEFLT++YE YDIVIWSAT MKWI+AKM+ELGV+ N YK+ FM+DS AMIT+HT R G+++ KPLGVIWGK+ + Y K NTIMFDD+ RNFLMNP GLKIRPF AH NRDKD+EL+KLT YL +IA+LD F L+H WE+YLS++
Sbjct: 5 IIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDI--EDEVVEVENREENLLKISRRVKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSEFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDFLDLNHKYWERYLSKK 315 The following BLAST results are available for this feature:
BLAST of TCONS_00071357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.