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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071348 ID=TCONS_00071348|Name=TCONS_00071348|organism=Clytia hemisphaerica|type=transcript|length=2896bp
GGAGAAATGAGTGTACTTTCCCGCCTATCGATCTTCGCAGACATAGTAGT
TGGCATGTCTTCTGGTTTATATTTTCATGAACATAATAACAGCGCCATGA
AGGTTTAACAAGTCTGATGGCATTGCGGTCACGAATGTATTAACACCTTA
TAGCGGAAATATGATGGTGACCTAAAACAGgcgttttatttataaaaaca
taaatatataGAGaaAATGACAGAACCTGAGGAAAACAAGAAATATCCGG
AGGAAATTCTATACCCAGGGGTGAGTTGTGAATAAAAGGAAGATACTGAG
TGATATTGGTTAATGACTTGGTATGGATCCTTTGGTATTCTACTGGCATA
CACTTTTTCGATCGTAgtcgccaattgccgcgcgggcatttttttgttcg
ttttaccATCCTAAAACCGTTCCTATTACGTTTCACCACGACACAGTAAT
TCATGGCATTCATGGCCGACTGAACGATGACAAACTTCATCTGACTGGTG
ATCTGATTTTCGAGATAGTTGTCGAAATAAGCTGTTAAAGGTTCGAATCA
CTAAAAATCCTATCAACCAGCCAATGTTTATTAGATAACTTCGTTCCTAG
GCCTCCTGGTAACCAGCAAATGATAATACTGTAATTGACTGATTGAATAA
TTACCGCGCAATAGACATTGATTTCATTAATTAGAGGATTGTATTACGTA
ATTTTACAATTCCTATAAACAATGAACAATAAACTCCAAATACGTCATAT
TACCTAAAATTTAATTATAACCAAATAAATCATTTTATCgattttgttta
tttatatatttgttAGAAACGAGGGCTGGTCAATGACTTCCTTAACATTT
CCTCTCAGGTAATTAAGATGAGAAATCCTTTAAGCAAACTCATTACTATA
CGCCCTGATTTTACAATTGAATTATCATTTTATGTCTTGTTTTTATGTGT
CTCATGTATGAATCTCTTCTTAGTGTTTTAATCCAGATAAAACTTGAAGA
ATCACTTTCGGTTAAAATAGTTACTTTCATCTTCCACGGACCAGTTCTAC
TTCACGGTTTACGTCTGAGGCTGAAGTTCGAGAATAGACAATGTACCGGG
GGGGGTTCTTAGGCAAAAGTGGGTGCTGGAAATGtgcagacggtaagggt
cgcttttttcaccttttaaagtctctctaaaggtcgcaaaaatcagaaaa
atttgaattagtcTCTCGAAGGGTTGGAAAATTCTCGGTTTTTGGAGGTT
ctatccgcacatacccctcatcctcCAACCCTAGTACACCCCCCATGGAA
CAAAGTTCTTCGCTTTATTTTCCCGGATTTTTCTAGGAATTGTAACCTTC
TGACATTTGTAACTGAATCtcgaagaaaactttttaaagctCTTTCTTTC
ACGTTGGTAATTTTTTGACAACAGCAAAATAACGAATAAATTCTTTTGAG
TCACGGATCAaaaattttgcaatattttttttgattcattCGCTCGATTC
ACGCGTTGATGGTGANGAAAActttttaaagctctttttttCACGTTGGT
AATTTTTTGATAACAGCAAAATAACGAATAAATTCTTCTGAGTCACGGAT
CAaaaattttgtaatattttttttgattcattCGTTCGATTCACGCGTTG
ATGGTGATAATTAAGATGGGAGAAAATGTACAGGAAGTCTCATTACTCCT
CCTACTCATATAAACAATATCATCGTATCTGaagaaaaattgtaattttg
atTAATCATGTGTGACTATTTCTTTCTTCATCATCAAATTTTTATACAAT
TTCGATTGTTTTTCCTTGTCCTTCTATCAAAAACGATTCGATTACGACGA
GACTCGATAAAAAAAGTCgtcatgatttttttcttgtgGTGATGACATAT
ACTAATTTGGTGTGGCTCGTCTGTTGatcaaatgtttaaaaaagcGGAGA
ATCAGGACTTTTCTCCTACTCTACTACCTATGGCAATCAACAGATCAGTA
TATCAAAATACAATtcattacatccctgtctcattgaCCTGAGAAAAGTC
TTTCCGCTAAGTGTGGACTAAATGGAAGTCTCTAActtcaatggggatga
aaaatATCTTTGGAATTTTGAATATTACAAAATAGGGATAATTTATCGGA
AACGTTAAGCTTTCTTCGGTATCGAATAAACTACAAATTCAAGAGATCAA
GGGCATCAATGATGAGTGAATTTTTGAATTCTTAGCGGTAAACCGTCAAA
ATAATTGtctaatgtttatgtttcttgGAGGTTGATCGAACCTTTCCTTT
CTTTGCAACAGCTTTCAATAGCTTCTTGGAACCATGTCTAGATATTGGTG
ACCTTAGATTTGCATTGACATTGGTTGATGGTTCAGGAGCAGGACTTCCA
ACATATTGTTTACGGTTGGCCATTTCGTTTTGAATAGCCTTAGCCTCCAT
TTCTTTATACTTTATCTCAGCATTAGCCATTTGTTTAACGTCTTCGTTTT
CCGCCTTTAATCGGGCGCCAACAGTCTCCTGATCTGTTGGTAAATGCTCA
GGAACCTCCATTAATGATGCAGAATCACTTTGTGACAGTTTAGTTTGTTG
TTCGTTCATTGCTGGCAAGTCACCAATAAATACGTTATTCTTTGAAGCTA
CCTTCTGATGTTCCAGTTGGTGTAATTCTTCACTTGCAAACCCTTCTACC
ATTGACTCGAAATCTTGTGATCCTTTTCCATTATCTTTGTGGAATATCTT
CTGATTCTTCGGTAACGTTTCACCAGCATTTCCAAACATGGAAGATGGTG
GCATGCTTGACAGTTCAGATTCCATTTCTCCCATTGTTGGCTTTCCAAAC
TTACCAACCACATCACCGACAGGAGGCTCTGCAGTTTGTGTTCTAA Run BLAST on NCBI transcript from alignment at scaffold_60:443107..447988- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071348 ID=TCONS_00071348|Name=TCONS_00071348|organism=Clytia hemisphaerica|type=transcript|length=4882bp|location=Sequence derived from alignment at scaffold_60:443107..447988- (Clytia hemisphaerica)
GGAGAAATGAGTGTACTTTCCCGCCTATCGATCTTCGCAGACATAGTAGT
TGGCATGTCTTCTGGTTTATATTTTCATGAACATAATAACAGCGCCATGA
AGGTTTAACAAGTCTGATGGCATTGCGGTCACGAATGTATTAACACCTTA
TAGCGGAAATATGATGGTGACCTAAAACAGGCGTTTTATTTATAAAAACA
TAAATATATAGAGGTATATTAATCTGTGGAATTGGATTTTCTGACCGAAA
GGTGTCTGTATGTATTTCCTGCTCTTGAAATCAGACTTTAATGCTTTGTT
AACGTTGTTGTTTAGGGAAGGGTGATGAAGATTCTAGTCGTTTGGTATTG
GGATAGAAATTTAATCTGACGTTTGATCGAGAGAGAGAATTTGACCAGAG
AGAATTTCTTTCATATCTTTTGGCGAATAATCATGACTTTTTAGAGGGAA
AATTTTCCAAGTTTCATCTAACTTCATCAGAGAAATTAAACTACCATGGC
TGATCGAACATTTTGAGTATCAGATGATTGGAAGGTCTCATAATGAGGAA
TGTGGTCGTAAATTTGCAGATTTGGCTGTGATTGTTTTGTGTGATGTTTT
CCTTCGAGGAGTGTCAAAAAGAGAAGTGGTATCTGATCTTGTGACAAGGT
GACCTTTATGTGAGAATTTCACACGATCTGATTTTTTTGAAATGATTTCA
CGAAGGAAAATGGAAAGTTTTTGAAGCTCTCATTTTGTAGCTGAATTCCT
CGCTAGACCGTAACCCCCCCCCCAAAAAAAAGATAGCTCTCTTTTTGTTT
GACGGGAGAGGATTTCTAAAATCATTATTGCTTTGGGTGATTCTGAATCT
TGTATTTAATCTGTTTACGACTTCATGTCACTATAGACAAAGATATAAAA
CAGATACTACATGTATTTCAGCACTTCAGTCGCCCTATAGAAAGCTCGAA
TATGATATTATACTGCAAACTATTGTATACTTTTTTTACTTCTATGTAGC
TTATTTCCCTTGATGTGACATTTTACAAGGCGCGTTCTCCTATTTCAGCA
ATGATTTTTGCACCTTTTTGCATCCTTCCTCTCATTCTTTCAATATAAAA
ATTTGAATGTTACCACACAGGCTCTTTCGATGGAGTAGTTTACCCAAAAA
TTTCTATACAGAATCCATATTACCCACAATTTTTAACTTTGTGTGAATTT
TTTTGCTTTTTGCGAAATAATTCAATAATTTTTCTACTTCGAACTTTTCT
AACTTTTTCAAAATAAGAACTTTTCTTAGATATAAGTTTGTTTTTCCAGA
AAAAAGGGTGGTATAAAAACCACGTTCAAAACCTCCTTACATGTAACGGT
TGTATGTTTTTGGTTTGTTAGGCCACTGTCCTTACAATTAAAACGTATTT
CGGACGTCCGAAAGACATCCATATAATGTTATATTTCGTCGCATTGTTAT
CAGAGTCAAAAATCAATGAATCGTTCTCTGTTAAAAAGGATGTATTTTGA
TTTTTTTTACCATTGTAGCAAAAATTTTAACCATTTTATTATGATATTTT
TCACAAGAATTTCTATGCCGTGTTTTGCGTTTTTTGAGTTCTTTTTGTTT
TTTTTGTTATCTTCATCTTGTGGTTGGCAGTTGTGGCTAGCCACATTCAG
CATTTACGAAAATGGAAGATAAAATCTTTTATGAGATTTCAATCGCTCCG
TTTCTTTCGTATTTTTCTTTTATACTATAGTCAATTGAGAAATTTTTGAC
TTTGTTTTCTATACGTCAAAAGTTACTCCCTTTTTATGGGGAGGGTCTTT
TCAGTAAAATATTTGCTCTACCAGCCTTCCAGTAAGAGTAGTAAGAGTAA
CAGATTCCAATCTACCTCAAATCTTAAGCGTCAACTGCTTTTCTCTCTCT
TAGTTTCATTGAAATATGTCATGCATTTTCCGTTCTATGACATATCTTCT
GTTCACTTTTAACACAATTTAAGGCACCCGGAAAATCATTGGTCATTTTG
AATACATAAATCGAGAATGTTTGACAAGTTTCTGAAAAATTGAATAAAAT
CGTCTAATACCCTATAAACCTTTGATGAACGAATCGCTAATTTTCTAAGG
AAACCCCAAATTTTTTTTATTTACAGAAAATGACAGAACCTGAGGAAAAC
AAGAAATATCCGGAGGAAATTCTATACCCAGGGGTGAGTTGTGAATAAAA
GGAAGATACTGAGTGATATTGGTTAATGACTTGGTATGGATCCTTTGGTA
TTCTACTGGCATACACTTTTTCGATCGTAGTCGCCAATTGCCGCGCGGGC
ATTTTTTTGTTCGTTTTACCATCCTAAAACCGTTCCTATTACGTTTCACC
ACGACACAGTAATTCATGGCATTCATGGCCGACTGAACGATGACAAACTT
CATCTGACTGGTGATCTGATTTTCGAGATAGTTGTCGAAATAAGCTGTTA
AAGGTTCGAATCACTAAAAATCCTATCAACCAGCCAATGTTTATTAGATA
ACTTCGTTCCTAGGCCTCCTGGTAACCAGCAAATGATAATACTGTAATTG
ACTGATTGAATAATTACCGCGCAATAGACATTGATTTCATTAATTAGAGG
ATTGTATTACGTAATTTTACAATTCCTATAAACAATGAACAATAAACTCC
AAATACGTCATATTACCTAAAATTTAATTATAACCAAATAAATCATTTTA
TCGATTTTGTTTATTTATATATTTGTTAGAAACGAGGGCTGGTCAATGAC
TTCCTTAACATTTCCTCTCAGGTAATTAAGATGAGAAATCCTTTAAGCAA
ACTCATTACTATACGCCCTGATTTTACAATTGAATTATCATTTTATGTCT
TGTTTTTATGTGTCTCATGTATGAATCTCTTCTTAGTGTTTTAATCCAGA
TAAAACTTGAAGAATCACTTTCGGTTAAAATAGTTACTTTCATCTTCCAC
GGACCAGTTCTACTTCACGGTTTACGTCTGAGGCTGAAGTTCGAGAATAG
ACAATGTACCGGGGGGGGTTCTTAGGCAAAAGTGGGTGCTGGAAATGTGC
AGACGGTAAGGGTCGCTTTTTTCACCTTTTAAAGTCTCTCTAAAGGTCGC
AAAAATCAGAAAAATTTGAATTAGTCTCTCGAAGGGTTGGAAAATTCTCG
GTTTTTGGAGGTTCTATCCGCACATACCCCTCATCCTCCAACCCTAGTAC
ACCCCCCATGGAACAAAGTTCTTCGCTTTATTTTCCCGGATTTTTCTAGG
AATTGTAACCTTCTGACATTTGTAACTGAATCTCGAAGAAAACTTTTTAA
AGCTCTTTCTTTCACGTTGGTAATTTTTTGACAACAGCAAAATAACGAAT
AAATTCTTTTGAGTCACGGATCAAAAATTTTGCAATATTTTTTTTGATTC
ATTCGCTCGATTCACGCGTTGATGGTGANGAAAACTTTTTAAAGCTCTTT
TTTTCACGTTGGTAATTTTTTGATAACAGCAAAATAACGAATAAATTCTT
CTGAGTCACGGATCAAAAATTTTGTAATATTTTTTTTGATTCATTCGTTC
GATTCACGCGTTGATGGTGATAATTAAGATGGGAGAAAATGTACAGGAAG
TCTCATTACTCCTCCTACTCATATAAACAATATCATCGTATCTGAAGAAA
AATTGTAATTTTGATTAATCATGTGTGACTATTTCTTTCTTCATCATCAA
ATTTTTATACAATTTCGATTGTTTTTCCTTGTCCTTCTATCAAAAACGAT
TCGATTACGACGAGACTCGATAAAAAAAGTCGTCATGATTTTTTTCTTGT
GGTGATGACATATACTAATTTGGTGTGGCTCGTCTGTTGATCAAATGTTT
AAAAAAGCGGAGAATCAGGACTTTTCTCCTACTCTACTACCTATGGCAAT
CAACAGATCAGTATATCAAAATACAATTCATTACATCCCTGTCTCATTGA
CCTGAGAAAAGTCTTTCCGCTAAGTGTGGACTAAATGGAAGTCTCTAACT
TCAATGGGGATGAAAAATATCTTTGGAATTTTGAATATTACAAAATAGGG
ATAATTTATCGGAAACGTTAAGCTTTCTTCGGTATCGAATAAACTACAAA
TTCAAGAGATCAAGGGCATCAATGATGAGTGAATTTTTGAATTCTTAGCG
GTAAACCGTCAAAATAATTGTCTAATGTTTATGTTTCTTGGAGGTTGATC
GAACCTTTCCTTTCTTTGCAACAGCTTTCAATAGCTTCTTGGAACCATGT
CTAGATATTGGTGACCTTAGATTTGCATTGACATTGGTTGATGGTTCAGG
AGCAGGACTTCCAACATATTGTTTACGGTTGGCCATTTCGTTTTGAATAG
CCTTAGCCTCCATTTCTTTATACTTTATCTCAGCATTAGCCATTTGTTTA
ACGTCTTCGTTTTCCGCCTTTAATCGGGCGCCAACAGTCTCCTGATCTGT
TGGTAAATGCTCAGGAACATCCATCAATGATGCAGAGTCACTTTGTGACA
GTTTATTTTGTTGTTCGTTCATNCGGTAAATGTTCAGGAACCTCCATTAA
TGATGCAGAATCACTTTGTGACAGTTTAGTTTGTTGTTCGTTCATTGCTG
GCAAGTCACCAATAAATACGTTATTCTTTGAAGCTACCTTCTGATGTTCC
AGTTGGTGTAATTCTTCACTTGCAAACCCTTCTACCATTGACTCGAAATC
TTGTGATCCTTTTCCATTATCTTTGTGGAATATCTTCTGATTCTTCGGTA
ACGTTTCACCAGCATTTCCAAACATGGAAGATGGTGGCATGCTTGACAGT
TCAGATTCCATTTCTCCCATTGTTGGCTTTCCAAACTTACCAACCACATC
ACCGACAGGAGGCTCTGCAGTTTGTGTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071348-exon-scaffold_60-1575043694:447776..447988 | TCONS_00071348-exon-scaffold_60-1575043694:447776..447988 | Clytia hemisphaerica | exon |
| TCONS_00071348-exon-scaffold_60-1575043694:443521..445862 | TCONS_00071348-exon-scaffold_60-1575043694:443521..445862 | Clytia hemisphaerica | exon |
| TCONS_00071348-exon-scaffold_60-1575043694:443107..443447 | TCONS_00071348-exon-scaffold_60-1575043694:443107..443447 | Clytia hemisphaerica | exon |
| TCONS_00071348-exon-scaffold_60-1510915933:447776..447988 | TCONS_00071348-exon-scaffold_60-1510915933:447776..447988 | Clytia hemisphaerica | exon |
| TCONS_00071348-exon-scaffold_60-1510915933:443521..445862 | TCONS_00071348-exon-scaffold_60-1510915933:443521..445862 | Clytia hemisphaerica | exon |
| TCONS_00071348-exon-scaffold_60-1510915933:443107..443447 | TCONS_00071348-exon-scaffold_60-1510915933:443107..443447 | Clytia hemisphaerica | exon |
| TCONS_00071348-exon-scaffold_60-1491911889:447776..447988 | TCONS_00071348-exon-scaffold_60-1491911889:447776..447988 | Clytia hemisphaerica | exon |
| TCONS_00071348-exon-scaffold_60-1491911889:443521..445862 | TCONS_00071348-exon-scaffold_60-1491911889:443521..445862 | Clytia hemisphaerica | exon |
| TCONS_00071348-exon-scaffold_60-1491911889:443107..443447 | TCONS_00071348-exon-scaffold_60-1491911889:443107..443447 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:443107..447988 - |
Blast
The following BLAST results are available for this feature:
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