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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071344 ID=TCONS_00071344|Name=TCONS_00071344|organism=Clytia hemisphaerica|type=transcript|length=1321bp
cagttttaaaattgttttgatttctttgatgaATACTGTTTTTAGGTAAA
TTTCAACAAACCAAATTAAAACCTTGTTTTTCATATACTGGTGAACGTCT
GTTGAcatatgttttattttttcagaattCAATTTGTAAAAGATACTCTT
CATAATCATAAAGCATACCACTCTCTGTATCAAACTTAAATTCATTCAGA
GATTCTGTTATACCATTTTTTTAGAAGATTGATTTTTCTTCAACAAAAGG
GTGAAGAAGCCGTATTGTTTTCGGTGGATTTGCAATAACCTTTACAACAA
ATGGATTTGATTTTAAGGTTGCAACGAATATCGAGTGTCGATACCACGGT
TCTTTAAATGTAAAAACTTCATTTGAAACGGTAACTTGTATGTGATTTGA
TAATGCCAAGCAGTAGACTCGGACGAACATGGTAGCTCCTAATCCAGCAA
AAAGTTCACCATCTCTCATTATTTTCGTTAATTTTAGCCATCTTTCGGCA
TAGGTATCTGGAAATATTATCGTAGAAAAGTTGTTATATAAATTAGCTAA
ACAAATCAAGAAATCCGAATCGTTTTTAGATGTGGTACTTTCCGCTTTCA
CCAACGACCAATTTTTGACATCTTCATGTTGATCAAAGTCGTGCTTGAAA
AGATGGGTTGTTAAATATGATGGCCGACGATATTGCTGATGAAGAGAACA
CGTGAAATGTTGAAGCCAGACCATTTTGAGAgcgaatgtttttaaaatgt
cgATATCTTTCGTGTGTTGGAGAATTTCTGTTTTACATGCCTTTTCTTTC
TGTATTGCCTCTGATAGTTGCTTTTCCATGATTTTGACTCTGTCAGTCCA
TTTACTCTCTTCCAACTTTTTCAACTTTGCATCTATTTTATTTACTTTAG
GCTCAAGGCCCTTAACAGctttttcattagacttttgAAGACTTTTCAGT
TGCTGAAGTTGTTCTTTTGTTATTTCATCCGTCTCTGTAGCTGTTTTTTC
ATACCTCTCAAAACGGCTGTTAATTCCAATCACGTTTTTGTTCATATTGT
CAGCTGGAGCTTAATACCAGCTGGCCACCCCATCGGAAAATGGCTCTACC
AAGACCAATATCACATAACGATCGATGATTAAACCTACGCAAATGCTGAA
ACATGCTCGAACCGCAACAAACATACAAATGAGATCCATGCGGCCCAAGA
CCAATATCTGTTACTTTATTTAAATCTAACGACATTCCATTGACATTCCG
TTGACAGCTATAAAAGCTGCAACTTAAACGAAGAAAGACGGAGATTGAAA
GAGACACGAATAGTGTATANN Run BLAST on NCBI transcript from alignment at scaffold_60:406690..408136- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071344 ID=TCONS_00071344|Name=TCONS_00071344|organism=Clytia hemisphaerica|type=transcript|length=1447bp|location=Sequence derived from alignment at scaffold_60:406690..408136- (Clytia hemisphaerica)
CAGTTTTAAAATTGTTTTGATTTCTTTGATGAATACTGTTTTTAGGTAAA
TTTCAACAAACCAAATTAAAACCTTGTTTTTCATATACTGGTGAACGTCT
GTTGACATATGTTTTATTTTTTCAGAATTCAATTTGTAAAAGATACTCTT
CATAATCATAAAGCATACCACTCTCTGTATCAAACTTAAATTCATTCAGA
GATTCTGTTATACCATTTTTTTAGAAGATTGATTTTTCTTCAACAAAAGG
GTGAAGAAGCCGTATTGTTTTCGGTGGATTTGCAATAACCTTTACAACAA
ATGGATTTGATTTTAAGGTTGTAACGAACATCGAGTGTCGATACCACGGT
TCTTTAAATGGAAAAACTTCATTTGAAACNTAAGGTTGCAACGAATATCG
AGTGTCGATACCACGGTTCTTTAAATGTAAAAACTTCATTTGAAACGGTA
ACTTGTATGTGATTTGATAATGCCAAGCAGTAGACTCGGACGAACATGGT
AGCTCCTAATCCAGCAAAAAGTTCACCATCTCTCATTATTTTCGTTAATT
TTAGCCATCTTTCGGCATAGGTATCTGGAAATATTATCGTAGAAAAGTTG
TTATATAAATTAGCTAAACAAATCAAGAAATCCGAATCGTTTTTAGATGT
GGTACTTTCCGCTTTCACCAACGACCAATTTTTGACATCTTCATGTTGAT
CAAAGTCGTGCTTGAAAAGATGGGTTGTTAAATATGATGGCCGACGATAT
TGCTGATGAAGAGAACACGTGAAATGTTGAAGCCAGACCATTTTGAGAGC
GAATGTTTTTAAAATGTCGATATCTTTCGTGTGTTGGAGAATTTCTGTTT
TACATGCCTTTTCTTTCTGTATTGCCTCTGATAGTTGCTTTTCCATGATT
TTGACTCTGTCAGTCCATTTACTCTCTTCCAACTTTTTCAACTTTGCATC
TATTTTATTTACTTTAGGCTCAAGGCCCTTAACAGCTTTTTCATTAGACT
TTTGAAGACTTTTCAGTTGCTGAAGTTGTTCTTTTGTTATTTCATCCGTC
TCTGTAGCTGTTTTTTCATACCTCTCAAAACGGCTGTTAATTCCAATCAC
GTTTTTGTTCATATTGTCAGCTGGAGCTTAATACCAGCTGGCCACCCCAT
CGGAAAATGGCTCTACCAAGACCAATATCACATAACGATCGATGATTAAA
ACTTACGAAAATGCTGAAACATGCTGAAATTATACCTTACATAACGATCG
ATGATTAAACCTACGCAAATGCTGAAACATGCTCGAACCGCAACAAACAT
ACAAATGAGATCCATGCGGCCCAAGACCAATATCTGTTACTTTATTTAAA
TCTAACGACATTCCATTGACATTCCGTTGACAGCTATAAAAGCTGCAACT
TAAACGAAGAAAGACGGAGATTGAAAGAGACACGAATAGTGTATANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071344-exon-scaffold_60-1575043694:407820..408136 | TCONS_00071344-exon-scaffold_60-1575043694:407820..408136 | Clytia hemisphaerica | exon |
| TCONS_00071344-exon-scaffold_60-1575043694:406956..407752 | TCONS_00071344-exon-scaffold_60-1575043694:406956..407752 | Clytia hemisphaerica | exon |
| TCONS_00071344-exon-scaffold_60-1575043694:406690..406896 | TCONS_00071344-exon-scaffold_60-1575043694:406690..406896 | Clytia hemisphaerica | exon |
| TCONS_00071344-exon-scaffold_60-1510915933:407820..408136 | TCONS_00071344-exon-scaffold_60-1510915933:407820..408136 | Clytia hemisphaerica | exon |
| TCONS_00071344-exon-scaffold_60-1510915933:406956..407752 | TCONS_00071344-exon-scaffold_60-1510915933:406956..407752 | Clytia hemisphaerica | exon |
| TCONS_00071344-exon-scaffold_60-1510915933:406690..406896 | TCONS_00071344-exon-scaffold_60-1510915933:406690..406896 | Clytia hemisphaerica | exon |
| TCONS_00071344-exon-scaffold_60-1491911889:407820..408136 | TCONS_00071344-exon-scaffold_60-1491911889:407820..408136 | Clytia hemisphaerica | exon |
| TCONS_00071344-exon-scaffold_60-1491911889:406956..407752 | TCONS_00071344-exon-scaffold_60-1491911889:406956..407752 | Clytia hemisphaerica | exon |
| TCONS_00071344-exon-scaffold_60-1491911889:406690..406896 | TCONS_00071344-exon-scaffold_60-1491911889:406690..406896 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:406690..408136 - |
Blast
The following BLAST results are available for this feature:
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