TCONS_00071343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071343
Unique NameTCONS_00071343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071343 ID=TCONS_00071343|Name=TCONS_00071343|organism=Clytia hemisphaerica|type=transcript|length=2772bp
CATTCGAGGAGAGTTTGAGATTGGGAATtcgagaaactttttttttgaaa
atagagGTCCAAGTAAATCTTTCTTTTAATATTTGGCAACAGCTAAATTG
ACTAAACAATTTCATACATATAAAAACTTATACAAAATCCGATGAAATCC
TATTTCCTGTGAAATAAACCCTTTTTGTTccataaaaataaaactgaaaa
aatcCCTTCCTTAATTTTCGAAGCCACAAGGGGAAACAAAAATACTATAA
GCTAAAGTATTTAGATTTACAAGACAATATCCTATACAAAAATTTCTGTG
TCTATTCGGTGTATCGATCTTAAATCTACACAGGCTTGAAAGAAGACTTA
TTCCAGGGGAAACGGATGGTAATcgtgaattaaaaaaatcaaaaaaagaa
aaataacttcTCAATAAAATATGCTAGTAAATATAATTATTGGTCAAAGG
TAATATGATGTTTCGATGGTCAAGCACCCAGTTCAAACAAGACAGCAGCT
AACAATGCCAAGACACTGGTATCGATCATTTGCGAGGTAGAAAGTGTAAG
AAGTTCTTCTGTGTATGGAGTAAGTGTACGTCGGTTGCATGGTATTTTGG
CGATAGATAAAAGGATGTTCACGGCACGACGTAATAAACTGATACTCGTG
CCGCAAATCTCCTCCGCGTTCAGACCAGGCTGTACGCGACCGCCGGATGA
TAGATAGTTCGAAGTATTCTTCTCAGCGTCGTATAAAAAGGTACAAATAT
TTCTAATGGCGGATTTCCGAGTGGCCAGCACCTTTGAAAATCGTTCGGAA
TTGGCTAAATTGTCTACTAAGATGATGGCAAACTCACGGTTAGGAATAAC
TTTTTTGTTAGCCATGTGGCGAACTAAAACGTCACCCATCTCTTGAATAA
CGCTATCATTAGGGTAACGCATAATGTCTTTAACGTTTTGATGATTGATT
GTCATTTTGGCCAGGGCTTCTATACAAAGACGTTGAGCTGATAGAGCATG
AGATCCGGGCGCAGTTGGAAGTGGATCAAGTGCTTGGGAAGACCCGCAAA
CAACCCAGTGAAGTAAACCATTAACTAGCGGTTCGCGAATATCATCACGA
ATTTGCTTCAAGTTTAAATGTCCACCGATATTGGCGAGTAAAACGAGCGT
GTTCTCACGAATTGAATATAAAGATTGCCACCACGTGTCACTGACATCAT
CACTCAATGCGTTATTGGGTACAGTTCTTTCTTCAAAACCCAGTTTGAAT
TGCGAATGGTCAGTAACTGCGTGTTCGTGTTTATAAAGTAAAATGAATGC
ACAAATGGAGAGAAGACCAGAATGATTTGCTAGCACCGAATCGTTACCTT
GGATAAAAGAGAGACTACGAAATACATTTGACATGGCAACACAGCGCTGT
AACAATGAATGTTTGTTGTCAGGGATACCGACGAATGCAGTACTCTGCTT
AATAACGCAATGTTCACTTTCAACGTTGCCTCGATTCTCGCGTTGTAGTC
GACGGTTCAAGTACTCAATGAAATCTTTCGAATCTttcaaatattgttcg
tcaCAAGGTATAATAAACTCGAGATCTTGTAAAATCTTGGTAATGATAGG
TGCTTTTTCCTCTTTCGACTCGTGCTCACATTCGTGCATGAGGTCGTCGA
TGATTTGCATACAACCCACGGGTGGTTCGGAACCTTCCTTCTCCACTTTA
TCCAGCTTCGTTTCAATGTCTGTTGTGGTCGGTGAAGGCGACTTAAGAAT
TAAATCTTTCTCAGGTTCTGTTTTTATACATGCCTTGCTGTCTTTTGCTA
GGGTTATCGATGTTGGAGATTTGACAAGTCGATCAGGTGACGGAGATTTA
ATACGGTTCTCGGGTGTCGGTGATTTGACCCGGTTATCGATTGTCGGAGA
TTTGACACGGTTCTCGGGTGTAGGAGATTTAACACGGTTATCGAGCGTCG
GAGACGTGACACGGTTCTCGGGCGTAGGAGATTTGATAAGGCGGTTAAGC
GTTAGAGATTTCACAGCACGGTTATTTTCTTTTGCGATTTTATCATTTGA
CTGTTCTAAAGTGACGTTGGTCCGTACTCTTTGTTCGTCTAGCTTACGTT
TCTTAGCTTCTTCAGTTTTCGTTACAACAGGGATACCTTTCGGAAAAGCT
TGAATGGTAAAGTCCCTGTTAGGGAAAGCTGTTTGAATATGCTGCGTATA
ATCTCCACCTCCTTCCTGCCAAAATTCTCGTCCAGAGTTTAAAGTCTCTT
TCATTCCACCAACGACGGCGTTCGAAGCGATATTCGACGTGTAACTACTT
TGGGCGTTTTTNATTTAAAGTCTCTTTCATTCCACCGACGACGGCGTTCG
AAGCGATATTCGACGTGTAACTACTTTGGGCGTTTTTGCAAACGCCTACC
CACAGATCAGTCAACTTATTATTGATCGTAAGACCTTCGTCGTTCGTATC
CGTAGTAGCTGATATAGGTATCTCAGTAAAAGAAAAATCGTCGAATAAGT
TACCCATGGAGCGTCGGTAATGGTCCATCAAAGTGTCTAATAAACCAGGT
AATTGTTTTAAATGAAAGTACGTTATAGTGTTATTATCAGCTAAAAGAAT
ATTCAGAGTATCGATGGCCCAAGTGCATTCCGAAACCAATCCCGATTTCA
ATGACATCATGATTCTCCATGCTTCGACAGGACCTGAAAAGAGAAGAGTT
GATTCGTCGAAAATCGAAAGCAGACCCTGGTGTATTTCTTCAAGTAAAGT
TTAACTATGCAAGTCGAACACA
Run BLAST on NCBI

transcript from alignment at scaffold_60:378222..381131-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071343 ID=TCONS_00071343|Name=TCONS_00071343|organism=Clytia hemisphaerica|type=transcript|length=2910bp|location=Sequence derived from alignment at scaffold_60:378222..381131- (Clytia hemisphaerica)
CATTCGAGGAGAGTTTGAGATTGGGAATTCGAGAAACTTTTTTTTTGAAA
ATAGAGGTCCAAGTAAATCTTTCTTTTAATATTTGGCAACAGCTAAATTG
ACTAAACAATTTCATACATATAAAAACTTATACAAAATCCGATGAAATCC
TATTTCCTGTGAAATAAACCCTTTTTGTTCCATAAAAATAAAACTGAAAA
AATCCCTTCCTTAATTTTCGAAGCCACAAGGGGAAACAAAAATACTATAA
GCTAAAGTATTTAGATTTACAAGACAATATCCTATACAAAAATTTCTGTG
TCTATTCGGTGTATCGATCTTAAATCTACACAGGCTTGAAAGAAGACTTA
TTCCAGGGGAAACGGATGGTAATCGTGAATTAAAAAAATCAAAAAAAGAA
AAATAACTTCTCAATAAAATATGCTAGTAAATATAATTATTGGTCAAAGG
TAATATGATGTTTCGATGGTCAAGCACCCAGTTCAAACAAGACAGCAGCT
AACAATGCCAAGACACTGGTATCGATCATTTGCGAGGTAGAAAGTGTAAG
AAGTTCTTCTGTGTATGGAGTAAGTGTACGTCGGTTGCATGGTATTTTGG
CGATAGATAAAAGGATGTTCACGGCACGACGTAATAAACTGATACTCGTG
CCGCAAATCTCCTCCGCGTTCAGACCAGGCTGTACGCGACCGCCGGATGA
TAGATAGTTCGAAGTATTCTTCTCAGCGTCGTATAAAAAGGTACAAATAT
TTCTAATGGCGGATTTCCGAGTGGCCAGCACCTTTGAAAATCGTTCGGAA
TTGGCTAAATTGTCTACTAAGATGATGGCAAACTCACGGTTAGGAATAAC
TTTTTTGTTAGCCATGTGGCGAACTAAAACGTCACCCATCTCTTGAATAA
CGCTATCATTAGGGTAACGCATAATGTCTTTAACGTTTTGATGATTGATT
GTCATTTTGGCCAGGGCTTCTATACAAAGACGTTGAGCTGATAGAGCATG
AGATCCGGGCGCAGTTGGAAGTGGATCAAGTGCTTGGGAAGACCCGCAAA
CAACCCAGTGAAGTAAACCATTAACTAGCGGTTCGCGAATATCATCACGA
ATTTGCTTCAAGTTTAAATGTCCACCGATATTGGCGAGTAAAACGAGCGT
GTTCTCACGAATTGAATATAAAGATTGCCACCACGTGTCACTGACATCAT
CACTCAATGCGTTATTGGGTACAGTTCTTTCTTCAAAACCCAGTTTGAAT
TGCGAATGGTCAGTAACTGCGTGTTCGTGTTTATAAAGTAAAATGAATGC
ACAAATGGAGAGAAGACCAGAATGATTTGCTAGCACCGAATCGTTACCTT
GGATAAAAGAGAGACTACGAAATACATTTGACATGGCAACACAGCGCTGT
AACAATGAATGTTTGTTGTCAGGGATACCGACGAATGCAGTACTCTGCTT
AATAACGCAATGTTCACTTTCAACGTTGCCTCGATTCTCGCGTTGTAGTC
GACGGTTCAAGTACTCAATGAAATCTTTCGAATCTTTCAAATATTGTTCG
TCACAAGGTATAATAAACTCGAGATCTTGTAAAATCTTGGTAATGATAGG
TGTTTTTTCCTCTTTCGACTCGTGCTCACATTCGTGCATGAGGTCGTCGA
TGATTTGCATACAACCCACGGGTGGTTCGGAACCTTCCTTCTCCACTTTA
TCCAGCTTCGTTTCAATGTCTGNTTTGGTAATGATAGGTGCTTTTTCCTC
TTTCGACTCGTGCTCACATTCGTGCATGAGGTCGTCGATGATTTGCATAC
AACCCACGGGTGGTTCGGAACCTTCCTTCTCCACTTTATCCAGCTTCGTT
TCAATGTCTGTTGTGGTCGGTGAAGGCGACTTAAGAATTAAATCTTTCTC
AGGTTCTGTTTTTATACATGCCTTGCTGTCTTTTGCTAGGGTTATCGATG
TTGGAGATTTGACAAGTCGATCAGGTGACGGAGATTTAATACGGTTCTCG
GGTGTCGGTGATTTGACCCGGTTATCGATTGTCGGAGATTTGACACGGTT
CTCGGGTGTAGGAGATTTAACACGGTTATCGAGCGTCGGAGACGTGACAC
GGTTCTCGGGCGTAGGAGATTTGATAAGGCGGTTAAGCGTTAGAGATTTC
ACAGCACGGTTATTTTCTTTTGCGATTTTATCATTTGACTGTTCTAAAGT
GACGTTGGTCCGTACTCTTTGTTCGTCTAGCTTACGTTTCTTAGCTTCTT
CAGTTTTCGTTACAACAGGGATACCTTTCGGAAAAGCTTGAATGGTAAAG
TCCCTGTTAGGGAAAGCTGTTTGAATATGCTGCGTATAATCTCCACCTCC
TTCCTGCCAAAATTCTCGTCCAGAGTTTAAAGTCTCTTTCATTCCACCAA
CGACGGCGTTCGAAGCGATATTCGACGTGTAACTACTTTGGGCGTTTTTN
ATTTAAAGTCTCTTTCATTCCACCGACGACGGCGTTCGAAGCGATATTCG
ACGTGTAACTACTTTGGGCGTTTTTGCAAACGCCTACCCACAGATCAGTC
AACTTATTATTGATCGTAAGACCTTCGTCGTTCGTATCCGTAGTAGCTGA
TATAGGTATCTCAGTAAAAGAAAAATCGTCGAATAAGTTACCCATGGAGC
GTCGGTAATGGTCCATCAAAGTGTCTAATAAACCAGGTAATTGTTTTAAA
TGAAAGTACGTTATAGTGTTATTATCAGCTAAAAGAATATTCAGAGTATC
GATGGCCCAAGTGCATTCCGAAACCAATCCCGATTTCAATGACATCATGA
TTCTCCATGCTTCGACAGGACCTGAAAAGAGAAGAGTTGATTCGTCGAAA
ATCGAAAGCAGACCCTGGTGTATTTCTTCAAGTAAAGTTTAACTATGCAA
GTCGAACACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044336XLOC_044336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071343-exon-scaffold_60-1575043694:379533..381131TCONS_00071343-exon-scaffold_60-1575043694:379533..381131Clytia hemisphaericaexon
TCONS_00071343-exon-scaffold_60-1575043694:378222..379394TCONS_00071343-exon-scaffold_60-1575043694:378222..379394Clytia hemisphaericaexon
TCONS_00071343-exon-scaffold_60-1510915933:379533..381131TCONS_00071343-exon-scaffold_60-1510915933:379533..381131Clytia hemisphaericaexon
TCONS_00071343-exon-scaffold_60-1510915933:378222..379394TCONS_00071343-exon-scaffold_60-1510915933:378222..379394Clytia hemisphaericaexon
TCONS_00071343-exon-scaffold_60-1491911889:379533..381131TCONS_00071343-exon-scaffold_60-1491911889:379533..381131Clytia hemisphaericaexon
TCONS_00071343-exon-scaffold_60-1491911889:378222..379394TCONS_00071343-exon-scaffold_60-1491911889:378222..379394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:378222..381131 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.50476	6.32493	3.18472	2.05227	18.2932	14.7979	9.34603	12.4703	5.49101	6.58197	6.98905	3.69246	5.06289	4.33721	3.40395	5.71031	6.41542	5.77447	5.98506	4.03646	4.66499	5.31322	16.3051	9.94327	5.03047	6.9887	3.99318	5.6613	18.5359	15.6864
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR033388BAF250_C
Blast
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BLAST of TCONS_00071343 vs. Swiss-Prot (Human)
Match: ARI1B (AT-rich interactive domain-containing protein 1B OS=Homo sapiens GN=ARID1B PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.058e-41
Identity = 105/313 (33.55%), Postives = 166/313 (53.04%), Query Frame = -3 
Query:  581 LQRENRGNVESEHCVIKQSTAFVGIPDNKHSLLQRCVAMSNVFRSLSFIQGNDSVLANHSGLLSICAFILLYKHEHAVTDHSQFKLGFEERTVPNNALSDDVSDTWWQSLYSIRENTLVLLANIGGHLNLKQIRDDIREPLVNGLLHWVVCGSSQALDPLPTAPGSHALSAQRLCIEALAKMTINHQNVKDIMRYPNDSVIQEMGDVLVRHMANKKVIPNREFAIILVDNLANSERF-SKVLATRKSAIRNICTFLYDA------EKNTSNYLSSGGRVQPGLNAEEICGTSISLLRRAVNILLSIAKIPCNR 1498
            L+ E R   E+  C I            + SL +RC+ +SN+ RSLSF+ GND+ ++ H GL+ I   ++L  HEH     +      EE      A S D  + WW  L  +R+NTLV LANI G L+L    + I  P+++GLLHW+VC S++A DP PT   +  LS QRL +E L K++I   NV  I+  P  S  ++    LVR++ ++K    RE ++ L+ NLA  +   ++ +A +K +I N+ +FL D       +++  N +     +QP      +   S+ ++ RA   LL++A++  NR
Sbjct: 1906 LEDEPRSRDETPLCTIAHW---------QDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKD--EWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDALAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLM----HMQP----PPLEPPSVDMMCRAAKALLAMARVDENR 2199
The following BLAST results are available for this feature:
BLAST of TCONS_00071343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARI1B3.058e-4133.55AT-rich interactive domain-containing protein 1B O... [more]
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