TCONS_00071342 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071342
Unique NameTCONS_00071342
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071342 ID=TCONS_00071342|Name=TCONS_00071342|organism=Clytia hemisphaerica|type=transcript|length=857bp
aagaaattttaaacCGCGTACGACGGAGGGACATAGTATGACGTCATAAT
AATCGAAAATCTGTACGGTACCGAATTTTGCTTACACTACCACCAACATC
AGCGTGCCAAAAAAGCCGACAAGGAAAATCAAACAGGaataaaacttttc
aacttCTTTACTTTCACAAAAGTTTTCACAATGCCCAAGAACAAAGGAAA
GGGAGGTAAAAATAGAAGAAGAGGAAAGAATGAGAACGAAACTGAAAAGA
GAGAATTGGTCTTCAAAGAAGAAGGACAAGAATATGCACAAGTTCTTAAA
ATGTTGGGAAACGGTCGTCTAGATGCCATGTGTTTTGATGGTACAAAAAG
GTTATGCCATATCCGGGGAAAACTGAGGAAGAAAGTTTGGATCAACACTG
GTGACATCATTTTGTTGGGCTTGAGAGATTACCAGGACAATAAAGCTGAT
GTTATCTTGAAATATACACCAGACGAAGCTAGAAACTTGAAAACATACGG
CGAATTGCCTGATAATGtgaaaattgaGTCGAACATTAACAACGAGGATG
CGAGTGGAGATATCGAATTCGAATTTCAAGATGACAGCGAGGAGGAAGAT
GATGACTTGGATGACATTGACAACATATAGATGGATAGGTGGCCTTGGCT
GATTCCATAAAATGTCGATATCCTCAGCATAATTCCAAGAAGATTTTGAT
AAATCGAATCTAAAGAACGATTATCATGAGAATTTTTGCTGATCTAGCAC
AATTGAGAGAAGGAGAAATGAGAAACGATTTTAAAAACGTAGTTGGATAA
AGTGGAGCTGGAATATCCACGTTCGAAGGTGTAAcatggaaattgaaaaa
aatgaNN
Run BLAST on NCBI

protein sequence of TCONS_00071342-protein

>TCONS_00071342-protein ID=TCONS_00071342-protein|Name=TCONS_00071342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MPKNKGKGGKNRRRGKNENETEKRELVFKEEGQEYAQVLKMLGNGRLDAM
CFDGTKRLCHIRGKLRKKVWINTGDIILLGLRDYQDNKADVILKYTPDEA
RNLKTYGELPDNVKIESNINNEDASGDIEFEFQDDSEEEDDDLDDIDNI
Run BLAST on NCBI

transcript from alignment at scaffold_60:312546..320043-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071342 ID=TCONS_00071342|Name=TCONS_00071342|organism=Clytia hemisphaerica|type=transcript|length=7498bp|location=Sequence derived from alignment at scaffold_60:312546..320043- (Clytia hemisphaerica)
AAGAAATTTTAAACCGCGTACGACGGAGGGACATAGTATGACGTCATAAT
AATCGAAAATCTGTACGGTACCGAATTTTGCTTACACTACCACCAACATC
AGCGTGCCAAAAAAGCCGACAAGGAAAATCAAACAGGAATAAAACTTTTC
AACTTCTTTACTTTCACANCCAAAAAAGCCGACAAGGAAAATCAAGCAGG
AAGAAAACTTTTCAACTTCTTTACTTTCACAAAAGTTTTCACAATGCCCA
AGAACAAAGGTATGTTTTTTATGATTATTTCATCATCAATTTTTTCTACA
ACTAGTGTCTATGTGTAAAGCGAGAGCACAAATTGCTAAGATAGCAGACA
TGCCAACTCTCACACATTGATTGACTGATTGAGCAGGTTGGCAGACGACC
CTGTGCCGCCGATGCACTGGACAGTCTGGTGTGTTTTGTCTGGTGCCAAA
AAGTATCCCTCAGCCACACCGGAAACCTTTTGTCCGGTGATATTTCCGGG
GGATAATTTTGTTAACTTCTGGACACTGGACAAAGTTTGTTTAAAAAAAT
TGTGTGCACTGGGACGCACCACCAGGCTTAAGTCTGGTGTTAAGATTGTC
CGGTGTTAAAACCTGTCCTCATCCAACACCGAACTTTGCGTGTCCTGTGT
TCGTAAAGTCCGGTGCGTCGACAGGGTCGTGTTGGCCACGTGCGTTTGGT
TTGGGAACGCGAACACGAACGCAAACTACCCATGTCTAAACTTTTCAATT
TATCTCCAGAACTAACAGATTTTTTGAAATTCTGTAAAAAGGTCTAAGTT
CCTGAATAGTTTTACTATGTCCTATGAAAAAATCATAAGCANTAAATTTG
AATCGTATCATCTAGGGAAAAGAACATTGAAAGAAAGTTGTAGATTGGTT
TCAAATTACCTCGAAAATTAAAGTCATTCGGACAGGTTTCTTCCTCTTTC
GTTTCGCCTTTGTTTTTGTTTTGATTTGAGAACGATAGAACGCGATTTTA
GCTATTTTACAGAACGATGTCATAGTTGATATACTTTAGGTACAACCAAT
ATCCTAGACTAGAAAATAGTATTTAGTGCAAATTTAATGTTAAAAATATA
CCTCCTTACCTATTTTCAAGCAATAAGATGAATTTTATGAATTAATAATA
TGTAATTTAATAAAAATAACATTATTTGAAAAACCTCCACTGACCTTTAA
ACGTTCTTGCTTTTTCCCGCCTTTTCTTTTAACAACACGTGCACATTTTT
GGCGGGAATGTCATTCATTTGCAGTGCACAAGCCAGCNACCTCCACTGAC
CTTTAAACGTTCTTGCTTTTTCCCGCCTTTTCTTTTAACAAAACGTGCAC
ATTTTTGGCGGGAATGTCATTCATTTGCTGTGCACAAGCTGAAAGCGAAC
GCAGAATGTCAACGGAGCCTCCAAGTAAAGTAGCTAAAATGACTGGATCT
GATACAATTTCAAGCACCACAGACAACACAGGTATATATTTATAATAAAA
GGTTTATATTCTCAACTTCAGTTGAGCTAAAATCTGAGAATGTCTGTCTG
TCACCTCAAGACTTAAAAAAAAAAAGTTGAATTCGGCTGAAATTTTGCAC
ACTTGTTCCTTCATACCGTCAACTGTTCTAACTTGGGACGATATCTGGCC
TGTATTTTCACTTACTGTTAAATCTTTTGACAACAAATTTGTTTTGATAA
TTGTTTTGAGTTACGTATCACTCCACCAAGTTTATCAATCATACTTTTTT
TCATAACATGTCACCACGTGCGTTTGGTTTGGGAACGCGAAACACGAACG
CAAACTACCCATGTCTAAACTTTTCAATATATCTCCAGAACTAACAGATT
TTTTGAAATTCTGTAAAAAGGTCTAAGTTCCTGAATAGTTTTATTTACTA
TGTCCTATGAAAAAATCATAAGCATCAGTCAAATACTCGTTTATCTATTT
AAGATTGAAGACAAAAATTTGCGAAGAAAAATAAACCTTGAGCACAAAAA
ATGCTTTTTTAAACACTATTTTCCACTGAAAAAAAAATAACTTTTACAGA
CTNTAAACACTTTTTTCCACCGAAAAACAAATAACTTTTACAGACTTACC
TTCCCCAAACATTGAAGAAGCCTCTACTAATTAAAGTAAATGAGATAAGA
TAAGACAAAACCTTAAAATCAACCAGAATTTACAACCTTTTGTCCAAAGA
AAAAGACGTGCTTTTCTCGCCGCCATTTTGTTTCCGAATGAGAATTCTAG
AGAATTCCATTCGTTTCCAGCTCCCGCGGTCTTTTTTCATCCAATCAGAT
CGCGCGATTTCGCTTTCTCTAGTCCAATAAGACTGCGGGATTTGAGTCAT
GTGACATCTCTATTAAAAACCCGCGCGAAATACAGGGGGTCACAAATAGA
AATACAGGGGGTCACACTACTGGCTACAGGAACTGAAAGCAAGCAATTAA
GGCCAATATTTTTGGTTTTTCTGAAGGACAAAAGGTATAGGAAGGTATAG
GAAGCTTTACTGAAAGAGGGATAAAGCTGGGACAATCTATTTGAAAGATA
TGGACATAAAAAAGGCACTTTTTTGGGTGATAATTAAGATTTTACTCAGA
AACTTTAAAATTCTCTTACCCCTGTCTCAGGCCCCCCTGATATGAGCAAG
GGAACCATGTTGGCGACCCCTACTGAAAATTTCAGATCAAAACAAACAAG
GAATTAATTCCTGTAACTCGAAGAAAATTGGAAAAAGCTGGTTTTTGACT
GCTTCTGATCCTTAAGTGCAGGTGGCGTTTGCGTAGGGTAAAATGGCAAA
ATGCGAAAATCGAATTTGGCAAAAAATTTTTGAAAAATGACCCTACAAGA
TTTGACTATATCTTTTTATTCCATGAAGAGATTAATTTCAAATAAAAATT
ATATTGACAATGAATGGGTAAGGTTTCTAGAAATCCAAACATAAATTGCA
TAGCTTTTACCAAAAAATAGCAAAGTTAAGCAAATTTTCAATCGATCCAG
GGATTGAATTAGCGTATCGCATTTCGCAATTCGCGATGCGTTTTTGGATT
ACTTTACAAGCTAAAAATTGAAAATTGATCCATTTTAGAATGCAAAAGCA
TGCTTATCAAAAAATTGCGATGCACTTTCTATCCCTTATTTCGATGCCTG
AGTTCATATCTTTAAGAGACTTCAAAAACCCACTGAGATTTTTTGAGGCT
ATAAACTAGACCTACTAAGGAAGCCTTGCTGAAAGTTTCAAAAAAATTTG
TTGTTGCAGCAAAAAGATACGCCATCTTGAATTTCACTCCAGATCTGCCA
AAATAGCTATTTTTGGCCATTTTTTACGGTTACACAAAGATGGAAATCCT
GAAAACGTTATTTTTTTGGCCAAAACCCACCAGTAAACCACTCCAGGTCA
AAGGTTTGCTTCAAAAAAGTCTCAAGGACTATCAGCAGCCAGCTAAAAGT
GCTTCCAAACCCAGATTATGCAAAGTCTGAACCCCCCTACAGGAGGTGTT
AAAGATTTTCGGGGGAAATTTTGGAGACTCAATTTGATTTTTTCTGATTC
CCTACAAAAAGTATGTGTACTTAAAGTAATGTACTTAAAAATAAAAATTC
ATTGGCTTTCAAAATCTGCTCCTCAGATTTTCGCTTAGGCTCTGGGGGCC
ATGTATATTTTCCAAATTGAATATTTCAAAATATTTCAAATTATTGCCAT
TGGATTTTTTTGCCCCAGGGCCCAGTCCCATTCAGTTTTGATTCTCGTTT
CTTTTGCTATATTTTTCAAATGCGATTGTTTTGATTTACAGCTGCCATCT
TTATAGCATAATAACAAAGCTGTTCTCATGTGTGTGCGCTTCCTGCACTA
GCATAGATAAGGTAAAACCTCAGGATAAGAGTAAACAAACATGGTACCAT
GGTTTCAGCCCACTTTTCTGGTGCCCCCATTGAAGCATGGTGCCCCCAAC
GAGTTAGGTCCCCTTGAAAAATTGCTTTGAGTTAGGTACCCCTATTCAGC
AGATAATTTCTTTGAATTGACACTTACTTTTGATACTTTTGATGGGTTTT
TTGAGTCTCTCAATCATCCAATTTGGAAATCCGATGATAAACCATTTCTC
TCGCACTGTTTGAATTCGCTCTCCTGTAGGGATAATAATTCGGGAGCAGT
GGTTCGTCCGGCAGTGTGGAAAGAAAAAGGTCAAGTTGTTTTTTAAATTT
AAAATTTTTGTGCAGTTTGTGATATTACGAATGTAGAATGGGAGAGAATT
GAAAAGCTTAGGTCCTTCTTCAGATAGTGAGCCTCTCCAAATGTTTTTCT
GTTTAGAATTTACTTCTTTAAGGTGGCATTTTCATCTGAGCCTCTGGTTT
TCNNTGGTGTCTCTTGGATGGTGACCATAGCTGTGAACAGTAATCAATGT
GAGGGACTGCCAATGTCTTCCATAGGGTCAGCATTACAGTAGGGTCCCTT
GTTTTGAAAGTCTGATATATCCATGAACTGATGCCTTGACTTTGTCGATT
ACATTTTCTATATGATTGTCATATGTCATACCCACATCTAAAGTGATCCC
AAGGTCTTTGACTGTAGTCTTGGTCTCTATCACCTTTTGGGTACCAGAGA
AGTATTCATTTCTACTATAATTGAGATGTTCAAATTTAAGTCCATTCAAT
TTCAGATTATTCAATCCAGTCCATTCATAGACTGTGTTCATGTCATCTTG
GAGCTGAATGATATCAGCATGGTTTTTGATTTCTTTCATTAGACGTGTAT
CATCAGCAAATGATGATAAGAAAGAGTGTAATATCTTTTTGTCAATATCT
TGTATCATTATCAGAAACAGTAGAATTGATACTTTTTGTTCTTTTGTCAT
TCCAAAAATCTTAAATGAATCTTAGTGAAACAGAGCCAAAAAAAATTATC
TGCTGAATGGACTTAACTCAAAGCAATTTCTCAAGGGGACCTAACTCGTT
GGGGGCACCTGAAAAGACGTTGTGTGAAAAATTTATTTTGGAGCTAAACA
AACACATTTTGCCTGCGAGGGGTTGGGCAAGTTGGTTTTCAGATTTTAAC
TCTACTTGGCTATCTTCTAGGCTATTACTTTAAAAGTACACTGTTAGATT
TCAGTGGATTGCACTATTGCTCGAGGAATGAAGGATTTCAAAAATTTAGG
CTACCAATCCACCAACCCATTTTTAAAGCTTCTAGGAACGAACCAAGCAA
ACAATAGACCTTATCGGAGTTTTTAATTTTTCTAAAAAAGCGATGCATTG
TGGGATTGTTTCGAGTGTATTAATTACAATAGAATTCCCTCGAGGAATTC
CTAAGAGATTTCTATTGTAATACACTCGAAACAATCCCACAATGCATTGC
TTTTTTAGAAAAATTAAAAACTCCGATAAGGTCTATTGGGCCTGTCCTAT
GGAGTAGTGCCACTATTGGGGTGCCACTTTCAGAATGTCAAAAAATAGGT
AGAAAATTAAGCTTAAGATCATTTTTCCTAAGTTCTTTTTTATTAAACCA
TAGGAAAGGGAGGTAAAAATAGAAGAAGAGGAAAGAATGAGAACGAAACT
GAAAAGAGAGAATTGGTCTTCAAAGAAGAAGGACAAGAATATGCACAAGT
TCTTAAAATGTTGGGAAACGGTCGTCTAGATGCCATGTGTTTTGATGGTA
CAAAAAGGTTATGCCATATCCGGGGAAAACTGAGGAAGAAAGTTTGGATC
AACACTGGTGACATCATTTTGTTGGGCTTGAGAGATTACCAGGTAAGAAT
TTCAGAAACAAAAAAGTCAAACATTTTAAACTTTGTATGCACATCAAATT
CTGTTCATTAAAAAATAGACACGCGGGTTTTGCTGATGTTTTTTTTCCAT
ACCGCAAAAAATACCCACATCAAAGTGCTTTTATCAAGGTAGGAAACCCT
GCCGATCCGTAACTATTTTAACCTTCCCTCCTTAGGACAATAAAGCTGAT
GTTATCTTGAAATATACACCAGACGAAGCTAGAAACTTGAAAACATACGG
CGAATTGCCTGATAATGGTATGTTAATTTTGCATGTTTCCTTCTGATTTT
TTGCTCTTCTATTTTTGGACCTACCTCGGAGGTCCTTTAAATTAACCTCT
GTTCGTTCGTTTGTTTGTTCGTTCGTCTACTATTACTACTTGCTTTTCTC
GGGATCTGCCTATTAATTTTTTCTGATGTAAAACGAGAGTACCCAAAAAG
TATATATTAAAATAAAAACTTGTTTAACATCTTTTTAGTCTCATTTTGTA
CTATTGCAGGGGGGGTCAACATTTATAATACCAACCCATAGCCCAAAAAC
CTGACTTTTGACCGTTTGAGCTAAGTTAACACCACCACCCCGAAATTGGT
ATCGATACCAACTTGAAAATCATAATTTTCAGAAAAAGGGGGGACCCACC
CCCTTATTTTGGTATCGATACCAACTTGAAAATCATAATTTTCAGAAAAA
GGGGGGACCCACCCCCTTATTTTGGTATCGATACCAACTTGAAAATCATA
ATTTTCAGAAAAAGGGGGTACCCACCCCCTTTATTTGGTATCAATACCAA
CATGGCTTCTTGAATTTGACAAAATATCATGGGACCCACTAATTTAGTAC
CAATTACCAATCTGACAAATTTGAGTTTAAAGCTGTTTAAAGGGGACCCA
CCCCCTCCCACACAAACAGGGTACTAAGAGAAACTCNTTGTTGTTCCTCT
CTTTTTCAGTGAAAATTGAGTCGAACATTAACAACGAGGATGCGAGTGGA
GATATCGAATTCGAATTTCAAGATGACAGCGAGGAGGAAGATGATGACTT
GGATGACGTAAGCAACTTTTTATGTTTGTGGGGATTTTCTTTCCTCGAAC
GTGTGGGGATGAGATGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGT
CGTTAGCCAGTAATAAAACAATTTCGTTACTTTTTCTAATGAACGCGTCA
TTTTTATTACTTCAAATGACCAATCATTAAGGTATCTTATTAAAACTCCA
TCTCATCTGAACGTGTGGTATTTTCGAACTACTCAAAGGACCAATTGAGC
GAATAGTGGAAAAATAAACTCCCTAGCGTCAAAAATCAGGATTTCTAAAA
AATGAAAAAAGGACTAGGTCCAGCTACTCACCCACGCAATAAATGTCTCA
GACTTTCAGCCAAAACTTGGCCTCGCTTTTGCGAAAAACTCGCCCTGGCA
CACAAATCCAAAACTCATTTCTTGAAGAAATAAAAATTATTTTATTCCTT
TCGCAGATTGACAACATATAGATGGATAGGTGGCCTTGGCTGATTCCATA
AAATGTCGATATCCTCAGCATAATTCCAAGAAGATTTTGATAAATCGAAT
CTAAAGAACGATTATCATGAGAATTTTTGCTGATCTAGCACAATTGAGAG
AAGGAGAAATGAGAAACGATTTTAAAAACGTAGTTGGATAAAGTGGAGCT
GGAATATCCACGTTCGAAGGTGTAACATGGAAATTGAAAAAAATGANN

Coding sequence (CDS) from alignment at scaffold_60:312546..320043-

>TCONS_00071342 ID=TCONS_00071342|Name=TCONS_00071342|organism=Clytia hemisphaerica|type=CDS|length=2250bp|location=Sequence derived from alignment at scaffold_60:312546..320043- (Clytia hemisphaerica)
ATTGACAACATATAGTGAAAATTGAGTCGAACATTAACAACGAGGATGCG
AGTGGAGATATCGAATTCGAATTTCAAGATGACAGCGAGGAGGAAGATGA
TGACTTGGATGACGACAATAAAGCTGATGTTATCTTGAAATATACACCAG
ACGAAGCTAGAAACTTGAAAACATACGGCGAATTGCCTGATAATGGAAAG
GGAGGTAAAAATAGAAGAAGAGGAAAGAATGAGAACGAAACTGAAAAGAG
AGAATTGGTCTTCAAAGAAGAAGGACAAGAATATGCACAAGTTCTTAAAA
TGTTGGGAAACGGTCGTCTAGATGCCATGTGTTTTGATGGTACAAAAAGG
TTATGCCATATCCGGGGAAAACTGAGGAAGAAAGTTTGGATCAACACTGG
TGACATCATTTTGTTGGGCTTGAGAGATTACCAGATGCCCAAGAACAAAG
ATTGACAACATATAGTGAAAATTGAGTCGAACATTAACAACGAGGATGCG
AGTGGAGATATCGAATTCGAATTTCAAGATGACAGCGAGGAGGAAGATGA
TGACTTGGATGACGACAATAAAGCTGATGTTATCTTGAAATATACACCAG
ACGAAGCTAGAAACTTGAAAACATACGGCGAATTGCCTGATAATGGAAAG
GGAGGTAAAAATAGAAGAAGAGGAAAGAATGAGAACGAAACTGAAAAGAG
AGAATTGGTCTTCAAAGAAGAAGGACAAGAATATGCACAAGTTCTTAAAA
TGTTGGGAAACGGTCGTCTAGATGCCATGTGTTTTGATGGTACAAAAAGG
TTATGCCATATCCGGGGAAAACTGAGGAAGAAAGTTTGGATCAACACTGG
TGACATCATTTTGTTGGGCTTGAGAGATTACCAGATGCCCAAGAACAAAG
ATTGACAACATATAGTGAAAATTGAGTCGAACATTAACAACGAGGATGCG
AGTGGAGATATCGAATTCGAATTTCAAGATGACAGCGAGGAGGAAGATGA
TGACTTGGATGACGACAATAAAGCTGATGTTATCTTGAAATATACACCAG
ACGAAGCTAGAAACTTGAAAACATACGGCGAATTGCCTGATAATGGAAAG
GGAGGTAAAAATAGAAGAAGAGGAAAGAATGAGAACGAAACTGAAAAGAG
AGAATTGGTCTTCAAAGAAGAAGGACAAGAATATGCACAAGTTCTTAAAA
TGTTGGGAAACGGTCGTCTAGATGCCATGTGTTTTGATGGTACAAAAAGG
TTATGCCATATCCGGGGAAAACTGAGGAAGAAAGTTTGGATCAACACTGG
TGACATCATTTTGTTGGGCTTGAGAGATTACCAGATGCCCAAGAACAAAG
ATTGACAACATATAGTGAAAATTGAGTCGAACATTAACAACGAGGATGCG
AGTGGAGATATCGAATTCGAATTTCAAGATGACAGCGAGGAGGAAGATGA
TGACTTGGATGACGACAATAAAGCTGATGTTATCTTGAAATATACACCAG
ACGAAGCTAGAAACTTGAAAACATACGGCGAATTGCCTGATAATGGAAAG
GGAGGTAAAAATAGAAGAAGAGGAAAGAATGAGAACGAAACTGAAAAGAG
AGAATTGGTCTTCAAAGAAGAAGGACAAGAATATGCACAAGTTCTTAAAA
TGTTGGGAAACGGTCGTCTAGATGCCATGTGTTTTGATGGTACAAAAAGG
TTATGCCATATCCGGGGAAAACTGAGGAAGAAAGTTTGGATCAACACTGG
TGACATCATTTTGTTGGGCTTGAGAGATTACCAGATGCCCAAGAACAAAG
ATTGACAACATATAGTGAAAATTGAGTCGAACATTAACAACGAGGATGCG
AGTGGAGATATCGAATTCGAATTTCAAGATGACAGCGAGGAGGAAGATGA
TGACTTGGATGACGACAATAAAGCTGATGTTATCTTGAAATATACACCAG
ACGAAGCTAGAAACTTGAAAACATACGGCGAATTGCCTGATAATGGAAAG
GGAGGTAAAAATAGAAGAAGAGGAAAGAATGAGAACGAAACTGAAAAGAG
AGAATTGGTCTTCAAAGAAGAAGGACAAGAATATGCACAAGTTCTTAAAA
TGTTGGGAAACGGTCGTCTAGATGCCATGTGTTTTGATGGTACAAAAAGG
TTATGCCATATCCGGGGAAAACTGAGGAAGAAAGTTTGGATCAACACTGG
TGACATCATTTTGTTGGGCTTGAGAGATTACCAGATGCCCAAGAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044335XLOC_044335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071342-exon-scaffold_60-1575043694:319877..320043TCONS_00071342-exon-scaffold_60-1575043694:319877..320043Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1575043694:319785..319813TCONS_00071342-exon-scaffold_60-1575043694:319785..319813Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1575043694:314302..314540TCONS_00071342-exon-scaffold_60-1575043694:314302..314540Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1575043694:314027..314108TCONS_00071342-exon-scaffold_60-1575043694:314027..314108Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1575043694:313237..313334TCONS_00071342-exon-scaffold_60-1575043694:313237..313334Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1575043694:312546..312787TCONS_00071342-exon-scaffold_60-1575043694:312546..312787Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1510915933:319877..320043TCONS_00071342-exon-scaffold_60-1510915933:319877..320043Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1510915933:319785..319813TCONS_00071342-exon-scaffold_60-1510915933:319785..319813Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1510915933:314302..314540TCONS_00071342-exon-scaffold_60-1510915933:314302..314540Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1510915933:314027..314108TCONS_00071342-exon-scaffold_60-1510915933:314027..314108Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1510915933:313237..313334TCONS_00071342-exon-scaffold_60-1510915933:313237..313334Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1510915933:312546..312787TCONS_00071342-exon-scaffold_60-1510915933:312546..312787Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1491911889:319877..320043TCONS_00071342-exon-scaffold_60-1491911889:319877..320043Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1491911889:319785..319813TCONS_00071342-exon-scaffold_60-1491911889:319785..319813Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1491911889:314302..314540TCONS_00071342-exon-scaffold_60-1491911889:314302..314540Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1491911889:314027..314108TCONS_00071342-exon-scaffold_60-1491911889:314027..314108Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1491911889:313237..313334TCONS_00071342-exon-scaffold_60-1491911889:313237..313334Clytia hemisphaericaexon
TCONS_00071342-exon-scaffold_60-1491911889:312546..312787TCONS_00071342-exon-scaffold_60-1491911889:312546..312787Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071342-proteinTCONS_00071342-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:312546..320043 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
344.86	369.282	140.276	105.174	357.721	282.644	429.951	445.714	366.913	319.564	305.433	288.348	309.932	345.393	251.701	265.144	287.898	286.028	181.227	225.355	301.46	294.037	283.762	278.457	312.459	318.137	362.923	389.137	277.376	269.573
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001253TIF_eIF-1A
IPR006196RNA-binding_domain_S1_IF1
IPR018104TIF_eIF-1A_CS
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
Blast
[Close]
BLAST of TCONS_00071342 vs. Swiss-Prot (Human)
Match: IF1AX (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.810e-50
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  256 LVFKEEGQEYAQVLKMLGNGRLDAMCFDGTKRLCHIRGKLRKKVWINTGDIILLGLRDYQDNKADVILKYTPDEARNLKTYGELPDNVKI 525
            LVFKE+GQEYAQV+KMLGNGRL+AMCFDG KRLCHIRGKLRKKVWINT DIIL+GLRDYQDNKADVILKY  DEAR+LK YGELP++ KI
Sbjct:   26 LVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKI 115
The following BLAST results are available for this feature:
BLAST of TCONS_00071342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1AX1.810e-5085.56Eukaryotic translation initiation factor 1A, X-chr... [more]
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