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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071341 ID=TCONS_00071341|Name=TCONS_00071341|organism=Clytia hemisphaerica|type=transcript|length=2461bp
gattcactcattaccaaatgctatcacagaaaaaatatttttgcttcagg
cttgatcaaaaataaaacttgaaaatatcgaaaaagtccaaaattaaCAA
ACTGCAAAGTCATTTAAACTTATTatattactcatttacagtcattatac
tcaaaagctagaacaaatccaattgaaacctgtttagactgatatgtacc
ccgggtattttctagctatgaagggcaaaaattaggaaagttttgctgtc
attttgatatggataccaactttctgaatcatattatttaaaaaaagggg
tacccgNATGAGAATTTTTGCTGATCTAGCACAATTGAGAGAAGGAGAAA
TGAGAAACGATTTTAAAAACGTAGTTGGATAAAGTGGAGCTGGAATATCC
ACGTTCGAAGGTGTAAcatggaaattaaaaaaaatgagcGATTCTTGAAA
ATGGGTTTGATCAAAAAACATAAGCAAACGAACAGGACTTTTAAAAATGA
ATCAATTTGAATCTCGGCTTCTcttttctaatttATTTTATTGTAGAATT
TACAATTTATTGCAGTTTAAAATTATTATGCTGAAACAATTTTTCTATTC
GACGTAATTAAACCGAAAAAACACGCTTTTATTTGCTTTATAGATTTGTT
TGCCCGAAAAANTtaaaccgaaaaaaaaaacgcttttattttctttatag
aTATGATTGCCCGAAAAAGTGTGGCCATGAAACcatcgagtttaaagccc
aaatggctagagtagaatctctaagcTATCCCaggaaagaaaaagtgaag
ccacttatttcccattcagaaCACACCGCTAGCAgtggattttactttca
attcagcgtttgtgtaaaaaccacgcgcgggcgttctgaaggggaaataa
gtggcttcatttcccaaccaggagtctcgagtcagTTTGGAAGTCAATAT
ATGAGAATCAGTTTGTTTATCTTTAATTTTTCATGTGTAAAAATGTGGTC
TACACTATTGTCAGCTAAGAAAAACTTCATCAtacaatttaaaatcaaat
caaatacttcaaaatttataaattaaGACGAAATGAACACTtataagaaa
acagaaaattgtGAGTCGCAATATACTTTGGCTATCAAGGTCCCGTTGAT
CTTTGAAAATTAGccagtttttggatttttggatgcttatttaaaagata
tgtgGGTAAATATTCATTTCATGTTTTGACAAATTGTAATGTGATTGTTG
CATAACCGGTATCGCCATTGATTATTTTTCGTCCGTCTGCTTGAAATATA
TCCTTCGCAATGAAACTTTGTCCATTGAAATCTCCCAAAACATTACTTGT
TTTGGTTTCAAAGTCATACTCTTGAATTGCTCCATCAAATGTAATCAATT
CTAATTCACTCGTTGTGAAGCTCTTCTTCTCTTTAAACTGGTGGTTGATC
TGAACTGTGTGAACGTTACCTACAATGATGCTAAGGAATGATAGCTGAGG
AACGGACCAAATTGTGATATTTTGGTTTACCGGTAAACTTCCGATATTTA
AGACGAAACTACCGTGATATTCACACATTCTTCCAGTATCACTTGTACAA
ATCATCTCCAATGTACCAATGAGATTATAGTTTACTAAAAAGGAAAAGAA
TATCTTCAGTGTATATAAATAACGAAATATTACTCAATAGCACACtgcta
tgcaaacgtcataattattacttttaacatttgaccgaaattcaatccca
caatccttttcatcttgattcgtaatgcgtgcaagttattacttttgtat
tgtccataagtgtaattgacttgcaaaagcaattaatgcaaaggatgatg
ggattaaaactcggacaaaatgtaattttgatgtctatttttagaatcac
tgcggtatgctattCAAAAGTAGTCataattttttggcaaaatgacaaaa
aatgcATCAACATATTGGGCATAGGACCTTAGTTAGCAAAATTTTCTCGG
GCGGAATATTATAAAAAATGGCAACACTAGGGTATATATTTTGGACTAAG
AAAACCGTACAACTCAACTAAGATACCGATACATCATAATATCTTTGATA
TTCATTTTACCTGTCTTATCTTCCATTTCGTCACCAACAATGGAAACCTA
AACATTAAAATACAAGAAATAGATAATAGATTGTTACACAAGATGATGTT
AATACctaaacatttttctttatagTCAGGCAGAATTAggtttttacttt
gaaaaatagTATATGGCTGAAATTTATGGCACAGAGGCTCCTTATCGGAA
ACGTTCGGTAAAACGCACATAGGTCATAGTCGTTATAAAAAAACCCGGTC
TGGCAATGTTtgattgttttagctttttgttcaattttcttttgttacaa
acaaaagggCTACATGGTgtagggtacgattttgaaagccataaTTCTGG
TAGCACATGCC Run BLAST on NCBI transcript from alignment at scaffold_60:308925..311568- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071341 ID=TCONS_00071341|Name=TCONS_00071341|organism=Clytia hemisphaerica|type=transcript|length=2644bp|location=Sequence derived from alignment at scaffold_60:308925..311568- (Clytia hemisphaerica)
GATTCACTCATTACCAAATGCTATCACAGAAAAAATATTTTTGCTTCAGG
CTTGATCAAAAATAAAACTTGAAAATATCGAAAAAGTCCAAAATTAACAA
ACTGCAAAGTCATTTAAACTTATTATATTACTCATTTACAGTCATTATAC
TCAAAAGCTAGAACAAATCCAATTGAAACCTGTTTAGACTGATATGTACC
CCGGGTATTTTCTAGCTATGAAGGGCAAAAATTAGGAAAGTTTTGCTGTC
ATTTTGATATGGATACCAACTTTCTGAATCATATTATTTAAAAAAAGGGG
TACCCGNATGAGAATTTTTGCTGATCTAGCACAATTGAGAGAAGGAGAAA
TGAGAAACGATTTTAAAAACGTAGTTGGATAAAGTGGAGCTGGAATATCC
ACGTTCGAAGGTGTAACATGGAAATTAAAAAAAATGAGCGATTCTTGAAA
ATGGGTTTGATCAAAAAACATAAGCAAACGAACAGGACTTTTAAAAATGA
ATCAATTTGAATCTCGGCTTCTCTTTTCTAATTTATTTTATAAATCTATA
ATATGTTTTTTTGCCTTTCTTTGGTAGTCTCCTTTTTGTCTTTTCCAAGT
TGCTTGATAGTTATACTGAACTTCATATTTTATTCATGAGTGATGAGAAA
CAGATTGAAAACACTTTTCAAAACATTTTGAAATTAAATGTTCTCTGTAG
CATGGTCATTATCTTACATTTTATTGTAGAATTTACAATTTATTGCAGTT
TAAAATTATTATGCTGAAACAATTTTTCTATTCGACGTAATTAAACCGAA
AAAACACGCTTTTATTTGCTTTATAGATTTGTTTGCCCGAAAAANTTAAA
CCGAAAAAAAAAACGCTTTTATTTTCTTTATAGATATGATTGCCCGAAAA
AGTGTGGCCATGAAACCATCGAGTTTAAAGCCCAAATGGCTAGAGTAGAA
TCTCTAAGCTATCCCAGGAAAGAAAAAGTGAAGCCACTTATTTCCCATTC
AGAACACACCGCTAGCAGTGGATTTTACTTTCAATTCAGCGTTTGTGTAA
AAACCACGCGCGGGCGTTCTGAAGGGGAAATAAGTGGCTTCATTTCCCAA
CCAGGAGTCTCGAGTCAGTTTGGAAGTCAATATATGAGAATCAGTTTGTT
TATCTTTAATTTTTCATGTGTAAAAATGTGGTCTACACTATTGTCAGCTA
AGAAAAACTTCATCATACAATTTAAAATCAAATCAAATACTTCAAAATTT
ATAAATTAAGACGAAATGAACACTTATAAGAAAACAGAAAATTGTGAGTC
GCAATATACTTTGGCTATCAAGGTCCCGTTGATCTTTGAAAATTAGCCAG
TTTTTGGATTTTTGGATGCTTATTTAAAAGATATGTGGGTAAATATTCAT
TTCATGTTTTGACAAATTGTAATGTGATTGTTGCATAACCGGTATCGCCA
TTGATTATTTTTCGTCCGTCTGCTTGAAATATATCCTTCGCAATGAAACT
TTGTCCATTGAAATCTCCCAAAACATTACTTGTTTTGGTTTCAAAGTCAT
ACTCTTGAATTGCTCCATCAAATGTAATCAATTCTAATTCACTCGTTGTG
AAGCTCTTCTTCTCTTTAAACTGGTGGTTGATCTGAACTGTGTGAACGTT
ACCTACAATGATGCTAAGGAATGATAGCTGAGGAACGGACCAAATTGTGA
TATTTTGGTTTACCGGTAAACTTCCGATATTTAAGACGAAACTACCGTGA
TATTCACACATTCTTCCAGTATCACTTGTACAAATCATCTCCAATGTACC
AATGAGATTATAGTTTACTAAAAAGGAAAAGAATATCTTCAGTGTATATA
AATAACGAAATATTACTCAATAGCACACTGCTATGCAAACGTCATAATTA
TTACTTTTAACATTTGACCGAAATTCAATCCCACAATCCTTTTCATCTTG
ATTCGTAATGCGTGCAAGTTATTACTTTTGTATTGTCCATAAGTGTAATT
GACTTGCAAAAGCAATTAATGCAAAGGATGATGGGATTAAAACTCGGACA
AAATGTAATTTTGATGTCTATTTTTAGAATCACTGCGGTATGCTATTCAA
AAGTAGTCATAATTTTTTGGCAAAATGACAAAAAATGCATCAACATATTG
GGCATAGGACCTTAGTTAGCAAAATTTTCTCGGGCGGAATATTATAAAAA
ATGGCAACACTAGGGTATATATTTTGGACTAAGAAAACCGTACAACTCAA
CTAAGATACCGATACATCATAATATCTTTGATATTCATTTTACCTGTCTT
ATCTTCCATTTCGTCACCAACAATGGAAACCTAAACATTAAAATACAAGA
AATAGATAATAGATTGTTACACAAGATGATGTTAATACCTAAACATTTTT
CTTTATAGTCAGGCAGAATTAGGTTTTTACTTTGAAAAATAGTATATGGC
TGAAATTTATGGCACAGAGGCTCCTTATCGGAAACGTTCGGTAAAACGCA
CATAGGTCATAGTCGTTATAAAAAAACCCGGTCTGGCAATGTTTGATTGT
TTTAGCTTTTTGTTCAATTTTCTTTTGTTACAAACAAAAGGGCTACATGG
TGTAGGGTACGATTTTGAAAGCCATAATTCTGGTAGCACATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071341-exon-scaffold_60-1575043694:311035..311568 | TCONS_00071341-exon-scaffold_60-1575043694:311035..311568 | Clytia hemisphaerica | exon |
| TCONS_00071341-exon-scaffold_60-1575043694:308925..310851 | TCONS_00071341-exon-scaffold_60-1575043694:308925..310851 | Clytia hemisphaerica | exon |
| TCONS_00071341-exon-scaffold_60-1510915933:311035..311568 | TCONS_00071341-exon-scaffold_60-1510915933:311035..311568 | Clytia hemisphaerica | exon |
| TCONS_00071341-exon-scaffold_60-1510915933:308925..310851 | TCONS_00071341-exon-scaffold_60-1510915933:308925..310851 | Clytia hemisphaerica | exon |
| TCONS_00071341-exon-scaffold_60-1491911889:311035..311568 | TCONS_00071341-exon-scaffold_60-1491911889:311035..311568 | Clytia hemisphaerica | exon |
| TCONS_00071341-exon-scaffold_60-1491911889:308925..310851 | TCONS_00071341-exon-scaffold_60-1491911889:308925..310851 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:308925..311568 - |
Blast
The following BLAST results are available for this feature:
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