TCONS_00071336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071336
Unique NameTCONS_00071336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071336 ID=TCONS_00071336|Name=TCONS_00071336|organism=Clytia hemisphaerica|type=transcript|length=1555bp
AACTCGGGTATGAAAGATGGATGAAACCATGATTCATCAACTCTAGAGAA
GCTTCCATATAAGATGGTCTCTAGAGTCCTTCATAACGTAGGAAATCGCT
TGAATAGCATACGTAATAACTTTTCGACTCTTCTTTGCGGCTCCAGAAGA
GCTTCGAGAGATGAAGATAATGTTCGATTAAGATTCGTCTGCAGATCTTG
TGAAGATCACCTGAATGATGTTGCTGGTAGCAGTGCAAAGATTTGTCAAG
ATACCACCATTAGCTGTTCTTTTGAAAATCTATTGGACGCCAGTACCAAT
GAAGTCAATGTACAACTGCTTGTCAACCAGTTCAATACATTTTACATTGA
TAAATCGCATGGTGAGAAAGCAAAGGACTCGCCAGACATTGCCGAGAGTT
ATGAAAACTGTGTTTTTCATGAGAGTGAGGAGCACCATGACAAAGTGAAA
AAACCTTTATTTGCACCGCCAAATCTTGATATCAACATAGATGAAAATAA
CCAAGATCAGTCTTTAATCGATACTCTCCCACAGCACTATTACGGAAATG
CAGATCACGAAAGTGTTTTCACACAACACGCATCAGAGGGATGCGTGGAA
TTTGCAGATAGTGATAGTGAGCACGAATTATATATCTGGGCAGACAACAA
TCTTCCCTTATTAGATGAAATCGACAAAGAACTTGAGAAACGCAATCTTG
CTGACATAGCTAATGAGTTGTTGAGaaatGATTACGAAGATTTAGAGGTT
ATCACAGAGGAACCTTCTGCCAAATTAATCAACAATATGCCCGTTGAACA
AGATGAAGCCATGTTAATCACACAAAGAAACCAAGAGAATTCTCGAAAAG
ACCAGGAAAGGTTTaccaacaaaaaagaaaaaatgaagcattTGCAACAA
GAACTTTATTCTAATTCTTCAATGTTGAGCCACAATGGAATCTTATCTGA
ATTTTTCGTTGACATTTACAAAACGCCAGATGTAACAGATTTCATTGGCT
GCATTTCAACAATGATTGAGAAACATACATGCTCTCTTGCAGAAGGAAAG
TACGGTCCAGATGCAAAGATTTATCAAGACTTATTTGATGACTTAGTTAT
GCCTTTGATGCGCAAGTATTTTGACTTGGATGGAGATATTTTGTTGCGTG
CAGCAATAAAGGTTGCCAATGATTTAAAGAAGAGTGGCAAATTGTAAACc
agaatttttagaaaaaggaGTGCAAATTTAAAATGGGCCAGTGTAGAAGA
CCATAAAACATTTCCCAAAAAAGAGGAACAAATTATTCATATTTAAGGAA
ATTCAATCAATTGAATGAACATTATCATGGAAAGTGCTCAATACGTTAAC
GATCGCGTAAGCGTGAAACAGACTGAAGTAtctatgttttaatttttgaa
gaaaaataaatattttaatattggATTGATTGacataaaattttacttta
aagcttttttcacatgtacgtaaaattttacttagcCGTTTAGCCGTATG
TCCTACTTATTGAGATTATGTTACGTAGACTAAACAGAGGATAAACTTAT
CTGAA
Run BLAST on NCBI

protein sequence of TCONS_00071336-protein

>TCONS_00071336-protein ID=TCONS_00071336-protein|Name=TCONS_00071336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MVSRVLHNVGNRLNSIRNNFSTLLCGSRRASRDEDNVRLRFVCRSCEDHL
NDVAGSSAKICQDTTISCSFENLLDASTNEVNVQLLVNQFNTFYIDKSHG
EKAKDSPDIAESYENCVFHESEEHHDKVKKPLFAPPNLDINIDENNQDQS
LIDTLPQHYYGNADHESVFTQHASEGCVEFADSDSEHELYIWADNNLPLL
DEIDKELEKRNLADIANELLRNDYEDLEVITEEPSAKLINNMPVEQDEAM
LITQRNQENSRKDQERFTNKKEKMKHLQQELYSNSSMLSHNGILSEFFVD
IYKTPDVTDFIGCISTMIEKHTCSLAEGKYGPDAKIYQDLFDDLVMPLMR
KYFDLDGDILLRAAIKVANDLKKSGKL
Run BLAST on NCBI

transcript from alignment at scaffold_60:214179..216095-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071336 ID=TCONS_00071336|Name=TCONS_00071336|organism=Clytia hemisphaerica|type=transcript|length=1917bp|location=Sequence derived from alignment at scaffold_60:214179..216095- (Clytia hemisphaerica)
AACTCGGGTATGAAAGATGGATGAAACCATGATTCATCAACTCTAGAGAA
GCTTCCATATAAGATGGTCTCTAGAGTCCTTCATAACGTAGGAAATCGCT
TGAATAGCATACGTAATAACTTTTCGACTCTTCTTTGCGGCTCCAGAAGA
GCTTCGAGAGATGAAGATAATGTTCGATTAAGATTCGTCTGCAGATCTTG
TGAAGATCACCTGAATGATGTTGCTGGTAGCAGTGCAAAGATTTGTCAAG
ATACCACCATTAGCTGTTCTTTTGAAAATCTATTGGACGCCAGTACCAAT
GAAGTCAATGTACAACTGCTTGTCAACCAGTTCAATACATTTTACATTGA
TAAATCGCATGGTGAGAAAGCAAAGGACTCGCCAGACATTGCCGAGAGTT
ATGAAAACTGTGTTTTTCATGAGAGTGAGGAGCACCATGACAAAGTGAAA
AAACCTTTATTTGCACCGCCAAATCTTGATATCAACATAGATGAAAATAA
CCAAGATCAGTCTTTAATCGATACTCTCCCACAGCACTATTACGGAAATG
CAGATCACGAAAGTGTTTTCACACAACACGCATCAGAGGGATGCGTGGAA
TTTGCAGATAGTGATAGTGAGCACGAATTATATATCTGGGCAGACAACAA
TCTTCCCTTATTAGATGAAATCGACAAAGAACTTGAGAAACGCAATCTTG
CTGACATAGCTAATGAGTTGTTGAGGTAATATTTTATCTGCACGAAAATA
TATTTATTCCTACTGTCAGTACACTTCACAAAGCACTTCCTTAGGAAGCC
TCCTTATATACAGGCAAAATTCAGAAACGTAGTACCCGGATGTCGAACAG
TTTTTCTACTTTCTTTAAAAATTTTATACATTATTCAAAGTGGTACTTCA
AATATATTCCCTTTTGTAATATAGTAGGAAAGTGCGTTTCTTATGCTGAC
AAAGCAAAATTAATAAATAAAACTATTTGCGGTCATGTGGTACAGAAGGG
AGAGAAAGTTGTTTTAACTTTTGTTTGAAATACAATCAAAAGGTTGTAGT
ACAATTAGGTAAAAATTCAGTTTAATTTGATTTTCAGAAATGATTACGAA
GATTTAGAGGTTATCACAGAGGAACCTTCTGCCAAATTAATCAACAATAT
GCCCGTTGAACAAGATGAAGCCATGTTAATCACACAAAGAAACCAAGAGA
ATTCTCGAAAAGACCAGGAAAGGTTTACCAACAAAAAAGAAAAAATGAAG
CATTTGCAACAAGAACTTTATTCTAATTCTTCAATGTTGAGCCACAATGG
AATCTTATCTGAATTTTTCGTTGACATTTACAAAACGCCAGATGTAACAG
ATTTCATTGGCTGCATTTCAACAATGATTGAGAAACATACATGCTCTCTT
GCAGAAGGAAAGTACGGTCCAGATGCAAAGATTTATCAAGACTTATTTGA
TGACTTAGTTATGCCTTTGATGCGCAAGTATTTTGACTTGGATGGAGATA
TTTTGTTGCGTGCAGCAATAAAGGTTGCCAATGATTTAAAGAAGAGTGGC
AAATTGTAAACCAGAATTTTTAGAAAAAGGAGTGCAAATTTAAAATGGGC
CAGTGTAGAAGACCATAAAACATTTCCCAAAAAAGAGGAACAAATTATTC
ATATTTAAGGAAATTCAATCAATTGAATGAACATTATCATGGAAAGTGCT
CAATACGTTAACGATCGCGTAAGCGTGAAACAGACTGAAGTATCTATGTT
TTAATTTTTGAAGAAAAATAAATATTTTAATATTGGATTGATTGACATAA
AATTTTACTTTAAAGCTTTTTTCACATGTACGTAAAATTTTACTTAGCCG
TTTAGCCGTATGTCCTACTTATTGAGATTATGTTACGTAGACTAAACAGA
GGATAAACTTATCTGAA

Coding sequence (CDS) from alignment at scaffold_60:214179..216095-

>TCONS_00071336 ID=TCONS_00071336|Name=TCONS_00071336|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_60:214179..216095- (Clytia hemisphaerica)
AAATGATTACGAAGATTTAGAGGTTATCACAGAGGAACCTTCTGCCAAAT
TAATCAACAATATGCCCGTTGAACAAGATGAAGCCATGTTAATCACACAA
AGAAACCAAGAGAATTCTCGAAAAGACCAGGAAAGGTTTACCAACAAAAA
AGAAAAAATGAAGCATTTGCAACAAGAACTTTATTCTAATTCTTCAATGT
TGAGCCACAATGGAATCTTATCTGAATTTTTCGTTGACATTTACAAAACG
CCAGATGTAACAGATTTCATTGGCTGCATTTCAACAATGATTGAGAAACA
TACATGCTCTCTTGCAGAAGGAAAGTACGGTCCAGATGCAAAGATTTATC
AAGACTTATTTGATGACTTAGTTATGCCTTTGATGCGCAAGTATTTTGAC
TTGGATGGAGATATTTTGTTGCGTGCAGCAATAAAGGTTGCCAATGATTT
AAAGAAGAGTGGCAAATTGTAAATGGTCTCTAGAGTCCTTCATAACGTAG
GAAATCGCTTGAATAGCATACGTAATAACTTTTCGACTCTTCTTTGCGGC
TCCAGAAGAGCTTCGAGAGATGAAGATAATGTTCGATTAAGATTCGTCTG
CAGATCTTGTGAAGATCACCTGAATGATGTTGCTGGTAGCAGTGCAAAGA
TTTGTCAAGATACCACCATTAGCTGTTCTTTTGAAAATCTATTGGACGCC
AGTACCAATGAAGTCAATGTACAACTGCTTGTCAACCAGTTCAATACATT
TTACATTGATAAATCGCATGGTGAGAAAGCAAAGGACTCGCCAGACATTG
CCGAGAGTTATGAAAACTGTGTTTTTCATGAGAGTGAGGAGCACCATGAC
AAAGTGAAAAAACCTTTATTTGCACCGCCAAATCTTGATATCAACATAGA
TGAAAATAACCAAGATCAGTCTTTAATCGATACTCTCCCACAGCACTATT
ACGGAAATGCAGATCACGAAAGTGTTTTCACACAACACGCATCAGAGGGA
TGCGTGGAATTTGCAGATAGTGATAGTGAGCACGAATTATATATCTGGGC
AGACAACAATCTTCCCTTATTAGATGAAATCGACAAAGAACTTGAGAAAC
GCAATCTTGCTGACATAGCTAATGAGTTGTTGAGAAATGATTACGAAGAT
TTAGAGGTTATCACAGAGGAACCTTCTGCCAAATTAATCAACAATATGCC
CGTTGAACAAGATGAAGCCATGTTAATCACACAAAGAAACCAAGAGAATT
CTCGAAAAGACCAGGAAAGGTTTACCAACAAAAAAGAAAAAATGAAGCAT
TTGCAACAAGAACTTTATTCTAATTCTTCAATGTTGAGCCACAATGGAAT
CTTATCTGAATTTTTCGTTGACATTTACAAAACGCCAGATGTAACAGATT
TCATTGGCTGCATTTCAACAATGATTGAGAAACATACATGCTCTCTTGCA
GAAGGAAAGTACGGTCCAGATGCAAAGATTTATCAAGACTTATTTGATGA
CTTAGTTATGCCTTTGATGCGCAAGTATTTTGACTTGGATGGAGATATTT
TGTTGCGTGCAGCAATAAAGGTTGCCAATGATTTAAAGAAGAGTGGCAAA
TTGTAAATGGTCTCTAGAGTCCTTCATAACGTAGGAAATCGCTTGAATAG
CATACGTAATAACTTTTCGACTCTTCTTTGCGGCTCCAGAAGAGCTTCGA
GAGATGAAGATAATGTTCGATTAAGATTCGTCTGCAGATCTTGTGAAGAT
CACCTGAATGATGTTGCTGGTAGCAGTGCAAAGATTTGTCAAGATACCAC
CATTAGCTGTTCTTTTGAAAATCTATTGGACGCCAGTACCAATGAAGTCA
ATGTACAACTGCTTGTCAACCAGTTCAATACATTTTACATTGATAAATCG
CATGGTGAGAAAGCAAAGGACTCGCCAGACATTGCCGAGAGTTATGAAAA
CTGTGTTTTTCATGAGAGTGAGGAGCACCATGACAAAGTGAAAAAACCTT
TATTTGCACCGCCAAATCTTGATATCAACATAGATGAAAATAACCAAGAT
CAGTCTTTAATCGATACTCTCCCACAGCACTATTACGGAAATGCAGATCA
CGAAAGTGTTTTCACACAACACGCATCAGAGGGATGCGTGGAATTTGCAG
ATAGTGATAGTGAGCACGAATTATATATCTGGGCAGACAACAATCTTCCC
TTATTAGATGAAATCGACAAAGAACTTGAGAAACGCAATCTTGCTGACAT
AGCTAATGAGTTGTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044331XLOC_044331Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071336-proteinTCONS_00071336-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071336-exon-scaffold_60-1575043694:215371..216095TCONS_00071336-exon-scaffold_60-1575043694:215371..216095Clytia hemisphaericaexon
TCONS_00071336-exon-scaffold_60-1575043694:214179..215008TCONS_00071336-exon-scaffold_60-1575043694:214179..215008Clytia hemisphaericaexon
TCONS_00071336-exon-scaffold_60-1510915933:215371..216095TCONS_00071336-exon-scaffold_60-1510915933:215371..216095Clytia hemisphaericaexon
TCONS_00071336-exon-scaffold_60-1510915933:214179..215008TCONS_00071336-exon-scaffold_60-1510915933:214179..215008Clytia hemisphaericaexon
TCONS_00071336-exon-scaffold_60-1491911889:215371..216095TCONS_00071336-exon-scaffold_60-1491911889:215371..216095Clytia hemisphaericaexon
TCONS_00071336-exon-scaffold_60-1491911889:214179..215008TCONS_00071336-exon-scaffold_60-1491911889:214179..215008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:214179..216095 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0263579	0.0257031	0.0298438	0.0583949	0.106635	0.0561764	0.169436	0.253799	0.133268	0.192586	0	0.0351084	8.09877	5.31583	0.0149669	0.0963706	0	0.0405616	2.12945	11.3175	0.0255005	0	0.0304934	0.0274757	0.0282993	0.0252565	0.144568	0.115715	0.0585104	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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