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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071334 ID=TCONS_00071334|Name=TCONS_00071334|organism=Clytia hemisphaerica|type=transcript|length=2574bpRun BLAST on NCBI transcript from alignment at scaffold_60:169275..177729- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071334 ID=TCONS_00071334|Name=TCONS_00071334|organism=Clytia hemisphaerica|type=transcript|length=8455bp|location=Sequence derived from alignment at scaffold_60:169275..177729- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071334 vs. Swiss-Prot (Human)
Match: KDM1A (Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A PE=1 SV=2) HSP 1 Score: 772.696 bits (1994), Expect = 0.000e+0 Identity = 390/673 (57.95%), Postives = 481/673 (71.47%), Query Frame = 3
Query: 171 LEGSAFGARLPSDQMTAHEASCFQDISQGSTANQKKFLYIRNRIIQCWLSNPREELIVEHALAKIEPPFHDDPILTKRIHAFLDRYGSINIGVYKFHRSPPVLKNAPKILVIGAGMSGLTASRQLKSFGFEVVTLEARERVGGRVATFRQGPFIADLGAMVVTGLGGNPVTVISNQVDVKLTKIRQRCPLYECNGQ--------MVRKDKDELVER--------EFNRLLESTSYLSHVLG---------------------------FNALFQKPLSLGNAIELV------------IKDVTDEFTVRSKQRDLLQLFKEHDGYAEKQKELETKIKDYEENPPSDVYLSLRDRQILDWHLANLEFANATPLSALSLKHWDQDDDFEFTGSHMTVSNGFSCIPAALAEGLDIRLNTAVRNVKYTRQGVEVVGVTNKNGIPTSQTF--KADAVLCTLPLGVLKHKNPPSIHFNPPLPDWKTGAMDRMGFGNLNKVILCFDRVFWNSSTNLFGHVASTTSNRGELFLFWSIYKAPVLLALVAGEAANKLETYSDDVIIGRALTVLKGIFGSNNVPQPKETIVTRWKSDEWSRGSYSFVAAGSSGNDYDIMAAXXXXXXXXXXXXXXGSNIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGLPYDLNK 2018
+EG+AF +RLP D+MT+ EA+CF DI G QK FL+IRNR +Q WL NP+ +L E L ++E P++ D +L R+H++L+R+G IN G+YK + P K K+++IG+G+SGL A+RQL+SFG +V LEAR+RVGGRVATFR+G ++ADLGAMVVTGLGGNP+ V+S QV+++L KI+Q+CPLYE NGQ MV ++ + L+E +FN L L L L K ++L I+ + +D+T EF V+SK RDL L KE+D AE Q +LE K+++ E NPPSDVYLS RDRQILDWH ANLEFANATPLS LSLKHWDQDDDFEFTGSH+TV NG+SC+P ALAEGLDI+LNTAVR V+YT G EV+ V ++ TSQTF K DAVLCTLPLGVLK + PP++ F PPLP+WKT A+ RMGFGNLNKV+LCFDRVFW+ S NLFGHV STT++RGELFLFW++YKAP+LLALVAGEAA +E SDDVI+GR L +LKGIFGS+ VPQPKET+V+RW++D W+RGSYS+VAAGSSGNDYD+MA P+ P P IPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLG Y L +
Sbjct: 174 VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTG-KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRS---TSQTFIYKCDAVLCTLPLGVLKQQ-PPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP---QPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTLPR 838 The following BLAST results are available for this feature:
BLAST of TCONS_00071334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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