TCONS_00071324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071324
Unique NameTCONS_00071324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071324 ID=TCONS_00071324|Name=TCONS_00071324|organism=Clytia hemisphaerica|type=transcript|length=691bp
gatttttttgaaattcctaaAGCCTTGAAACGCATGTTTGAAATATGTAT
TACTGAAACGTACAAAGTACAAGGAGATTCATAGATTCGAAAACTAGTTT
CCCGGTGGCTTATCAAGAAACGTAAAAATGAGTAATTGATTCATACCTTC
CATTTTTAGTCACAATCATTTCATTGGTCAGTGATTTGAATTTCTTCCAC
AGCTCTGAGTCCTCCAGATGAACATGGACATGTTTAGCTTCAGAAGATAA
TTCTTCTTTCTTGGGTAGTTCATCTTCATAATTCTTCTGTTTCTTTTGTG
GTGGAGGCGCTTGGAGAATCTCCTCATTATCATTGCAGTCTGTTGTATAT
ttaggttgttgttgttgtgggtGTTGCGGCGCCATTTGTCCTTGTGGTGG
TTGTAAACTCATTAGCGGTTGATGTTGTGCCGCTTGTTGTTGTGCCATTT
GTAGATGTTGTAGTTTTAATTCTTCGTGATGTTCgtctgccattttttgt
ttctcTGACGTCAATATGGTGTTCATGGAGAAATTATTAGGTGTCATTTC
AGTCTCGTCTAATTTGCAATACATTTGTTTCTGTTTATCTGTTTATAATG
TTCGAGttttccaaaataatttttgtaatatattttatctaTTCTTCTAA
TGTGTTTTTCAACCAAAAGTTACTGTATAAACCACCGACTC
Run BLAST on NCBI

transcript from alignment at scaffold_60:72017..72764-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071324 ID=TCONS_00071324|Name=TCONS_00071324|organism=Clytia hemisphaerica|type=transcript|length=748bp|location=Sequence derived from alignment at scaffold_60:72017..72764- (Clytia hemisphaerica)
GATTTTTTTGAAATTCCTAAAGCCTTGAAACGCATGTTTGAAATATGTAT
TACTGAAACGTACAAAGTACAAGGAGATTCATAGATTCGAAAACTAGTTT
CCCGGTGGCTTATCAAGAAACGTAAAAATGAGTAATTGATTCATACCTTC
CATTTTTAGTCACAATCATTTCATTGGTCAGTGATTTGAATTTCTTCCAC
AGCTCTGAGTCCTCCAGATGAACATGGACATGTTTAGCTTCAGAAGATAA
TTCTTCTTTCTTGGGTAGTTCATCTTCATAATTCTTCTGTTTCTTTTGTG
GTGGAGGNTCTTCTTTCTTGGGTAGTTCATCTTCATAATTCTTCAGTTTC
TTCTGTGGTGGAGGCGCTTGGAGAATCTCCTCATTATCATTGCAGTCTGT
TGTATATTTAGGTTGTTGTTGTTGTGGGTGTTGCGGCGCCATTTGTCCTT
GTGGTGGTTGTAAACTCATTAGCGGTTGATGTTGTGCCGCTTGTTGTTGT
GCCATTTGTAGATGTTGTAGTTTTAATTCTTCGTGATGTTCGTCTGCCAT
TTTTTGTTTCTCTGACGTCAATATGGTGTTCATGGAGAAATTATTAGGTG
TCATTTCAGTCTCGTCTAATTTGCAATACATTTGTTTCTGTTTATCTGTT
TATAATGTTCGAGTTTTCCAAAATAATTTTTGTAATATATTTTATCTATT
CTTCTAATGTGTTTTTCAACCAAAAGTTACTGTATAAACCACCGACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044325XLOC_044325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071324-exon-scaffold_60-1575043694:72459..72764TCONS_00071324-exon-scaffold_60-1575043694:72459..72764Clytia hemisphaericaexon
TCONS_00071324-exon-scaffold_60-1575043694:72017..72401TCONS_00071324-exon-scaffold_60-1575043694:72017..72401Clytia hemisphaericaexon
TCONS_00071324-exon-scaffold_60-1510915933:72459..72764TCONS_00071324-exon-scaffold_60-1510915933:72459..72764Clytia hemisphaericaexon
TCONS_00071324-exon-scaffold_60-1510915933:72017..72401TCONS_00071324-exon-scaffold_60-1510915933:72017..72401Clytia hemisphaericaexon
TCONS_00071324-exon-scaffold_60-1491911889:72459..72764TCONS_00071324-exon-scaffold_60-1491911889:72459..72764Clytia hemisphaericaexon
TCONS_00071324-exon-scaffold_60-1491911889:72017..72401TCONS_00071324-exon-scaffold_60-1491911889:72017..72401Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:72017..72764 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0354639	0.40263	0.505072	0	44.9994	34.1256	7.53436	8.36156	0.647503	6.66919	0	2.3325	9.79051	7.57028	0.413308	0.640262	7.38733	4.68533	14.7028	4.18178	3.42861	4.43606	0.297726	1.81622	2.40318	3.91446	0	0.230375	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001699TF_T-box
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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