TCONS_00071319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071319
Unique NameTCONS_00071319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length923

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071319 ID=TCONS_00071319|Name=TCONS_00071319|organism=Clytia hemisphaerica|type=transcript|length=923bp
ATCGATCTAAATGTCATGAATCTTTATTAGGCCAACCCTAACTAAAAAGG
AATTTAgacaaattgaaaaatataaaatagtcAAATAACCATTTTTCTAA
ACGTTAAATTAATCCTTGGATTAGGACATGTAGATATTGATCTCTTTGGT
AAACCATGATACCAAAAATCATTTGTTGGGTTATTCATAACAAGCAAACT
TCCATGTTCAAGCATCATTTTATGCTTCAAAGTACTATCTTTGACTGTAC
CATTTTTCAAGTCTTTATGACGAAATACAAATTCTCTGTTTTGACCAAGA
CTTAATGAAGCTATTGGTGCATTGTTATGAAGATCCTTTTCATTATCTTG
GTGCTCTCCCATATAATCTTGACCATCTTTATACCGattaaccaaaacaa
aattaaaattacaatTCAATAAATCACTCACAATATCTTTGAGTTGTTTA
AGGATAGGAAGCCATGGTGCTGCGGGTACAGTTACATTTGAAAATGTGTA
TGTTAGTCCATCATCTCCGTatgctttttgttttcttggcaCATCAAATg
ttttcccgaaaattttcaCTTGACTGATTTTATCATATTCAATTTctctt
tctaaatttttataaataaagtCGGCAGTCGTTTTGCTGAACACAACACC
ATATTTTATATTAAGTcctctatttttcatttctatAAGAGTTAGATTTA
GTAAAAAAACAAgttcatatttttcttcttttttcttcttagcTGCAGTT
TGATCACAAGTTCTTCGATCTTCTACCAAAATGAATGATTGTTTCCTCTT
TTTCTGCTCCATTTTTCAGCGATTAAATATATAAGAACTATAATCAAAAT
AGGGGAATTAAATATCAGTAACAATTTGACAAGACTAAACACAGAATAAG
GATTAGATTTTATCATTCACAAA
Run BLAST on NCBI

transcript from alignment at scaffold_60:1709054..1710105+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071319 ID=TCONS_00071319|Name=TCONS_00071319|organism=Clytia hemisphaerica|type=transcript|length=1052bp|location=Sequence derived from alignment at scaffold_60:1709054..1710105+ (Clytia hemisphaerica)
ATCGATCTAAATGTCATGAATCTTTATTAGGCCTATCCTAACTAAAAAGG
AATTTAGACAGTCAGCTTTTAAAATTCTGTAAAATTAAGTTACTGATGAC
AGTTCATTATAATAATCATCTCCACAATTATCTATCTAAATGTCATGAAT
CTTTAATAGGCCAACCCTAACTAAAAAGGAATTTAgacaaattgaaaaat
ataaaatagtcAAATAACCATTTTTCTAAACGTTAAATTAATCCTTGGAT
TAGGACATGTAGATATTGATCTCTTTGGTAAACCATGATACCAAAAATCA
TTTGTTGGGTTATTCATAACAAGCAAACTTCCATGTTCAAGCATCATTTT
ATGCTTCAAAGTACTATCTTTGACTGTACCATTTTTCAAGTCTTTATGAC
GAAATACAAATTCTCTGTTTTGACCAAGACTTAATGAAGCTATTGGTGCA
TTGTTATGAAGATCCTTTTCATTATCTTGGTGCTCTCCCATATAATCTTG
ACCATCTTTATACCGattaaccaaaacaaaattaaaattacaatTCAATA
AATCACTCACAATATCTTTGAGTTGTTTAAGGATAGGAAGCCATGGTGCT
GCGGGTACAGTTACATTTGAAAATGTGTATGTTAGTCCATCATCTCCGTa
tgctttttgttttcttggcaCATCAAATgttttcccgaaaattttcaCTT
GACTGATTTTATCATATTCAATTTctctttctaaatttttataaataaag
tCGGCAGTCGTTTTGCTGAACACAACACCATATTTTATATTAAGTcctct
atttttcatttctatAAGAGTTAGATTTAGTAAAAAAACAAgttcatatt
tttcttcttttttcttcttagcTGCAGTTTGATCACAAGTTCTTCGATCT
TCTACCAAAATGAATGATTGTTTCCTCTTTTTCTGCTCCATTTTTCAGCG
ATTAAATATATAAGAACTATAATCAAAATAGGGGAATTAAATATCAGTAA
CAATTTGACAAGACTAAACACAGAATAAGGATTAGATTTTATCATTCACA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044322XLOC_044322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071319-exon-scaffold_60-1491911889:1709054..1709083TCONS_00071319-exon-scaffold_60-1491911889:1709054..1709083Clytia hemisphaericaexon
TCONS_00071319-exon-scaffold_60-1510915933:1709054..1709083TCONS_00071319-exon-scaffold_60-1510915933:1709054..1709083Clytia hemisphaericaexon
TCONS_00071319-exon-scaffold_60-1575043694:1709054..1709083TCONS_00071319-exon-scaffold_60-1575043694:1709054..1709083Clytia hemisphaericaexon
TCONS_00071319-exon-scaffold_60-1491911889:1709213..1710105TCONS_00071319-exon-scaffold_60-1491911889:1709213..1710105Clytia hemisphaericaexon
TCONS_00071319-exon-scaffold_60-1510915933:1709213..1710105TCONS_00071319-exon-scaffold_60-1510915933:1709213..1710105Clytia hemisphaericaexon
TCONS_00071319-exon-scaffold_60-1575043694:1709213..1710105TCONS_00071319-exon-scaffold_60-1575043694:1709213..1710105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1709054..1710105 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.7076	27.3767	7.93268	7.6508	1.00512	0.582457	2.23589	2.39225	1.08866	1.24476	1.30887	0.728033	1.421	1.16685	1.29789	2.11952	1.93966	1.45283	0.633842	0.497453	2.11384	1.47629	27.1757	22.5312	1.49376	3.33286	1.56706	3.19939	7.61078	9.88939
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027450AlkB-like
IPR005123Oxoglu/Fe-dep_dioxygenase
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00071319 vs. Swiss-Prot (Human)
Match: ALKB2 (DNA oxidative demethylase ALKBH2 OS=Homo sapiens GN=ALKBH2 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.912e-59
Identity = 98/201 (48.76%), Postives = 140/201 (69.65%), Query Frame = -1 
Query:   84 MKNRGLNIKYGVVFSKTTADFIYKNLEREIEY--DKISQVKIFGKTFDVPRKQKAYGDDGLTYTFSNVTVPAAPWLPILKQLKDIVSDXXXXXXXXXXXNRYKDGQDYMGEHQDNEKDLHNNAPIASLSLGQNREFVFRHKDLKNGTVKDSTLKHKMMLEHGSLLVMNNPTNDFWYHGLPKRSISTCPNPRINLTFRKMVI 680
            ++  GL+  Y V+F K  AD I++ LE+E+EY    +++V++FGK   VPRKQ  YGD GLTYTFS +T+   PW+P+L++++D VS +    FNFVL+NRYKDG D++GEH+D+E++L   +PIAS+S G  R+FVFRHKD +  +        ++ L HGSLL+MN+PTN  WYH LP R       PR+NLTFRK+++
Sbjct:   60 IRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLA--PRVNLTFRKILL 258
The following BLAST results are available for this feature:
BLAST of TCONS_00071319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ALKB22.912e-5948.76DNA oxidative demethylase ALKBH2 OS=Homo sapiens G... [more]
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