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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071316 ID=TCONS_00071316|Name=TCONS_00071316|organism=Clytia hemisphaerica|type=transcript|length=201bp
acaaaagaaaaacatcctcATCTTTTCacgaaagaagaaaagtttgCTTG
GGGAGCTGATGTTTTCTTCGGATTCAGAGATATGAGATGGAAGGAAAGTG
CTTACGAGTCTTACGAAGCTTGGTACATAGGAATCAATTCACTTTTGACA
AACGAGAGACAAGTCAATATCATCAGTGTTGGaacaaaatatgttttcat
g Run BLAST on NCBI transcript from alignment at scaffold_60:1680285..1690888+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071316 ID=TCONS_00071316|Name=TCONS_00071316|organism=Clytia hemisphaerica|type=transcript|length=10604bp|location=Sequence derived from alignment at scaffold_60:1680285..1690888+ (Clytia hemisphaerica)
acaaaagaaaaacatcctCATCTTTTCACGAAAGAAGAAAAGTTCGCTTG
GGGAGCTGATGTTTTCTTCGGATTCAGAGAGATGAGATGGGAGGAAAGTG
CTTACGAGTCTTACGAAGCTTGGTATATAGGAATCAGTTCAGTTTTGACA
AACCGAAGACAAGTTACTATCATCAGTGATGGaacaaaatatgttttcat
gaAGAAACATGAAAACAAAACTGGTCAAAGACTATTTATTGGATTTAGGG
AAAAAGTACGTTATAATTATACAGCGCAAGACTATGAAATAATCTTTGAA
GGTCTGAACGAAGAAACGATGAAAAATGGACGATTCCTCCTTCTCCATCC
CAAAGTACCTGAAAAGCGTTTGAATTTTGTGCCATATCATGGTAATAAGG
ATTTGAATTGGTGGGATCTCGAAAAGGTTACTGAAGATTATTACTCTGGT
AATGAAAAATCTGTAATCATTTTAGTATTTTATAATTAATTTGATCATCA
TACATATTTTTAGGATACATTTGACTCTCAAACTTGAacggggaattttg
ttcgaattaaagagagattcaaattatagaaaatatttcaagaggATTTC
TCATTGACGGGGgctggaaacaagttcgaattatagaaagattttaataa
cagaagttcgaataagcgaaagTTGTGctgtaactgttttcataaattca
aaaagtatcaaaatgcTAAATTCAATTTCGGTTTCCTCTTCCTTTTCCTT
CCACTTAAAATAATATGAAAGACGAAATATATATTAAGTAAAATTGAGGa
agtccaaaattttcgaagcctgcgaaaaaaattttttaggcaaatttggc
caaaaaaacgggtttttcggactttgtgcaaaattggatcattaattttt
tttgattttttccatgaaagaaggctaccatcataggtaaaagatggctg
aagcagaattttgcaaaaaaaatttgttggctcaaaaaacgcatgtttat
ctataagaattactattaataagcatacatcaatgttcttagtcaaatta
ctcaatttttttatgagatagatgttttttttgctcatgaggatttcatt
ttgaagaatatgtgtgtttagacaggaaatttgggttgcttggcgtgttt
ttataaaaaaactgaccaaattcgatatttttttataagcacattatcaa
ttacttaggtattagcttttctcgaggtggatctttcattctttatgatt
tattgcacaaacatgcataactataaaccctcgaatgtgacggagcttga
tttttggataaaaaaattttggggtaaatttcagctaaaaaacagctaaa
aaacgggttttttggactttgtgaaatattggatcattgtttttttctga
tattttgcatgaaagtaggtaaaagatggctcaagcagattttNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcactattaataagcatac
atcaatgttcttagccaaattactcaattttttgatgagatagatgtttg
tttttgctcacaaagtcttgaatatgaaagaatatatcaagagcatgaaa
ttttggtttctaaacgttttgtttataagaaacaaacgactaattttaat
agatcgtcactatttgtgttctgaatgattgtttaatggtcacgtcacgt
agatatcaattataaatgtgttaaatgcataaccaggtaggtccataaaa
gtatcacttgttaagcCTTAAAAGTAAtttaggattttattttcactatt
ttgtcaGTATTCTTGTGtaatttcctaaaaaattttaaaaaccaaaaagc
aacctaaaaatgttcgtaatataaagtaaaattgataaaattgattCATA
AATAGACACTATTATAtgcttcttaatttttttgtttatcaaaggaatat
gttcttgtatagtttgttcttataaaaaaggtgtattgcatAAACGAGTG
AAACTCTGTTCccttcttaaccctattcaacctaggcttttagaggcggt
ttaaaaaaaagggggggaaaaaaaacgccccccccccccccctttttaac
ccctttcaacctaggcttttaggggcggttcagaactggggggggggggg
ggcttttcctgtaccactcCTTaatttttgatctagtgggtctttttgga
tgaaatttggcacacaagatccttgtcacataaggtaacttttgacaaaa
aatttttttgatgacgtcactaatCATGCcgaaagtgagcaaaaactcaa
aatttcctttgttcttaaaAATAGCTATGGTATTCtaaaaaaagctttag
aaaaaagttgcctgagtttaaaatgtttattttatcctagatattcaata
aattacggtttaaatgatatatttgacattaaaaataaattcatattgga
aaagtgtcactttttctgacagactttatgtcagaaatgtcatcatgctc
aaagtgtgaaaatttttaggtgtcaatttttttttattttaaagctaaat
aaaagttaggactttacagaaaatttcatggcaaaagctctattatttca
ggagctattaccaataatttgacctacgaacagaaacagcccccccccta
ggccgaatagggttaaagtttTCATTATATTGTTAGCAGAAAGGTCTATT
TGGGAATATATTTCACAAAAACTTCTTTCCATGAATAATTGTAACCATGT
CAATAAGTTTTCATCAAAAATCTTACTTGAAGTGCAGTTTTACGAAAACT
AAACACTTGCCTTGTAACTGTAAAACAGAAGTATCAAATTGAATGTAGAT
TTTGAgtttagttttattttttactccTGTCTTATAGCCCCTGGTGAAAC
TTCTTTACACatagtggggatgaaaatttttaattactgtaaGTAGAGGT
AATTTTAAGAACTGCTTGAAATCGGGCAATACAAAAATgcatttcttttc
tttcaatttcttttaacCTTTCGGTACCATTGATTTCATTGACTATTTAA
TAGTCTATTATTAACCAGAGTGATTAACAGTTTGAAtaatagaaagattt
gaataacagaagttcgaataagcgagagtttgctgtaactgttttcataa
attcaaaaagtatcaaaatccTAAATTCAATTTCAGTTTCCTCTTCCTTT
TCCTTCCACTTAAAATAATATGAAAGACGAAATATATATTAAGTTAAATT
TGAGGAAGTCCAAAATCTTCGAAACCTGCAgatcttcttaactttttgag
tttttagaaGCTTTACAATGtagtttaaaatttcattttcaccattttgt
agtTTCCTGAAAATTTTGGGTTTTTTCGAGACCAAAAAGtaatcttaaaa
tgttccttatataaagtacatgtttttttatcagcattgcacttataagc
atatctaggctcagatatggggaaaaattaagcatatggcaagcatttgc
ttgagcctacaaaaaatatttttttcctgataTTGGCTTTTCTTGGCTGG
AATTTCACTGATTTTCAGTATtaccctaaatttatgctttagatttaagc
atcccctcaagcatttttcagcctttttaAGCGTTCGACCTatgcatctc
tgagcctgttttcggatttttgtatgcttataaaaaaaaacatgtaatgt
gCTAGCAAGTCGCTGCAGAAAATTGAAATCTGAAAATATTCATATTTCAT
ATTTGCCTATGAATAGGATTAGGATTAGattaggggtagaaaccaatcaa
gtagTCAGACTGCTGAAAAATAAGGTgaaatgatgaaatggatttacacc
attcttataaaaacaagtaatactttaatggacctacctatttataaaac
gaataattagaatttaatggaagtaatgtataattttaaatttcgattta
tatatctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAAAAGCGTGTAGACAAAAGTTCTTAA
TTAAAAACCCATCTAATGATGTTGAACTGCtttgcaaataaaaaatgtaa
taCGAGATTGTCTGTGTTATCTTTATGTTATTTGTATGTATTTTATAAAG
AGAGACTTTCTGATATTTCGTTGTTGTTGAAGGGAAAAGCTTGTGAAAGT
GCGTTTGGTGAATTGCAACTGAAAGTTCTCAACATAGATAACAATAATAT
GGATTCTGCACATGGAGACGAGAGAAATTTAGCTAACAGTGCAAGTGGGA
GAAATGTGCACAAAAGTGCTGACGATGAAGAAATCATCCAACTCAAAGAA
GAACATCaaagagaaattcaaaaattgaattatgaGTCAAAGATTGAATT
GATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGACAATCAAACGT
TAGGTCATCAATTGGAGATGTTGAAGTTGAAGAATTCACATGAAGCTGAA
ACGAAACAAGTTGCCGCTGACAAAGATCTTCAAAATAAACTgactgaaat
ggaaaaacaactTGCTATAAAGGACAAGGAGATATTAGACACGAAAAACC
AGATGGCACTCAAAGAAAACCAATGGGAAAACGAATGTAAAATGAAACTA
ATGAAAAACGACAAGGAAATgctggaaaaagaaaatgatttcaaaCTTCA
AATCAAAGATTTAGAAAGCTCCAAAAAGAACAACAACCAACCGGAATCTA
AAATGGCAgtcataaaagaaaaatatcctCATGTTTTCacgaaagaagaa
aagtttgCTTGGGGAGCTGATGTTTTCTTCGGATTCAGAGAGATGAGATG
GGAGGAAAGTGCTTACGAGTCTTACGAAGCTTGGTACATAGGAATCAGTT
CACTTTTGACAAACAAGAGACAAGTTACTATCATCAGTGATGGaataaaa
tatgttttcatgAAGAAACATGCAAACAAAACTTGTCAACAACTACTTAT
CGGATTTAGGGAAAAAGTAAGTTATAATTATACAGAGCCAGACCATCAAA
TAATCTTTGAAGGTCTGAGCGAAGAAACTATGAAAAATGGACGATTCCTC
CTTCTCCATCCCAAAGTACCTGAAAAGCGTTTGAAGTTTGTGCCATATCA
GTATGATAAGGATTGGTGGAATCTTGAGAATGTTACTGAAGATTATTACT
CTGGTAATGAACAATCTGTAATCATTTTagtattttgaaattaatttgat
CATCATACATATTTTTAGGATACAGTTGACTCTCAAACTCGAACGGGAAA
Ttctatttgttcgaattacagagaatattcaaattatagaaaatatttta
agagggtttctcattgacggggactggaaacaagttcgaattatagaaag
atttcaaataacagaagttcgaataagcgagagtttactgtaactgtttt
cataaattcaaaaagtatcaaaatccTAAATTCAATTTCGGTTTCCTCTT
TCTTTTCCTTCCACTTAAAATAATATGAAAGACGAAATATAAATTAAGTT
AAATTGAGAACATCCACAATCTTCGATGTCTGTGAATGTTCttacctttt
tgagtttttaagctTTACAATATAgtttaaaactttattttcaccatttt
gtgagtattcgtGTGTAATTTCCTTAAGAATTTTGATCTTTTAGAGACCA
AAAAgcaaccttaaaatgttcttaatataaAGTAATGTGCTATAAAGTCG
CTGCAGAAAATTGAAATCTGAAAATATTCATAAATAGACACTATTatata
ctttttaattttttgcctGATCAAAGCAatatgttcttgtatagtttgtt
cttataaaaaaagtgtattgcgTAAACGAGTGAAATTCATTATATTGTTA
GCAGACAGGTCTATTTGGGAATATATTTCACAAAAACCTCTTTCCATGAA
TAATTGTTACTATGCCAATAAGTTTTCatcaaaaatctaatttgaaGTGC
AGTTTTACGAAAACTTGTAACTGCAGAAAACAGAAGTATCAGATTGAATG
TAGATTTGGAgtttagttttattttttactccTGTCTTATAGCCCCTGGT
GAAACTTCTTTACACATAGTgtggatgaaaatttttaattactgtaaaTA
GAGGTAATTAAGAACTGTTTGAAATCGGGCAATACAAAAATgcatttctt
ttctttcaatttcttttaacCTTTCGGTACCATTGATTTCATTGACTATT
TAATAGTCTATTATTAACCAGAGTGATTAACAGTTTGAAtaatagaaaga
tttgaataacagaagttcgaataagcgagagtttgctgtaactgttttca
taaattcaaaaagtatcaaaatccTAAATTCAATTTCAGTTTCCTCTTCC
TTTTCCTTCCACTTTAAATAATATGAAAGACGAAATATATattactagcc
ggtacccgcgCCGGCGTCGCAcaccggttaagctgtagctgaacgcactc
aAAGTCCTTttgatgttgaagctggcttaaaaaatgatcaaactaataaa
aagatgtcttcaaagtttgactctaaccctcccccggagatctttttctc
gcttcgctcgcattaaatacgccgtccagttttcgacaatttgagaaaat
gtcatggtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtgttggatttttaacaactctattgtgagataa
taactttgttgatcaaaataagaaaaaggttgccgtaacaagcacaaaat
cctatatttcTAAGGGTCCCTTCTCATAAAATaatcgataaatttcaaaa
agaattctatattacgaataggtaaccttttaattaatgatccatcagaa
tttgaaacccccctcccttttagacgtaaagatttataatgaagaaattt
tcaaggaaaatgtgctgaaactctcaaaattagcactgtgttcgcccaaa
aatacatcgatatgaaatcatagaactTTTGTAACTTgactttgagaaaa
ttattttcgtaTCGTgtttgaacaagaactttttgcataataagtttatt
tcaatcaggataacattctcacttctgttcttataaatttacatttcgga
tttttttgcttccaatgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCaa
caaagaaaagccgctttgaatagatttataaaagatttcaacgatcattt
aggtcattaccgagacgttttctctccatctatatctttattacctctat
gatcagatttaaaaagataaataagtcaattctaaattgctttttttaaa
cccttgtcataacttttcgaaattaaacatgtaaaatgacgaAGTTTTTA
ATAGTATCCAccacttgaaaatttttatatgaagaaaaagatggactaat
ttcttctcttgctttttatcgccctttgcTGAAataaaggctgaataaag
tctaaaccatgCTCTATTCGATCTgtgaatcaaaacaaacttatcgagaa
caaaacattgcttgcgaaatcgaaagtatgcgcgaatccaatagaacaaa
tttgtggagcaatagactaaaagtcataattttaaaacacaaacaaagcg
aaaacgaaagtggtgacacacagacacacaaagcaccgctattaatatat
agaagtTAAATTTGAGGTCCAAAATCTTCGAAACCTGCAgatcttcttaa
ctttttgagtttttagaaGCTTTACAATGtagtttaaaatttcattttca
ccattttgttagTATACTTGTgtaatttcctgaaaattttggGTTTTTTC
GAGACCAAAAAgtaaccttaaaatgttccttatataaagtacatgttttt
ttttataagcattgcacttataagcatatctaggctcagatatggggaaa
aattaagcatatggcaagcatttgcttgagcctacaaaaaatattttttt
cctgattttggcttttcttGGCTGGAATTTCACTGATTTTCAGTATtacc
ctaaatttatgctttagatttaagcatcccctcaagcatttttcagcctt
tttaAGCGTTCGACCTatgcatctctgagcctgttttcggatttttgtat
gcttataaaaaaaaaacatgtaatgtgCTAGCAAGTCGCTGCAGAAAATT
GaaatctgaaaatattatatttcatATTTGCCTATGAATAGGATTAGGAT
TGGattaggggtagaaaccaatcaagtagTCAGACTGCTGAAAAATAAGG
Tgaaatgatgaaatggatttacaccattcttataaaaaaaaagcgtgtag
acaAAAGTTCTTAATTAAAAACCCATCTAATGATGTTGAACTGCtttgca
aataaaaaatgtaataCGAGATTGTCTGTGTTATCTTTATGTTATTTGTA
TGTATTTTATAAAGAGAGACTTTCTGATATTTCGTTGTTGTTGAAGGGAA
AAGCTTGTGAAAGTGCGTTTGGTGAATTGCAACTGAAAGTTCTCAACATA
GATATTAATATGGATTCTGCACATGGAGACGAGAGAAATTTAGCTCACAG
TGCAAGTGGGAGAAATGTGCACAAAGTTGCTGACGATCAGCAAATCATCA
AACTCAGGGAAGAACATGGAAGAGAAATCCAAAAATTGAACTATGAGTCA
AAGATTGAATTGATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGA
CAATCAAACGTTAGGTCATCGATTGGAGATGTTGAAGTTGAAGAATTCAC
ATGAAGCTGAAACGAAACAAGTTGCCGCAGACAAAGATCTTCAAATTAAA
CTgactgaaatggaaaaacaactTGCTATAAAGGACAAGGAGATAGCAGC
CAAGAAAATGGAGCTAATGACAAAAGACCAGGAAATGCtggaaaaaaaat
gatttcaaactTCAAATCAAAGATATGGAAAACTCCAACAAACTGAAATT
TGTGGAAATGGTGAAAGAAAAAGATGCGACAATCCAAAGACTTCGAAATG
AAAtcgaaaagttcaaaaagaacaacaaccAACCAGAATCTAAAATGGCg
gtcacaaaaaaaaaacatcctcATCTTTTCacgaaagaagaaaagtttgC
TTGGGGAGCTGATGTTTTCTTCGGATTCAGAGATATGAGATGGAAGGAAA
GTGCTTACGAGTCTTACGAAGCTTGGTACATAGGAATCAATTCACTTTTG
ACAAACGAGAGACAAGTCAATATCATCAGTGTTGGaacaaaatatgtttt
catg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071316-exon-scaffold_60-1491911889:1680285..1680297 | TCONS_00071316-exon-scaffold_60-1491911889:1680285..1680297 | Clytia hemisphaerica | exon |
| TCONS_00071316-exon-scaffold_60-1510915933:1680285..1680297 | TCONS_00071316-exon-scaffold_60-1510915933:1680285..1680297 | Clytia hemisphaerica | exon |
| TCONS_00071316-exon-scaffold_60-1575043694:1680285..1680297 | TCONS_00071316-exon-scaffold_60-1575043694:1680285..1680297 | Clytia hemisphaerica | exon |
| TCONS_00071316-exon-scaffold_60-1491911889:1690701..1690888 | TCONS_00071316-exon-scaffold_60-1491911889:1690701..1690888 | Clytia hemisphaerica | exon |
| TCONS_00071316-exon-scaffold_60-1510915933:1690701..1690888 | TCONS_00071316-exon-scaffold_60-1510915933:1690701..1690888 | Clytia hemisphaerica | exon |
| TCONS_00071316-exon-scaffold_60-1575043694:1690701..1690888 | TCONS_00071316-exon-scaffold_60-1575043694:1690701..1690888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1680285..1690888 + |
Blast
The following BLAST results are available for this feature:
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