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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071315 ID=TCONS_00071315|Name=TCONS_00071315|organism=Clytia hemisphaerica|type=transcript|length=301bp AACTGAAAGTTCTCAACATACATAACAATAATATGGATTCTGCACATGGA GACGAGAGAAATTTAGCTCACAGTGCAAGTGGGAGAAATGTGCACAAAGT TGCTGACGATCAGCAAATCATCAAACTCAGGGAAGAACATGGAAGAGAAA TCCAAAAATTGAACTATGAGTCAAAGATTGAATTGATGGAAGCTCAAATG AAAAATGTCAGTTTGGAAAAAGACAATCAAACGTTAGGTCATCGATTGGA GATGTTGAAGTTGAAGAATTCACATGAAGCTGAAACGAAACAAGTTGCCG C Run BLAST on NCBI transcript from alignment at scaffold_60:1679731..1690412+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071315 ID=TCONS_00071315|Name=TCONS_00071315|organism=Clytia hemisphaerica|type=transcript|length=10682bp|location=Sequence derived from alignment at scaffold_60:1679731..1690412+ (Clytia hemisphaerica) AACTGAAAGTTCTCAACATACATAACAATAATATGGATTCTGCACATGGA
GACGAGAGAAATTTAGCTCACGTCGCAAGTGGGAGAAATGTGCAAAAAGT
TGCTGACGATCAGCAAATCATCAAACTCAAGGAAGAACACGGaagagaaa
ttcaaaaattgaattatgaGTCAAAGATTGAATTGATGGAAGCTCAAATG
AAAAATGTCAGTTTGGAAAAAGACAATCAAACGTTAGGTCATCGATTGGA
GATGTTGAAGTTGAAGAATTCACATGAAGCTGAAACGAAACAAGTTGCCG
CTGACAAAGATCTTCAAAATAAACTgactgaaatggaaaaacaactTGCT
ATAAAGGACAAGGAGATATCAGACACGAAAAACCAGATGGCAGTTAAGGA
AAACGAATGTAAAATAAAACTAATGACAAAAGACCAGGAAATgctggaaa
aagaaaatgagatAAAGGAAAAAGATGCGACAATCCAAAcacttcaaaat
gaaattgaaaaattgaaaaggagCCACAACCCAACAGAATCTAAAATGGC
TgtcacaaaagaaaaacatcctCATCTTTTCACGAAAGAAGAAAAGTTCG
CTTGGGGAGCTGATGTTTTCTTCGGATTCAGAGAGATGAGATGGGAGGAA
AGTGCTTACGAGTCTTACGAAGCTTGGTATATAGGAATCAGTTCAGTTTT
GACAAACCGAAGACAAGTTACTATCATCAGTGATGGaacaaaatatgttt
tcatgaAGAAACATGAAAACAAAACTGGTCAAAGACTATTTATTGGATTT
AGGGAAAAAGTACGTTATAATTATACAGCGCAAGACTATGAAATAATCTT
TGAAGGTCTGAACGAAGAAACGATGAAAAATGGACGATTCCTCCTTCTCC
ATCCCAAAGTACCTGAAAAGCGTTTGAATTTTGTGCCATATCATGGTAAT
AAGGATTTGAATTGGTGGGATCTCGAAAAGGTTACTGAAGATTATTACTC
TGGTAATGAAAAATCTGTAATCATTTTAGTATTTTATAATTAATTTGATC
ATCATACATATTTTTAGGATACATTTGACTCTCAAACTTGAacggggaat
tttgttcgaattaaagagagattcaaattatagaaaatatttcaagaggA
TTTCTCATTGACGGGGgctggaaacaagttcgaattatagaaagatttta
ataacagaagttcgaataagcgaaagTTGTGctgtaactgttttcataaa
ttcaaaaagtatcaaaatgcTAAATTCAATTTCGGTTTCCTCTTCCTTTT
CCTTCCACTTAAAATAATATGAAAGACGAAATATATATTAAGTAAAATTG
AGGaagtccaaaattttcgaagcctgcgaaaaaaattttttaggcaaatt
tggccaaaaaaacgggtttttcggactttgtgcaaaattggatcattaat
tttttttgattttttccatgaaagaaggctaccatcataggtaaaagatg
gctgaagcagaattttgcaaaaaaaatttgttggctcaaaaaacgcatgt
ttatctataagaattactattaataagcatacatcaatgttcttagtcaa
attactcaatttttttatgagatagatgttttttttgctcatgaggattt
cattttgaagaatatgtgtgtttagacaggaaatttgggttgcttggcgt
gtttttataaaaaaactgaccaaattcgatatttttttataagcacatta
tcaattacttaggtattagcttttctcgaggtggatctttcattctttat
gatttattgcacaaacatgcataactataaaccctcgaatgtgacggagc
ttgatttttggataaaaaaattttggggtaaatttcagctaaaaaacagc
taaaaaacgggttttttggactttgtgaaatattggatcattgttttttt
ctgatattttgcatgaaagtaggtaaaagatggctcaagcagattttNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcactattaataagc
atacatcaatgttcttagccaaattactcaattttttgatgagatagatg
tttgtttttgctcacaaagtcttgaatatgaaagaatatatcaagagcat
gaaattttggtttctaaacgttttgtttataagaaacaaacgactaattt
taatagatcgtcactatttgtgttctgaatgattgtttaatggtcacgtc
acgtagatatcaattataaatgtgttaaatgcataaccaggtaggtccat
aaaagtatcacttgttaagcCTTAAAAGTAAtttaggattttattttcac
tattttgtcaGTATTCTTGTGtaatttcctaaaaaattttaaaaaccaaa
aagcaacctaaaaatgttcgtaatataaagtaaaattgataaaattgatt
CATAAATAGACACTATTATAtgcttcttaatttttttgtttatcaaagga
atatgttcttgtatagtttgttcttataaaaaaggtgtattgcatAAACG
AGTGAAACTCTGTTCccttcttaaccctattcaacctaggcttttagagg
cggtttaaaaaaaagggggggaaaaaaaacgccccccccccccccctttt
taacccctttcaacctaggcttttaggggcggttcagaactggggggggg
ggggggcttttcctgtaccactcCTTaatttttgatctagtgggtctttt
tggatgaaatttggcacacaagatccttgtcacataaggtaacttttgac
aaaaaatttttttgatgacgtcactaatCATGCcgaaagtgagcaaaaac
tcaaaatttcctttgttcttaaaAATAGCTATGGTATTCtaaaaaaagct
ttagaaaaaagttgcctgagtttaaaatgtttattttatcctagatattc
aataaattacggtttaaatgatatatttgacattaaaaataaattcatat
tggaaaagtgtcactttttctgacagactttatgtcagaaatgtcatcat
gctcaaagtgtgaaaatttttaggtgtcaatttttttttattttaaagct
aaataaaagttaggactttacagaaaatttcatggcaaaagctctattat
ttcaggagctattaccaataatttgacctacgaacagaaacagccccccc
cctaggccgaatagggttaaagtttTCATTATATTGTTAGCAGAAAGGTC
TATTTGGGAATATATTTCACAAAAACTTCTTTCCATGAATAATTGTAACC
ATGTCAATAAGTTTTCATCAAAAATCTTACTTGAAGTGCAGTTTTACGAA
AACTAAACACTTGCCTTGTAACTGTAAAACAGAAGTATCAAATTGAATGT
AGATTTTGAgtttagttttattttttactccTGTCTTATAGCCCCTGGTG
AAACTTCTTTACACatagtggggatgaaaatttttaattactgtaaGTAG
AGGTAATTTTAAGAACTGCTTGAAATCGGGCAATACAAAAATgcatttct
tttctttcaatttcttttaacCTTTCGGTACCATTGATTTCATTGACTAT
TTAATAGTCTATTATTAACCAGAGTGATTAACAGTTTGAAtaatagaaag
atttgaataacagaagttcgaataagcgagagtttgctgtaactgttttc
ataaattcaaaaagtatcaaaatccTAAATTCAATTTCAGTTTCCTCTTC
CTTTTCCTTCCACTTAAAATAATATGAAAGACGAAATATATATTAAGTTA
AATTTGAGGAAGTCCAAAATCTTCGAAACCTGCAgatcttcttaactttt
tgagtttttagaaGCTTTACAATGtagtttaaaatttcattttcaccatt
ttgtagtTTCCTGAAAATTTTGGGTTTTTTCGAGACCAAAAAGtaatctt
aaaatgttccttatataaagtacatgtttttttatcagcattgcacttat
aagcatatctaggctcagatatggggaaaaattaagcatatggcaagcat
ttgcttgagcctacaaaaaatatttttttcctgataTTGGCTTTTCTTGG
CTGGAATTTCACTGATTTTCAGTATtaccctaaatttatgctttagattt
aagcatcccctcaagcatttttcagcctttttaAGCGTTCGACCTatgca
tctctgagcctgttttcggatttttgtatgcttataaaaaaaaacatgta
atgtgCTAGCAAGTCGCTGCAGAAAATTGAAATCTGAAAATATTCATATT
TCATATTTGCCTATGAATAGGATTAGGATTAGattaggggtagaaaccaa
tcaagtagTCAGACTGCTGAAAAATAAGGTgaaatgatgaaatggattta
caccattcttataaaaacaagtaatactttaatggacctacctatttata
aaacgaataattagaatttaatggaagtaatgtataattttaaatttcga
tttatatatctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGCGTGTAGACAAAAGTTC
TTAATTAAAAACCCATCTAATGATGTTGAACTGCtttgcaaataaaaaat
gtaataCGAGATTGTCTGTGTTATCTTTATGTTATTTGTATGTATTTTAT
AAAGAGAGACTTTCTGATATTTCGTTGTTGTTGAAGGGAAAAGCTTGTGA
AAGTGCGTTTGGTGAATTGCAACTGAAAGTTCTCAACATAGATAACAATA
ATATGGATTCTGCACATGGAGACGAGAGAAATTTAGCTAACAGTGCAAGT
GGGAGAAATGTGCACAAAAGTGCTGACGATGAAGAAATCATCCAACTCAA
AGAAGAACATCaaagagaaattcaaaaattgaattatgaGTCAAAGATTG
AATTGATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGACAATCAA
ACGTTAGGTCATCAATTGGAGATGTTGAAGTTGAAGAATTCACATGAAGC
TGAAACGAAACAAGTTGCCGCTGACAAAGATCTTCAAAATAAACTgactg
aaatggaaaaacaactTGCTATAAAGGACAAGGAGATATTAGACACGAAA
AACCAGATGGCACTCAAAGAAAACCAATGGGAAAACGAATGTAAAATGAA
ACTAATGAAAAACGACAAGGAAATgctggaaaaagaaaatgatttcaaaC
TTCAAATCAAAGATTTAGAAAGCTCCAAAAAGAACAACAACCAACCGGAA
TCTAAAATGGCAgtcataaaagaaaaatatcctCATGTTTTCacgaaaga
agaaaagtttgCTTGGGGAGCTGATGTTTTCTTCGGATTCAGAGAGATGA
GATGGGAGGAAAGTGCTTACGAGTCTTACGAAGCTTGGTACATAGGAATC
AGTTCACTTTTGACAAACAAGAGACAAGTTACTATCATCAGTGATGGaat
aaaatatgttttcatgAAGAAACATGCAAACAAAACTTGTCAACAACTAC
TTATCGGATTTAGGGAAAAAGTAAGTTATAATTATACAGAGCCAGACCAT
CAAATAATCTTTGAAGGTCTGAGCGAAGAAACTATGAAAAATGGACGATT
CCTCCTTCTCCATCCCAAAGTACCTGAAAAGCGTTTGAAGTTTGTGCCAT
ATCAGTATGATAAGGATTGGTGGAATCTTGAGAATGTTACTGAAGATTAT
TACTCTGGTAATGAACAATCTGTAATCATTTTagtattttgaaattaatt
tgatCATCATACATATTTTTAGGATACAGTTGACTCTCAAACTCGAACGG
GAAATtctatttgttcgaattacagagaatattcaaattatagaaaatat
tttaagagggtttctcattgacggggactggaaacaagttcgaattatag
aaagatttcaaataacagaagttcgaataagcgagagtttactgtaactg
ttttcataaattcaaaaagtatcaaaatccTAAATTCAATTTCGGTTTCC
TCTTTCTTTTCCTTCCACTTAAAATAATATGAAAGACGAAATATAAATTA
AGTTAAATTGAGAACATCCACAATCTTCGATGTCTGTGAATGTTCttacc
tttttgagtttttaagctTTACAATATAgtttaaaactttattttcacca
ttttgtgagtattcgtGTGTAATTTCCTTAAGAATTTTGATCTTTTAGAG
ACCAAAAAgcaaccttaaaatgttcttaatataaAGTAATGTGCTATAAA
GTCGCTGCAGAAAATTGAAATCTGAAAATATTCATAAATAGACACTATTa
tatactttttaattttttgcctGATCAAAGCAatatgttcttgtatagtt
tgttcttataaaaaaagtgtattgcgTAAACGAGTGAAATTCATTATATT
GTTAGCAGACAGGTCTATTTGGGAATATATTTCACAAAAACCTCTTTCCA
TGAATAATTGTTACTATGCCAATAAGTTTTCatcaaaaatctaatttgaa
GTGCAGTTTTACGAAAACTTGTAACTGCAGAAAACAGAAGTATCAGATTG
AATGTAGATTTGGAgtttagttttattttttactccTGTCTTATAGCCCC
TGGTGAAACTTCTTTACACATAGTgtggatgaaaatttttaattactgta
aaTAGAGGTAATTAAGAACTGTTTGAAATCGGGCAATACAAAAATgcatt
tcttttctttcaatttcttttaacCTTTCGGTACCATTGATTTCATTGAC
TATTTAATAGTCTATTATTAACCAGAGTGATTAACAGTTTGAAtaataga
aagatttgaataacagaagttcgaataagcgagagtttgctgtaactgtt
ttcataaattcaaaaagtatcaaaatccTAAATTCAATTTCAGTTTCCTC
TTCCTTTTCCTTCCACTTTAAATAATATGAAAGACGAAATATATattact
agccggtacccgcgCCGGCGTCGCAcaccggttaagctgtagctgaacgc
actcaAAGTCCTTttgatgttgaagctggcttaaaaaatgatcaaactaa
taaaaagatgtcttcaaagtttgactctaaccctcccccggagatctttt
tctcgcttcgctcgcattaaatacgccgtccagttttcgacaatttgaga
aaatgtcatggtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNtgttggatttttaacaactctattgtgag
ataataactttgttgatcaaaataagaaaaaggttgccgtaacaagcaca
aaatcctatatttcTAAGGGTCCCTTCTCATAAAATaatcgataaatttc
aaaaagaattctatattacgaataggtaaccttttaattaatgatccatc
agaatttgaaacccccctcccttttagacgtaaagatttataatgaagaa
attttcaaggaaaatgtgctgaaactctcaaaattagcactgtgttcgcc
caaaaatacatcgatatgaaatcatagaactTTTGTAACTTgactttgag
aaaattattttcgtaTCGTgtttgaacaagaactttttgcataataagtt
tatttcaatcaggataacattctcacttctgttcttataaatttacattt
cggatttttttgcttccaatgaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCaacaaagaaaagccgctttgaatagatttataaaagatttcaacgatc
atttaggtcattaccgagacgttttctctccatctatatctttattacct
ctatgatcagatttaaaaagataaataagtcaattctaaattgctttttt
taaacccttgtcataacttttcgaaattaaacatgtaaaatgacgaAGTT
TTTAATAGTATCCAccacttgaaaatttttatatgaagaaaaagatggac
taatttcttctcttgctttttatcgccctttgcTGAAataaaggctgaat
aaagtctaaaccatgCTCTATTCGATCTgtgaatcaaaacaaacttatcg
agaacaaaacattgcttgcgaaatcgaaagtatgcgcgaatccaatagaa
caaatttgtggagcaatagactaaaagtcataattttaaaacacaaacaa
agcgaaaacgaaagtggtgacacacagacacacaaagcaccgctattaat
atatagaagtTAAATTTGAGGTCCAAAATCTTCGAAACCTGCAgatcttc
ttaactttttgagtttttagaaGCTTTACAATGtagtttaaaatttcatt
ttcaccattttgttagTATACTTGTgtaatttcctgaaaattttggGTTT
TTTCGAGACCAAAAAgtaaccttaaaatgttccttatataaagtacatgt
ttttttttataagcattgcacttataagcatatctaggctcagatatggg
gaaaaattaagcatatggcaagcatttgcttgagcctacaaaaaatattt
ttttcctgattttggcttttcttGGCTGGAATTTCACTGATTTTCAGTAT
taccctaaatttatgctttagatttaagcatcccctcaagcatttttcag
cctttttaAGCGTTCGACCTatgcatctctgagcctgttttcggattttt
gtatgcttataaaaaaaaaacatgtaatgtgCTAGCAAGTCGCTGCAGAA
AATTGaaatctgaaaatattatatttcatATTTGCCTATGAATAGGATTA
GGATTGGattaggggtagaaaccaatcaagtagTCAGACTGCTGAAAAAT
AAGGTgaaatgatgaaatggatttacaccattcttataaaaaaaaagcgt
gtagacaAAAGTTCTTAATTAAAAACCCATCTAATGATGTTGAACTGCtt
tgcaaataaaaaatgtaataCGAGATTGTCTGTGTTATCTTTATGTTATT
TGTATGTATTTTATAAAGAGAGACTTTCTGATATTTCGTTGTTGTTGAAG
GGAAAAGCTTGTGAAAGTGCGTTTGGTGAATTGCAACTGAAAGTTCTCAA
CATAGATATTAATATGGATTCTGCACATGGAGACGAGAGAAATTTAGCTC
ACAGTGCAAGTGGGAGAAATGTGCACAAAGTTGCTGACGATCAGCAAATC
ATCAAACTCAGGGAAGAACATGGAAGAGAAATCCAAAAATTGAACTATGA
GTCAAAGATTGAATTGATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAA
AAGACAATCAAACGTTAGGTCATCGATTGGAGATGTTGAAGTTGAAGAAT
TCACATGAAGCTGAAACGAAACAAGTTGCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00071315-exon-scaffold_60-1491911889:1679731..1679775 | TCONS_00071315-exon-scaffold_60-1491911889:1679731..1679775 | Clytia hemisphaerica | exon |
TCONS_00071315-exon-scaffold_60-1510915933:1679731..1679775 | TCONS_00071315-exon-scaffold_60-1510915933:1679731..1679775 | Clytia hemisphaerica | exon |
TCONS_00071315-exon-scaffold_60-1575043694:1679731..1679775 | TCONS_00071315-exon-scaffold_60-1575043694:1679731..1679775 | Clytia hemisphaerica | exon |
TCONS_00071315-exon-scaffold_60-1491911889:1690157..1690412 | TCONS_00071315-exon-scaffold_60-1491911889:1690157..1690412 | Clytia hemisphaerica | exon |
TCONS_00071315-exon-scaffold_60-1510915933:1690157..1690412 | TCONS_00071315-exon-scaffold_60-1510915933:1690157..1690412 | Clytia hemisphaerica | exon |
TCONS_00071315-exon-scaffold_60-1575043694:1690157..1690412 | TCONS_00071315-exon-scaffold_60-1575043694:1690157..1690412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_60 | supercontig | scaffold_60:1679731..1690412 + |
Blast
The following BLAST results are available for this feature:
|