TCONS_00071315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071315
Unique NameTCONS_00071315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071315 ID=TCONS_00071315|Name=TCONS_00071315|organism=Clytia hemisphaerica|type=transcript|length=301bp
AACTGAAAGTTCTCAACATACATAACAATAATATGGATTCTGCACATGGA
GACGAGAGAAATTTAGCTCACAGTGCAAGTGGGAGAAATGTGCACAAAGT
TGCTGACGATCAGCAAATCATCAAACTCAGGGAAGAACATGGAAGAGAAA
TCCAAAAATTGAACTATGAGTCAAAGATTGAATTGATGGAAGCTCAAATG
AAAAATGTCAGTTTGGAAAAAGACAATCAAACGTTAGGTCATCGATTGGA
GATGTTGAAGTTGAAGAATTCACATGAAGCTGAAACGAAACAAGTTGCCG
C
Run BLAST on NCBI

transcript from alignment at scaffold_60:1679731..1690412+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071315 ID=TCONS_00071315|Name=TCONS_00071315|organism=Clytia hemisphaerica|type=transcript|length=10682bp|location=Sequence derived from alignment at scaffold_60:1679731..1690412+ (Clytia hemisphaerica)
AACTGAAAGTTCTCAACATACATAACAATAATATGGATTCTGCACATGGA GACGAGAGAAATTTAGCTCACGTCGCAAGTGGGAGAAATGTGCAAAAAGT TGCTGACGATCAGCAAATCATCAAACTCAAGGAAGAACACGGaagagaaa ttcaaaaattgaattatgaGTCAAAGATTGAATTGATGGAAGCTCAAATG AAAAATGTCAGTTTGGAAAAAGACAATCAAACGTTAGGTCATCGATTGGA GATGTTGAAGTTGAAGAATTCACATGAAGCTGAAACGAAACAAGTTGCCG CTGACAAAGATCTTCAAAATAAACTgactgaaatggaaaaacaactTGCT ATAAAGGACAAGGAGATATCAGACACGAAAAACCAGATGGCAGTTAAGGA AAACGAATGTAAAATAAAACTAATGACAAAAGACCAGGAAATgctggaaa aagaaaatgagatAAAGGAAAAAGATGCGACAATCCAAAcacttcaaaat gaaattgaaaaattgaaaaggagCCACAACCCAACAGAATCTAAAATGGC TgtcacaaaagaaaaacatcctCATCTTTTCACGAAAGAAGAAAAGTTCG CTTGGGGAGCTGATGTTTTCTTCGGATTCAGAGAGATGAGATGGGAGGAA AGTGCTTACGAGTCTTACGAAGCTTGGTATATAGGAATCAGTTCAGTTTT GACAAACCGAAGACAAGTTACTATCATCAGTGATGGaacaaaatatgttt tcatgaAGAAACATGAAAACAAAACTGGTCAAAGACTATTTATTGGATTT AGGGAAAAAGTACGTTATAATTATACAGCGCAAGACTATGAAATAATCTT TGAAGGTCTGAACGAAGAAACGATGAAAAATGGACGATTCCTCCTTCTCC ATCCCAAAGTACCTGAAAAGCGTTTGAATTTTGTGCCATATCATGGTAAT AAGGATTTGAATTGGTGGGATCTCGAAAAGGTTACTGAAGATTATTACTC TGGTAATGAAAAATCTGTAATCATTTTAGTATTTTATAATTAATTTGATC ATCATACATATTTTTAGGATACATTTGACTCTCAAACTTGAacggggaat tttgttcgaattaaagagagattcaaattatagaaaatatttcaagaggA TTTCTCATTGACGGGGgctggaaacaagttcgaattatagaaagatttta ataacagaagttcgaataagcgaaagTTGTGctgtaactgttttcataaa ttcaaaaagtatcaaaatgcTAAATTCAATTTCGGTTTCCTCTTCCTTTT CCTTCCACTTAAAATAATATGAAAGACGAAATATATATTAAGTAAAATTG AGGaagtccaaaattttcgaagcctgcgaaaaaaattttttaggcaaatt tggccaaaaaaacgggtttttcggactttgtgcaaaattggatcattaat tttttttgattttttccatgaaagaaggctaccatcataggtaaaagatg gctgaagcagaattttgcaaaaaaaatttgttggctcaaaaaacgcatgt ttatctataagaattactattaataagcatacatcaatgttcttagtcaa attactcaatttttttatgagatagatgttttttttgctcatgaggattt cattttgaagaatatgtgtgtttagacaggaaatttgggttgcttggcgt gtttttataaaaaaactgaccaaattcgatatttttttataagcacatta tcaattacttaggtattagcttttctcgaggtggatctttcattctttat gatttattgcacaaacatgcataactataaaccctcgaatgtgacggagc ttgatttttggataaaaaaattttggggtaaatttcagctaaaaaacagc taaaaaacgggttttttggactttgtgaaatattggatcattgttttttt ctgatattttgcatgaaagtaggtaaaagatggctcaagcagattttNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcactattaataagc atacatcaatgttcttagccaaattactcaattttttgatgagatagatg tttgtttttgctcacaaagtcttgaatatgaaagaatatatcaagagcat gaaattttggtttctaaacgttttgtttataagaaacaaacgactaattt taatagatcgtcactatttgtgttctgaatgattgtttaatggtcacgtc acgtagatatcaattataaatgtgttaaatgcataaccaggtaggtccat aaaagtatcacttgttaagcCTTAAAAGTAAtttaggattttattttcac tattttgtcaGTATTCTTGTGtaatttcctaaaaaattttaaaaaccaaa aagcaacctaaaaatgttcgtaatataaagtaaaattgataaaattgatt CATAAATAGACACTATTATAtgcttcttaatttttttgtttatcaaagga atatgttcttgtatagtttgttcttataaaaaaggtgtattgcatAAACG AGTGAAACTCTGTTCccttcttaaccctattcaacctaggcttttagagg cggtttaaaaaaaagggggggaaaaaaaacgccccccccccccccctttt taacccctttcaacctaggcttttaggggcggttcagaactggggggggg ggggggcttttcctgtaccactcCTTaatttttgatctagtgggtctttt tggatgaaatttggcacacaagatccttgtcacataaggtaacttttgac aaaaaatttttttgatgacgtcactaatCATGCcgaaagtgagcaaaaac tcaaaatttcctttgttcttaaaAATAGCTATGGTATTCtaaaaaaagct ttagaaaaaagttgcctgagtttaaaatgtttattttatcctagatattc aataaattacggtttaaatgatatatttgacattaaaaataaattcatat tggaaaagtgtcactttttctgacagactttatgtcagaaatgtcatcat gctcaaagtgtgaaaatttttaggtgtcaatttttttttattttaaagct aaataaaagttaggactttacagaaaatttcatggcaaaagctctattat ttcaggagctattaccaataatttgacctacgaacagaaacagccccccc cctaggccgaatagggttaaagtttTCATTATATTGTTAGCAGAAAGGTC TATTTGGGAATATATTTCACAAAAACTTCTTTCCATGAATAATTGTAACC ATGTCAATAAGTTTTCATCAAAAATCTTACTTGAAGTGCAGTTTTACGAA AACTAAACACTTGCCTTGTAACTGTAAAACAGAAGTATCAAATTGAATGT AGATTTTGAgtttagttttattttttactccTGTCTTATAGCCCCTGGTG AAACTTCTTTACACatagtggggatgaaaatttttaattactgtaaGTAG AGGTAATTTTAAGAACTGCTTGAAATCGGGCAATACAAAAATgcatttct tttctttcaatttcttttaacCTTTCGGTACCATTGATTTCATTGACTAT TTAATAGTCTATTATTAACCAGAGTGATTAACAGTTTGAAtaatagaaag atttgaataacagaagttcgaataagcgagagtttgctgtaactgttttc ataaattcaaaaagtatcaaaatccTAAATTCAATTTCAGTTTCCTCTTC CTTTTCCTTCCACTTAAAATAATATGAAAGACGAAATATATATTAAGTTA AATTTGAGGAAGTCCAAAATCTTCGAAACCTGCAgatcttcttaactttt tgagtttttagaaGCTTTACAATGtagtttaaaatttcattttcaccatt ttgtagtTTCCTGAAAATTTTGGGTTTTTTCGAGACCAAAAAGtaatctt aaaatgttccttatataaagtacatgtttttttatcagcattgcacttat aagcatatctaggctcagatatggggaaaaattaagcatatggcaagcat ttgcttgagcctacaaaaaatatttttttcctgataTTGGCTTTTCTTGG CTGGAATTTCACTGATTTTCAGTATtaccctaaatttatgctttagattt aagcatcccctcaagcatttttcagcctttttaAGCGTTCGACCTatgca tctctgagcctgttttcggatttttgtatgcttataaaaaaaaacatgta atgtgCTAGCAAGTCGCTGCAGAAAATTGAAATCTGAAAATATTCATATT TCATATTTGCCTATGAATAGGATTAGGATTAGattaggggtagaaaccaa tcaagtagTCAGACTGCTGAAAAATAAGGTgaaatgatgaaatggattta caccattcttataaaaacaagtaatactttaatggacctacctatttata aaacgaataattagaatttaatggaagtaatgtataattttaaatttcga tttatatatctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGCGTGTAGACAAAAGTTC TTAATTAAAAACCCATCTAATGATGTTGAACTGCtttgcaaataaaaaat gtaataCGAGATTGTCTGTGTTATCTTTATGTTATTTGTATGTATTTTAT AAAGAGAGACTTTCTGATATTTCGTTGTTGTTGAAGGGAAAAGCTTGTGA AAGTGCGTTTGGTGAATTGCAACTGAAAGTTCTCAACATAGATAACAATA ATATGGATTCTGCACATGGAGACGAGAGAAATTTAGCTAACAGTGCAAGT GGGAGAAATGTGCACAAAAGTGCTGACGATGAAGAAATCATCCAACTCAA AGAAGAACATCaaagagaaattcaaaaattgaattatgaGTCAAAGATTG AATTGATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGACAATCAA ACGTTAGGTCATCAATTGGAGATGTTGAAGTTGAAGAATTCACATGAAGC TGAAACGAAACAAGTTGCCGCTGACAAAGATCTTCAAAATAAACTgactg aaatggaaaaacaactTGCTATAAAGGACAAGGAGATATTAGACACGAAA AACCAGATGGCACTCAAAGAAAACCAATGGGAAAACGAATGTAAAATGAA ACTAATGAAAAACGACAAGGAAATgctggaaaaagaaaatgatttcaaaC TTCAAATCAAAGATTTAGAAAGCTCCAAAAAGAACAACAACCAACCGGAA TCTAAAATGGCAgtcataaaagaaaaatatcctCATGTTTTCacgaaaga agaaaagtttgCTTGGGGAGCTGATGTTTTCTTCGGATTCAGAGAGATGA GATGGGAGGAAAGTGCTTACGAGTCTTACGAAGCTTGGTACATAGGAATC AGTTCACTTTTGACAAACAAGAGACAAGTTACTATCATCAGTGATGGaat aaaatatgttttcatgAAGAAACATGCAAACAAAACTTGTCAACAACTAC TTATCGGATTTAGGGAAAAAGTAAGTTATAATTATACAGAGCCAGACCAT CAAATAATCTTTGAAGGTCTGAGCGAAGAAACTATGAAAAATGGACGATT CCTCCTTCTCCATCCCAAAGTACCTGAAAAGCGTTTGAAGTTTGTGCCAT ATCAGTATGATAAGGATTGGTGGAATCTTGAGAATGTTACTGAAGATTAT TACTCTGGTAATGAACAATCTGTAATCATTTTagtattttgaaattaatt tgatCATCATACATATTTTTAGGATACAGTTGACTCTCAAACTCGAACGG GAAATtctatttgttcgaattacagagaatattcaaattatagaaaatat tttaagagggtttctcattgacggggactggaaacaagttcgaattatag aaagatttcaaataacagaagttcgaataagcgagagtttactgtaactg ttttcataaattcaaaaagtatcaaaatccTAAATTCAATTTCGGTTTCC TCTTTCTTTTCCTTCCACTTAAAATAATATGAAAGACGAAATATAAATTA AGTTAAATTGAGAACATCCACAATCTTCGATGTCTGTGAATGTTCttacc tttttgagtttttaagctTTACAATATAgtttaaaactttattttcacca ttttgtgagtattcgtGTGTAATTTCCTTAAGAATTTTGATCTTTTAGAG ACCAAAAAgcaaccttaaaatgttcttaatataaAGTAATGTGCTATAAA GTCGCTGCAGAAAATTGAAATCTGAAAATATTCATAAATAGACACTATTa tatactttttaattttttgcctGATCAAAGCAatatgttcttgtatagtt tgttcttataaaaaaagtgtattgcgTAAACGAGTGAAATTCATTATATT GTTAGCAGACAGGTCTATTTGGGAATATATTTCACAAAAACCTCTTTCCA TGAATAATTGTTACTATGCCAATAAGTTTTCatcaaaaatctaatttgaa GTGCAGTTTTACGAAAACTTGTAACTGCAGAAAACAGAAGTATCAGATTG AATGTAGATTTGGAgtttagttttattttttactccTGTCTTATAGCCCC TGGTGAAACTTCTTTACACATAGTgtggatgaaaatttttaattactgta aaTAGAGGTAATTAAGAACTGTTTGAAATCGGGCAATACAAAAATgcatt tcttttctttcaatttcttttaacCTTTCGGTACCATTGATTTCATTGAC TATTTAATAGTCTATTATTAACCAGAGTGATTAACAGTTTGAAtaataga aagatttgaataacagaagttcgaataagcgagagtttgctgtaactgtt ttcataaattcaaaaagtatcaaaatccTAAATTCAATTTCAGTTTCCTC TTCCTTTTCCTTCCACTTTAAATAATATGAAAGACGAAATATATattact agccggtacccgcgCCGGCGTCGCAcaccggttaagctgtagctgaacgc actcaAAGTCCTTttgatgttgaagctggcttaaaaaatgatcaaactaa taaaaagatgtcttcaaagtttgactctaaccctcccccggagatctttt tctcgcttcgctcgcattaaatacgccgtccagttttcgacaatttgaga aaatgtcatggtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNtgttggatttttaacaactctattgtgag ataataactttgttgatcaaaataagaaaaaggttgccgtaacaagcaca aaatcctatatttcTAAGGGTCCCTTCTCATAAAATaatcgataaatttc aaaaagaattctatattacgaataggtaaccttttaattaatgatccatc agaatttgaaacccccctcccttttagacgtaaagatttataatgaagaa attttcaaggaaaatgtgctgaaactctcaaaattagcactgtgttcgcc caaaaatacatcgatatgaaatcatagaactTTTGTAACTTgactttgag aaaattattttcgtaTCGTgtttgaacaagaactttttgcataataagtt tatttcaatcaggataacattctcacttctgttcttataaatttacattt cggatttttttgcttccaatgaNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NCaacaaagaaaagccgctttgaatagatttataaaagatttcaacgatc atttaggtcattaccgagacgttttctctccatctatatctttattacct ctatgatcagatttaaaaagataaataagtcaattctaaattgctttttt taaacccttgtcataacttttcgaaattaaacatgtaaaatgacgaAGTT TTTAATAGTATCCAccacttgaaaatttttatatgaagaaaaagatggac taatttcttctcttgctttttatcgccctttgcTGAAataaaggctgaat aaagtctaaaccatgCTCTATTCGATCTgtgaatcaaaacaaacttatcg agaacaaaacattgcttgcgaaatcgaaagtatgcgcgaatccaatagaa caaatttgtggagcaatagactaaaagtcataattttaaaacacaaacaa agcgaaaacgaaagtggtgacacacagacacacaaagcaccgctattaat atatagaagtTAAATTTGAGGTCCAAAATCTTCGAAACCTGCAgatcttc ttaactttttgagtttttagaaGCTTTACAATGtagtttaaaatttcatt ttcaccattttgttagTATACTTGTgtaatttcctgaaaattttggGTTT TTTCGAGACCAAAAAgtaaccttaaaatgttccttatataaagtacatgt ttttttttataagcattgcacttataagcatatctaggctcagatatggg gaaaaattaagcatatggcaagcatttgcttgagcctacaaaaaatattt ttttcctgattttggcttttcttGGCTGGAATTTCACTGATTTTCAGTAT taccctaaatttatgctttagatttaagcatcccctcaagcatttttcag cctttttaAGCGTTCGACCTatgcatctctgagcctgttttcggattttt gtatgcttataaaaaaaaaacatgtaatgtgCTAGCAAGTCGCTGCAGAA AATTGaaatctgaaaatattatatttcatATTTGCCTATGAATAGGATTA GGATTGGattaggggtagaaaccaatcaagtagTCAGACTGCTGAAAAAT AAGGTgaaatgatgaaatggatttacaccattcttataaaaaaaaagcgt gtagacaAAAGTTCTTAATTAAAAACCCATCTAATGATGTTGAACTGCtt tgcaaataaaaaatgtaataCGAGATTGTCTGTGTTATCTTTATGTTATT TGTATGTATTTTATAAAGAGAGACTTTCTGATATTTCGTTGTTGTTGAAG GGAAAAGCTTGTGAAAGTGCGTTTGGTGAATTGCAACTGAAAGTTCTCAA CATAGATATTAATATGGATTCTGCACATGGAGACGAGAGAAATTTAGCTC ACAGTGCAAGTGGGAGAAATGTGCACAAAGTTGCTGACGATCAGCAAATC ATCAAACTCAGGGAAGAACATGGAAGAGAAATCCAAAAATTGAACTATGA GTCAAAGATTGAATTGATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAA AAGACAATCAAACGTTAGGTCATCGATTGGAGATGTTGAAGTTGAAGAAT TCACATGAAGCTGAAACGAAACAAGTTGCCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044320XLOC_044320Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071315-exon-scaffold_60-1491911889:1679731..1679775TCONS_00071315-exon-scaffold_60-1491911889:1679731..1679775Clytia hemisphaericaexon
TCONS_00071315-exon-scaffold_60-1510915933:1679731..1679775TCONS_00071315-exon-scaffold_60-1510915933:1679731..1679775Clytia hemisphaericaexon
TCONS_00071315-exon-scaffold_60-1575043694:1679731..1679775TCONS_00071315-exon-scaffold_60-1575043694:1679731..1679775Clytia hemisphaericaexon
TCONS_00071315-exon-scaffold_60-1491911889:1690157..1690412TCONS_00071315-exon-scaffold_60-1491911889:1690157..1690412Clytia hemisphaericaexon
TCONS_00071315-exon-scaffold_60-1510915933:1690157..1690412TCONS_00071315-exon-scaffold_60-1510915933:1690157..1690412Clytia hemisphaericaexon
TCONS_00071315-exon-scaffold_60-1575043694:1690157..1690412TCONS_00071315-exon-scaffold_60-1575043694:1690157..1690412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1679731..1690412 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.385149 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.376834 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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