TCONS_00071312 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071312
Unique Name	TCONS_00071312
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1955

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_60:1645122..1651930+

transcript sequence

>TCONS_00071312 ID=TCONS_00071312|Name=TCONS_00071312|organism=Clytia hemisphaerica|type=transcript|length=1955bp
ATTTATTGAGACTTTTTTATTGCTGCAAAGCTAGTGTATCTGAACTAAAA
CATCCACACAATCATCATGGCTGCAAGACAACAATTGAACAATTTTAAAG
ATGCCCGCCAATGTCCTTTCCAACTGACCACGGAGACTGGTGCTCCAATG
GAAACCAAAACAGCCACAATGACCCTTGGCCCAAGAGGTCCAGTCCTCAT
CCAAGACAACAACTTTATTGAGGACATGGCACGTTTTGATCGTGAACGTA
TCCCAGAACGTGTCGTGCACGCGAAAGGGGCCGGTGCCTTCGGATATTTT
GAATGTACTCATGACGTGACTAAATACACCAAATTGGCACCGTTCGCTCA
AATCGGAAAGAAAACTGATGTTTCTGCCCGATTCTCAACTGTtgGTGGTG
AATCAGGAAGTGCTGACACTGCTCGTGATCCACGTGGTTTTGCTGTCAAA
TTCTACAGTGAAGAAGGAAACTGGGACCTAGTTGGAAACAACACGCCCAT
CTTCTTCATTCGGGATCCAATTCTTTTCCCAAGTTTCATTCACACTCAAA
AAAGAAACCCAAGAACTCATTTAAAGGACCCTGACATGTTCTGGGACTTC
ATCAGTTTGAGACCAGAAACGACACATCAAGTGATGTTTTTGTTCAGTAA
CCGTGGAACACCAGACGGTTATCGTCACATGAATGGATATGGATCTCACA
CCTTTAAATTGGTCAATGCTGAGAATGAGTATTGCTGGTGCAAATTCCAT
TTCAAGACTGACCAAGGCATTAAGAACTTTTCTGCATCTGAAGCTGAAGT
TTTGGCTGGAAGAAATCCTGATTACGCCATCCAAGATCTTTATAATTCCA
TCGCTAAAGGAGACCATCCATCATGGTCATTACAAATTCAAGTGATGAGC
AAAGAAGAAGCAGAACAAGAAGAAATGAACCCCTTCGATTTGACCAAAAT
TTGGTCACATGAAAAATACCCAATGATTCCAGTCGGAAGATTGGTGTTGG
ATCGCAATCCTCGAAATTACTTCCTTGATGTCGAACAAAGTGCTTATTCA
CCAGCTCACATGATTCCTGGTGTAGATTCTTCCCCTGATAAAATGTTGCA
AGGACGTTTGTTCTCTTACGGAGACACTCACCGTCACCGTCTCGGTGCAA
ACTACAATCAATTACCTGTCAACAGACCACGTTGCCCCGTACGCACGTAC
GCACGTGACGGCCCACAATGCTTTGAACAAGACGATGCTCCAAACTATTT
CCCAAACAGCTTCAGTGGGCCGCAAGAACAAAGACAAGAAGCTCATGTCG
GAATCAAGcACGAGGGCATTGAAGGGCGTTACCAATCCAGTGATGAAGAC
AACTTCAGTCAACCAGCTATCTTCTGGTCTAAAGTTCTTGATGAAAAAGA
ACAGAATGACTTGGTTGCCAATTTGGCTGGTCACTTGAAGGATGCACAGA
AATTTATCCAAGAAAGAGCTATTGGCAACTTTGCCAAAGTCAATGttgat
tttggacaaaaacTTCGTGAAGCAGTTGATGCTTACAAATCATCTCAATT
GTAAATCGAGAAAATTTACCAATCGAACCTTCGTTGACTCGTTAACGATA
TTTGTTTTTGTTATATGCATTTTTTTTCGGGGAACAAGATTGTATAATTT
ATATTTTAATACTATAGCTTACACCACAACAACATTGACAAACTAAACGG
TCAGATAAATAGCTTCATCATTCAGCCTTACATTATATCCTTCAAGAATA
CATaattaattttgttaaattcaGTAATTATTCTTTTTATCACGCAATTA
CGACGTTCAATTATACCTATACCTCTGATTTTGAATAATTATCATATTTT
TCGTCTTTTTCTTCATACTACTTGtcatttgtaaatattttataaGATAA
TCGATAATAATCTGTCttcaaagatgaaaaagaaatattcaacTTTAAAT
TCctt

Run BLAST on NCBI

transcript from alignment at scaffold_60:1645122..1651930+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071312 ID=TCONS_00071312|Name=TCONS_00071312|organism=Clytia hemisphaerica|type=transcript|length=6809bp|location=Sequence derived from alignment at scaffold_60:1645122..1651930+ (Clytia hemisphaerica)
ATTTATTGAGACTTTTTTATTGCTGCAAAGCTAGGTAGGTAAAGCACTGT
ggactttttgttttattcgGAGTGATTAGGGAAAACCTTTAAAGCTATGC
AATTCAGCAGGCTGCAGAGTGCAAtttgataattgtgttgtttagaATGG
CCTTCAAGTGATATGATAGAATCGGAATTCTCCTTTTATATGAGATTTTG
TGACAacatttttgcttttaaataaCTATGGCATATTGTTAACAGGAAAT
AAGTGTTAAGCTACAAGGACTAATTAATAAATGTCAAATTGCGTTTTTTT
ATAACTTGTCTCTCTGTTGCCTGATAATTGAACTCCTGCTCATTACTGAA
GTGGATTTTTATTACCTTTCGCATTTTTCAAAGGGAGAGAAATTCAAGTT
ACGACCATCATTGTCTGTTAAGTGTTTACCATCCTGGCATTAATTTACAC
ACGACGATAATTATCTTTGAACTATCAAAATGGATTATGAAACAACAGCA
TGGAATTATTCGTTAAATTCTCTCTGCTGGATGAATTTCTGTATAAATAG
ATCACTATTTGCTGAATTTGTCGTGAAGATATAAGTTTAAAGTACCCCGT
TGAGGCAACACTGACcagaatttcattaaatttctcGTTATAGTGTATCT
GAACTAAAACATCCACACAATCATCATGGCTGCAAGACAACAATTGAACA
ATTTTAAAGATGCCCGCCAATGTCCTGTAAGTTGCTTTCAAATGCTTCAG
GAAGTGTATTTGTGTCGAATACTGCTGTATCTATCAACTCTTACATAGTT
CTATTTCAAATGTTCTTCTCCAGAAATCGGATAGAATAGCAACGCTGCAA
AATTCCGCAATTTTAGCTTTATCTAATTCCGCAACGTTATTAGATTTCAC
CCCTGTGGAAGCGTTTCAAAAAACATTCAGCTGAACTTCTATTGAAACTT
TGCTATGTACCACTTGCAAGCCATTTAATAACAACGTCAAAATAACGCAC
ATCCAatgttatttgaacgttaaaacaattTGTCTTTTTTCCACCCGGGA
TAGCTAACTACGTAGAAATCTAAACTTCGAAACTATCGAGTTCATTTCGT
GGTATTTTTgtcgaaagtaaaaaaaaaaaaaaaatacagaatATATCTCA
ATTGTTTCTTCTTTAAATATAGTTCCAACTGACCACGGAGACTGGTGCTC
CAATGGAAACCAAAACAGCCACAATGACCCTTGGCCCAAGAGGTCCAGTC
CTCATCCAAGACAACAACTTTATTGAGGACATGGCACGTTTTGATCGTGA
ACGTATCCCAGAACGTGTCGTGCACGCGAAAGGGGCCGGTGCCTTCGGAT
ATTTTGAATGTACTCATGACGTGACTAAATACACCAAATTGGCACCGTTC
GCTCAAATCGGAAAGAAAACTGATGTTTCTGCCCGATTCTCAACTGTtgg
taagatttttttaagtGGGTTATGTATTTATATACCAAGTTTGAGACTGG
CTGCTCAGCTACTTGGCTTATTGAGAAGTTATTGATATTCTTGTTGTAAC
ATAGCCTTGACATTATCAGGATGTTACAAAAAACCCATCCTTTCAAAACG
CATTACTCATGATCTAATCTAGaattatgaaaaatctttttgaattattg
tgaGTGACTTTAGCAATTCAACTTTTGAGTTATTCATTAACGATACGGAA
TTTTAATATCGAGTTTAGTTAACTTTGTACGTTATGGGACACCTTTTGTT
CAAAACTTTTCATGATTTCCTTCTTTCAGGTGGTGAATCAGGAAGTGCTG
ACACTGCTCGTGATCCACGTGGTTTTGCTGTCAAATTCTACAGTGAAGAA
GGAAACTGGGACCTAGTTGGAAACAACACGCCCATCTTCTTCATTCGGGA
TCCAATTCTTTTCCCAAGTTTCATTCACACTCAAAAAAGAAACCCAAGAA
CTCATTTAAAGGTATATTTTTAGAGAAGGTTTTACCGTTCTGCATCATCT
CATCATTATCTCTTCTCTTTGGTCTAAAAGTGAAATCTACTATGTTTATT
CTCTCACCCTTATCATATTAGCCAGTTAGTTATTTTTAGTGTTGTTGATA
TGTTTAAAATCAGACAAATAACAAAGACCATACCTTTTTTTCTACAAAGC
CTACCCTAAAtagttttcaaatttgatcaTTATCTAGGACCCTGACATGT
TCTGGGACTTCATCAGTTTGAGACCAGAAACGACACATCAAGTGATGTTT
TTGTTCAGTAACCGTGGAACACCAGACGGTTATCGTCACATGAATGGATA
TGGATCTCACACCTTTAAATTGGTCAATGCTGAGAATGAGTATTGCTGGT
GCAAATTCCATTTCAAGGTATAATATCAATATGAATCTCAAATCGTTCTT
AAATACAATATTGTCGTTAAAGCTGAGGTGTGCTCCTCCATCCTGCCATT
TTCTCGGAGTAGTAAATAATCCAAATTTCTCCTTGAAGCTTAATCTGAAC
TCTGCTTATTCAGCATTATTTTCCTTATGCTACACGCCCTTACCAAAAGA
AATTACATATTATCAGACATCGCTTTTTCCTAAACAAATAATCAAACGTT
CACAATTCTCCTTTTCTAGACTGACCAAGGCATTAAGAACTTTTCTGCAT
CTGAAGCTGAAGTTTTGGCTGGAAGAAATCCTGATTACGCCATCCAAGAT
CTTTATAATTCCATCGCTAAAGGAGACCATGTAAGAAACAAACATGACCT
AATAATGTCTAAAGGAGACGAGAtggagcttttacaagctcttatttgat
ttggttggtcgttaaccagtaatagaacaattttgttactttttctaaag
aacgcgtcctttttatcatttcaaatgaccaattattaaagtatcttata
aaaactctaaTCTCATCTGGTCTAAAGTCATGGTGCAATTATGTATAATT
ATGAAGGTTTCgctttatttttcactttactTTTCGCGTTCTGCATGCAT
TAGAAATATGAACtctgaattttcttttactGAGAGATCTCTTTAACGCT
TTGACAACTTTTTACACTTGAGCCTGACAATGATTTAAGTTACACTTTAC
GATCAGAATTTTAACTTAAAGGTTTtacttttacataagtgttcccgttt
catgttGTTAGATTATGCTGatgtaagcaaaaaatgtttttcttttcctc
tttttgaccaaacttgctccacattcgtgtcgaTTCGATGTGAAAAAAGC
CTGCGAATTAAAATTAATGAGTAAGTAAACGCTATCactcttattttaaa
aacaaaacctttaacgaaaaactaatttgaatttcttctttgatTCTTTT
CAGCCATCATGGTCATTACAAATTCAAGTGATGAGCAAAGAAGAAGCAGA
ACAAGAAGAAATGAACCCCTTCGATTTGACCAAAGTAAGTCTTCATATAT
GAATCATATTGAGCTGATATTATATATTCTTTGTCTGAAAACCTTTTATT
TTACGGCAAGAAACTTATAATTGCTGTGCTAAAATCGGCTAACTGATGTT
TAACCATAGATATTGACTGCGTAGACATTATCATAAATTACATTtgtctc
ttttttatttttaacagaGACCTTTCAAAATCATACTGACTGTCTAACAC
GAAGCAGCGGCAATTTGTGTTacgataaaaaaaaaagacttcgCACACCG
ACTATGGTTATTATGGACCTTTCCCGAACCTTCCTAATCCGAAGTCTTCT
ATTAAATAATcaatattcttttgtttttcaacaATAGATTTGGTCACATG
AAAAATACCCAATGATTCCAGTCGGAAGATTGGTGTTGGATCGCAATCCT
CGAAATTACTTCCTTGATGTCGAACAAAGTGCTTATTCACCAGCTCACAT
GATTCCTGGTGTAGATTCTTCCCCTGATAAAATGTTGCAAGTATGTTCTA
TTTGTTTTGTCCTTGAGTTTTCCTGCTTATTACTCTAGTAGGATTCTTGA
AAGAAGATTTGGCTTAGTCTatacaatagacagctccaggttTTTAGACT
TTACTCTAGAATGAGAGTTTTACGCTCGTTAAGCAAAGAAAGATATGATG
TACTTTAATTTGGCTGTGTTCTCCAAAAGATGATAAAATCTTTTTGTCTA
AATGttgataataatttttatttgatttttgcaAGGAGATGTTTTACTAt
cgttttatttattttaaaggtCTACATAATTTTATGATATAAATTTAATA
GTAATTCTTTCATATAAATTTATACCTTCAGTTCTCTATACTATTAAGCT
AATAAGCTAAGTTGAATGCCAACCTTgcggttgaaaaaaaaagaaaaatc
tgcTATATCACCATAGTAAAACGAAGAGAACTTTCTTATGAatttcaaat
atcttttttcataGGGACGTTTGTTCTCTTACGGAGACACTCACCGTCAC
CGTCTCGGTGCAAACTACAATCAATTACCTGTCAACAGACCACGTTGCCC
CGTACGCACGTACGCACGTGACGGCCCACAATGCTTTGAACAAGACGATG
CTCCAAACTATTTCCCAAACAGCTTCAGTGGGCCGCAAGAACAAAGACAA
GAAGCTCATGTCGGAATCAAGGTAATTTTCAAACTATACCATATCATACT
TTGGAAGCCTTCCCAGCagacacacaacgttatttcaacgttcatctaac
gttatatggacgttgaaacgacgttgtgtgccagctgggttattcaactt
tctgaaaaatacCTTTACTTTAACCGTTCATTAGTTCATCACCagttatt
gatttttttgttctttttttagcACGAGGGCATTGAAGGGCGTTACCAAT
CCAGTGATGAAGACAACTTCAGTCAACCAGCTATCTTCTGGTCTAAAGTT
CTTGATGAAAAAGAACAGAATGACTTGGTTGCCAATTTGGCTGGTCACTT
GAAGGATGCACAGAAATTTATCCAAGAAAGAGCTGTATGTATTTTTGTTC
AGGTTTTAACAATCTCATACCTTCCTCTAAACAGCATTGAATCTACAGCC
GATTGGTGATgctttgatgattttgatgatatcaAATGAGCTCTTACCCT
TATTTGCTGTTTtcacattttgattttattaaagGCTTTTAACTAAGTAA
GTCTGCAATCACAGTTGGGGGGGGACCCGAAGGCTTCTATTTCGATAGCT
ATATTtatctacctgaaggtaggggagggcgccactctttctccctggat
tgctccacttacccttgatctgtCTCTCTTAAAAGCAGAGATGCATCAAG
TACCATTATGGGAATCTTCGGTATGACCCGACTGGggccttgcgaaccgt
agccggatgctcttcaactgcactacggtcgcttagAAGAGTTTTACGTA
TGGATGTCTTTATCGGAAGGGCTGTATAAAATCAAGTATGCGAATATAAT
TAAATAtccattgttcttatattttcttatcttttttttcGTTGCAGATT
GGCAACTTTGCCAAAGTCAATGttgattttggacaaaaacTTCGTGAAGC
AGTTGTAAGTTGCTTGTCTATTTCCCATAATTTCTGTAGAAAACATATGC
CTGAAAAGTGAAACGAATTTTCCCAGGATAAGTTGTTCTTGAGGGTgtag
atgaatttttttttcaatgatatGCCCGCAGACACTTTTTGCAAAAGTCG
TTACTAGGAACCATAGCTATTATCTCTTGGAGAGTACAGAATTAATgaat
tatgattttttagatctCCCCagctacaatcagggacaaaatatttggca
caaaagggaaattcaccggggtgttttgaaaccacaatcgatttgtaagt
gctctaaagtaggttcgaagggtaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNgaagggtagagttttaactctgagttt
taacNNNNNNAttaggaccttaggatgtgaggatccaaaagttcaaaaat
ggtctagtagggcttgaaatatagcctagaaacccataaatccctcccag
atcgaaatacttgatcaaatcaagttgaaggcctaaaaattgacattctc
gctcgaacttcaattttcgaaaaaattgtaaattagccgaaagtgccaat
atattatgaccctgattgtagcacacaacgttctttcgacgtttatctaa
cgttcacaacgtccgtAAAACGTTGGATGAACgtgaaaacaaagttttgt
gccagctgggtctcGCCATTTATGCCCTTCACGTTTTTCAAATCATTGAT
GATTTATTTGTTTTCCTTCTCTTTTTTTTAGGATGCTTACAAATCATCTC
AATTGTAAATCGAGAAAATTTACCAATCGAACCTTCGTTGACTCGTTAAC
GATATTTGTTTTTGTTATATGCATTTTTTTTCGGGGAACAAGATTGTATA
ATTTATATTTTAATACTATAGCTTACACCACAACAACATTGACAAACTAA
ACGGTCAGATAAATAGCTTCATCATTCAGCCTTACATTATATCCTTCAAG
AATACATaattaattttgttaaattcaGTAATTATTCTTTTTATCACGCA
ATTACGACGTTCAATTATACCTATACCTCTGATTTTGAATAATTATCATA
TTTTTCGTCTTTTTCTTCATACTACTTGtcatttgtaaatattttataaG
ATAATCGATAATAATCTGTCttcaaagatgaaaaagaaatattcaacTTT
AAATTCctt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044318	XLOC_044318	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:1645122..1651930 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.033	26.3822	39.8197	34.0863	19.4541	13.7991	45.484	45.4575	110.094	137.996	172.999	89.8637	346.633	336.941	423.276	455.148	158.458	169.216	317.787	244.858	89.4299	97.3398	71.7071	100.721	125.082	221.318	92.7225	171.725	172.299	114.955

Blast

[Close]

BLAST of TCONS_00071312 vs. Swiss-Prot (Human)
Match: CATA (Catalase OS=Homo sapiens GN=CAT PE=1 SV=3)

HSP 1 Score: 639.032 bits (1647), Expect = 0.000e+0
Identity = 302/497 (60.76%), Postives = 379/497 (76.26%), Query Frame = 1

Query:   73 ARQQLNNFKDAR--QCPFQLTTETGAPMETKTATMTLGPRGPVLIQDNNFIEDMARFDRERIPERVVHAKGAGAFGYFECTHDVTKYTKLAPFAQIGKKTDVSARFSTVGGESGSADTARDPRGFAVKFYSEEGNWDLVGNNTPIFFIRDPILFPSFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQVMFLFSNRGTPDGYRHMNGYGSHTFKLVNAENEYCWCKFHFKTDQGIKNFSASEAEVLAGRNPDYAIQDLYNSIAKGDHPSWSLQIQVMSKEEAEQEEMNPFDLTKIWSHEKYPMIPVGRLVLDRNPRNYFLDVEQSAYSPAHMIPGVDSSPDKMLQGRLFSYGDTHRHRLGANYNQLPVNRP-RCPVRTYARDGPQCFE--QDDAPNYFPNSFSGPQEQRQEAHVGIKHEGIEGRYQSSDEDNFSQPAIFWSKVLDEKEQNDLVANLAGHLKDAQKFIQERAIGNFAKVNVDFGQKLREAVDAYKSSQ 1548
            A  Q+ ++K+ R  Q    LTT  G P+  K   +T+GPRGP+L+QD  F ++MA FDRERIPERVVHAKGAGAFGYFE THD+TKY+K   F  IGKKT ++ RFSTV GESGSADT RDPRGFAVKFY+E+GNWDLVGNNTPIFFIRDPILFPSFIH+QKRNP+THLKDPDM WDF SLRPE+ HQV FLFS+RG PDG+RHMNGYGSHTFKLVNA  E  +CKFH+KTDQGIKN S  +A  L+  +PDY I+DL+N+IA G +PSW+  IQVM+  +AE    NPFDLTK+W H+ YP+IPVG+LVL+RNP NYF +VEQ A+ P++M PG+++SPDKMLQGRLF+Y DTHRHRLG NY  +PVN P R  V  Y RDGP C +  Q  APNY+PNSF  P++Q       I++ G   R+ ++++DN +Q   F+  VL+E+++  L  N+AGHLKDAQ FIQ++A+ NF +V+ D+G  ++  +D Y + +
Sbjct:    8 ASDQMQHWKEQRAAQKADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVRAFYVNVLNEEQRKRLCENIAGHLKDAQIFIQKKAVKNFTEVHPDYGSHIQALLDKYNAEK 504

The following BLAST results are available for this feature:

BLAST of TCONS_00071312 vs. Swiss-Prot (Human)

BLAST of TCONS_00071312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CATA	0.000e+0	60.76	Catalase OS=Homo sapiens GN=CAT PE=1 SV=3	[more]

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TCONS_00071312 (transcript) - C. hemisphaerica