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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071311 ID=TCONS_00071311|Name=TCONS_00071311|organism=Clytia hemisphaerica|type=transcript|length=2087bpRun BLAST on NCBI protein sequence of TCONS_00071311-protein >TCONS_00071311-protein ID=TCONS_00071311-protein|Name=TCONS_00071311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp MAARQQLNNFKDARQCPFQLTTETGAPMETKTATMTLGPRGPVLIQDNNFRun BLAST on NCBI transcript from alignment at scaffold_60:1638555..1651930+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071311 ID=TCONS_00071311|Name=TCONS_00071311|organism=Clytia hemisphaerica|type=transcript|length=13376bp|location=Sequence derived from alignment at scaffold_60:1638555..1651930+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:1638555..1651930+ >TCONS_00071311 ID=TCONS_00071311|Name=TCONS_00071311|organism=Clytia hemisphaerica|type=CDS|length=16368bp|location=Sequence derived from alignment at scaffold_60:1638555..1651930+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071311 vs. Swiss-Prot (Human)
Match: CATA (Catalase OS=Homo sapiens GN=CAT PE=1 SV=3) HSP 1 Score: 639.032 bits (1647), Expect = 0.000e+0 Identity = 302/497 (60.76%), Postives = 379/497 (76.26%), Query Frame = 1
Query: 205 ARQQLNNFKDAR--QCPFQLTTETGAPMETKTATMTLGPRGPVLIQDNNFIEDMARFDRERIPERVVHAKGAGAFGYFECTHDVTKYTKLAPFAQIGKKTDVSARFSTVGGESGSADTARDPRGFAVKFYSEEGNWDLVGNNTPIFFIRDPILFPSFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQVMFLFSNRGTPDGYRHMNGYGSHTFKLVNAENEYCWCKFHFKTDQGIKNFSASEAEVLAGRNPDYAIQDLYNSIAKGDHPSWSLQIQVMSKEEAEQEEMNPFDLTKIWSHEKYPMIPVGRLVLDRNPRNYFLDVEQSAYSPAHMIPGVDSSPDKMLQGRLFSYGDTHRHRLGANYNQLPVNRP-RCPVRTYARDGPQCFE--QDDAPNYFPNSFSGPQEQRQEAHVGIKHEGIEGRYQSSDEDNFSQPAIFWSKVLDEKEQNDLVANLAGHLKDAQKFIQERAIGNFAKVNVDFGQKLREAVDAYKSSQ 1680
A Q+ ++K+ R Q LTT G P+ K +T+GPRGP+L+QD F ++MA FDRERIPERVVHAKGAGAFGYFE THD+TKY+K F IGKKT ++ RFSTV GESGSADT RDPRGFAVKFY+E+GNWDLVGNNTPIFFIRDPILFPSFIH+QKRNP+THLKDPDM WDF SLRPE+ HQV FLFS+RG PDG+RHMNGYGSHTFKLVNA E +CKFH+KTDQGIKN S +A L+ +PDY I+DL+N+IA G +PSW+ IQVM+ +AE NPFDLTK+W H+ YP+IPVG+LVL+RNP NYF +VEQ A+ P++M PG+++SPDKMLQGRLF+Y DTHRHRLG NY +PVN P R V Y RDGP C + Q APNY+PNSF P++Q I++ G R+ ++++DN +Q F+ VL+E+++ L N+AGHLKDAQ FIQ++A+ NF +V+ D+G ++ +D Y + +
Sbjct: 8 ASDQMQHWKEQRAAQKADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVRAFYVNVLNEEQRKRLCENIAGHLKDAQIFIQKKAVKNFTEVHPDYGSHIQALLDKYNAEK 504 The following BLAST results are available for this feature:
BLAST of TCONS_00071311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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