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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071310 ID=TCONS_00071310|Name=TCONS_00071310|organism=Clytia hemisphaerica|type=transcript|length=1727bp
GGGAGACCTGGCAGAAGAGATGCcgttgaaaaatttaaacgacGAAAACG
ATGAAGAGGGAGGGGAAATAAAGAAATACAAATGGTATAACATCAATTGG
AACACACTTCCGGCAAAAGCTGCCTTCTTCTTTGACACAGCACGAAGAGT
TGGGTCCTTACCAAGTCTTGTGTTGTTCTTGACTGGCATTGGTTTAGATA
AAGTGGAAGCTGGCCTTATTCTTGGATTCAGGCTTCTTGGAATGCTCTTT
GGAGGACCATTTTGGGGAGTGATTGCAGACAAGTTTCATTGTCATCGTTT
GATCCTTATCATTAATTGTATTGGAATTATTTTGACAATGGGTTGTCAAC
CTTTGTTAGCCATCAAATATGGTAACCCTGTCATCAACAAATGCCCTGAA
CCAACGTGGAGTCAATTTGTCAACAATCTCAATCAAACCAATAATTCCAC
TTTGGACGGACAATCCATAAATCAAAAACAAGATATGTACGGGACTCCAT
TTTTCGTCTTTTTCTTCACACAAATCTTAGCCGCGTTTTTCGAGGTCAGT
GGAGCATCCTTTATAGACGTAGCAACGATCAGAAAATCTCAACTCAGTAA
ACACCGAAAGATCGATTATGGTCGGCAACGATTCTGGGGTCCAATTGGAG
CTATCTTCGGAGTTAACATGACAAATCTGATTATTGACTATTTCCCCAAA
GTAAGCATCACTTGCTATTCAGGGCTGTTCGTTACGTACGTGCTGTTTAC
GATCTTAATGACTGTTTGTTTACTCGTCTTGTATAACGGACTATCTTTCG
AAGATGAGAACCATACGatgaacgaaaaagaaaaacaatgttttcgaaaa
acatttcgTAGACATTTGATTCAGTTCGAAGTGATACTTGTTTATGGAAT
TGCGTTTTTCGGTGGTGTTGTATATAGCTCAtacaaagttttaaattttc
tctACTTGAAGGAACTCTCCTCTCCCTCTCTCGTAAGAACACTTACAATA
TCAATCGCCggattttcagccatttttggaTTCTTCTTTTCAGGCAAAAT
CATTCGGATTCTAGGTGGTCCGTTGATATCTCTGATGGTTGCcttaatat
tttttgttgtaCGTTACCTTGGATACACATTTGCACCAACTGGATGGATT
CTATTAGCTTTTCAACCATTgcattttttaagttttgtgCTTTTTGTGAC
GTCAGCTATTACTTATGTGAAAGAAACCAGTCCCTTAATTGTGATTACGA
GCATGGTTTCCCTCTTCCAAACAATGTTCGAAGGAGTTGGAGTTTTGGTT
GGGTCAAGCATTGGAGGTGttcttttcaaaaactatggAGGACGGAAGGT
GTATCTTATTTACGCATTTTTCGCCTTGTTTTGGGCTATGGTTCTGGGtg
tttatattttcatattcaAAGACAAGAATAAAAACACTACAAAATCGGAA
AAGAATGATGAGAGTACAACATATGAAAATGACACAACGTGTTGATAGGG
TCAAGGAATTGATTTAGAACGCTATCCGAGTTTCTGGATGAAACAAGAGA
ACGCGACTGCGCGTTTAACAGCAGTGACTCCAcctgtttggtttggtttg
gttCTGGAGAATCATTGTACCAAGTGGTGGCTAGTGGTGCGAACTTTTTT
TCGGTTCTTTTGATGGTTTTATtgattttacaattttcttggAAACATAT
TTAAATCTGTGGGTATTTCTTCTGGCG Run BLAST on NCBI protein sequence of TCONS_00071310-protein >TCONS_00071310-protein ID=TCONS_00071310-protein|Name=TCONS_00071310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp
GDLAEEMPLKNLNDENDEEGGEIKKYKWYNINWNTLPAKAAFFFDTARRV
GSLPSLVLFLTGIGLDKVEAGLILGFRLLGMLFGGPFWGVIADKFHCHRL
ILIINCIGIILTMGCQPLLAIKYGNPVINKCPEPTWSQFVNNLNQTNNST
LDGQSINQKQDMYGTPFFVFFFTQILAAFFEVSGASFIDVATIRKSQLSK
HRKIDYGRQRFWGPIGAIFGVNMTNLIIDYFPKVSITCYSGLFVTYVLFT
ILMTVCLLVLYNGLSFEDENHTMNEKEKQCFRKTFRRHLIQFEVILVYGI
AFFGGVVYSSYKVLNFLYLKELSSPSLVRTLTISIAGFSAIFGFFFSGKI
IRILGGPLISLMVALIFFVVRYLGYTFAPTGWILLAFQPLHFLSFVLFVT
SAITYVKETSPLIVITSMVSLFQTMFEGVGVLVGSSIGGVLFKNYGGRKV
YLIYAFFALFWAMVLGVYIFIFKDKNKNTTKSEKNDESTTYENDTTC Run BLAST on NCBI transcript from alignment at scaffold_60:1634734..1636756+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071310 ID=TCONS_00071310|Name=TCONS_00071310|organism=Clytia hemisphaerica|type=transcript|length=2023bp|location=Sequence derived from alignment at scaffold_60:1634734..1636756+ (Clytia hemisphaerica)
GGGAGACCTGGCAGAAGAGATGCcgttgaaaaatttaaacgacGAAAACG
ATGAAGAGGGAGGGGAAATAAAGAAATACAAATGGTATAACATCAATTGG
AACACACTTCCGGCAAAAGCTGCCTTCTTCTTTGACACAGCACGAAGAGT
TGGGTCCTTACCAAGTCTTGTGTTGTTCTTGACTGGCATTGGTTTAGATA
AAGTGGAAGCTGGCCTTATTCTTGGATTCAGGTACAGTCTTTCTCTTGAT
TCTGAGCTAGCATACAAACGATGTTTTAATGTTCATCTAACATTCATAAC
AACTTGTATCCTAATATTGAAAGAATATCGGAATGGCGTTCTTGGATGTT
TTTGGTAATTCCTCCGAAACATTACAGCTATTCTTCATTCTCAGTGCTAC
AGCATATCGGAGTTTTGATCGTGAGAAAATGTTACCCAGACTTTTTCTCG
TTTTAAGCCCTTTCCACTTCAGAGTTCTtaatcaaaagctttttttatat
ccCACGTCAATTGTTTTTTCCTTTCAGGCTTCTTGGAATGCTCTTTGGAG
GACCATTTTGGGGAGTGATTGCAGACAAGTTTCATTGTCATCGTTTGATC
CTTATCATTAATTGTATTGGAATTATTTTGACAATGGGTTGTCAACCTTT
GTTAGCCATCAAATATGGTAACCCTGTCATCAACAAATGCCCTGAACCAA
CGTGGAGTCAATTTGTCAACAATCTCAATCAAACCAATAATTCCACTTTG
GACGGACAATCCATAAATCAAAAACAAGATATGTACGGGACTCCATTTTT
CGTCTTTTTCTTCACACAAATCTTAGCCGCGTTTTTCGAGGTCAGTGGAG
CATCCTTTATAGACGTAGCAACGATCAGAAAATCTCAACTCAGTAAACAC
CGAAAGATCGATTATGGTCGGCAACGATTCTGGGGTCCAATTGGAGCTAT
CTTCGGAGTTAACATGACAAATCTGATTATTGACTATTTCCCCAAAGTAA
GCATCACTTGCTATTCAGGGCTGTTCGTTACGTACGTGCTGTTTACGATC
TTAATGACTGTTTGTTTACTCGTCTTGTATAACGGACTATCTTTCGAAGA
TGAGAACCATACGatgaacgaaaaagaaaaacaatgttttcgaaaaacat
ttcgTAGACATTTGATTCAGTTCGAAGTGATACTTGTTTATGGAATTGCG
TTTTTCGGTGGTGTTGTATATAGCTCAtacaaagttttaaattttctctA
CTTGAAGGAACTCTCCTCTCCCTCTCTCGTAAGAACACTTACAATATCAA
TCGCCggattttcagccatttttggaTTCTTCTTTTCAGGCAAAATCATT
CGGATTCTAGGTGGTCCGTTGATATCTCTGATGGTTGCcttaatattttt
tgttgtaCGTTACCTTGGATACACATTTGCACCAACTGGATGGATTCTAT
TAGCTTTTCAACCATTgcattttttaagttttgtgCTTTTTGTGACGTCA
GCTATTACTTATGTGAAAGAAACCAGTCCCTTAATTGTGATTACGAGCAT
GGTTTCCCTCTTCCAAACAATGTTCGAAGGAGTTGGAGTTTTGGTTGGGT
CAAGCATTGGAGGTGttcttttcaaaaactatggAGGACGGAAGGTGTAT
CTTATTTACGCATTTTTCGCCTTGTTTTGGGCTATGGTTCTGGGtgttta
tattttcatattcaAAGACAAGAATAAAAACACTACAAAATCGGAAAAGA
ATGATGAGAGTACAACATATGAAAATGACACAACGTGTTGATAGGGTCAA
GGAATTGATTTAGAACGCTATCCGAGTTTCTGGATGAAACAAGAGAACGC
GACTGCGCGTTTAACAGCAGTGACTCCAcctgtttggtttggtttggttC
TGGAGAATCATTGTACCAAGTGGTGGCTAGTGGTGCGAACTTTTTTTCGG
TTCTTTTGATGGTTTTATtgattttacaattttcttggAAACATATTTAA
ATCTGTGGGTATTTCTTCTGGCG Coding sequence (CDS) from alignment at scaffold_60:1634734..1636756+ >TCONS_00071310 ID=TCONS_00071310|Name=TCONS_00071310|organism=Clytia hemisphaerica|type=CDS|length=2988bp|location=Sequence derived from alignment at scaffold_60:1634734..1636756+ (Clytia hemisphaerica)
GGAGACCTGGCAGAAGAGATGCcgttgaaaaatttaaacgacGAAAACGA
TGAAGAGGGAGGGGAAATAAAGAAATACAAATGGTATAACATCAATTGGA
ACACACTTCCGGCAAAAGCTGCCTTCTTCTTTGACACAGCACGAAGAGTT
GGGTCCTTACCAAGTCTTGTGTTGTTCTTGACTGGCATTGGTTTAGATAA
AGTGGAAGCTGGCCTTATTCTTGGATTCAGGCTTCTTGGAATGCTCTTTG
GAGGACCATTTTGGGGAGTGATTGCAGACAAGTTTCATTGTCATCGTTTG
ATCCTTATCATTAATTGTATTGGAATTATTTTGACAATGGGTTGTCAACC
TTTGTTAGCCATCAAATATGGTAACCCTGTCATCAACAAATGCCCTGAAC
CAACGTGGAGTCAATTTGTCAACAATCTCAATCAAACCAATAATTCCACT
TTGGACGGACAATCCATAAATCAAAAACAAGATATGTACGGGACTCCATT
TTTCGTCTTTTTCTTCACACAAATCTTAGCCGCGTTTTTCGAGGTCAGTG
GAGCATCCTTTATAGACGTAGCAACGATCAGAAAATCTCAACTCAGTAAA
CACCGAAAGATCGATTATGGTCGGCAACGATTCTGGGGTCCAATTGGAGC
TATCTTCGGAGTTAACATGACAAATCTGATTATTGACTATTTCCCCAAAG
TAAGCATCACTTGCTATTCAGGGCTGTTCGTTACGTACGTGCTGTTTACG
ATCTTAATGACTGTTTGTTTACTCGTCTTGTATAACGGACTATCTTTCGA
AGATGAGAACCATACGatgaacgaaaaagaaaaacaatgttttcgaaaaa
catttcgTAGACATTTGATTCAGTTCGAAGTGATACTTGTTTATGGAATT
GCGTTTTTCGGTGGTGTTGTATATAGCTCAtacaaagttttaaattttct
ctACTTGAAGGAACTCTCCTCTCCCTCTCTCGTAAGAACACTTACAATAT
CAATCGCCggattttcagccatttttggaTTCTTCTTTTCAGGCAAAATC
ATTCGGATTCTAGGTGGTCCGTTGATATCTCTGATGGTTGCcttaatatt
ttttgttgtaCGTTACCTTGGATACACATTTGCACCAACTGGATGGATTC
TATTAGCTTTTCAACCATTgcattttttaagttttgtgCTTTTTGTGACG
TCAGCTATTACTTATGTGAAAGAAACCAGTCCCTTAATTGTGATTACGAG
CATGGTTTCCCTCTTCCAAACAATGTTCGAAGGAGTTGGAGTTTTGGTTG
GGTCAAGCATTGGAGGTGttcttttcaaaaactatggAGGACGGAAGGTG
TATCTTATTTACGCATTTTTCGCCTTGTTTTGGGCTATGGTTCTGGGtgt
ttatattttcatattcaAAGACAAGAATAAAAACACTACAAAATCGGAAA
AGAATGATGAGAGTACAACATATGAAAATGACACAACGTGTTGAGGAGAC
CTGGCAGAAGAGATGCcgttgaaaaatttaaacgacGAAAACGATGAAGA
GGGAGGGGAAATAAAGAAATACAAATGGTATAACATCAATTGGAACACAC
TTCCGGCAAAAGCTGCCTTCTTCTTTGACACAGCACGAAGAGTTGGGTCC
TTACCAAGTCTTGTGTTGTTCTTGACTGGCATTGGTTTAGATAAAGTGGA
AGCTGGCCTTATTCTTGGATTCAGGCTTCTTGGAATGCTCTTTGGAGGAC
CATTTTGGGGAGTGATTGCAGACAAGTTTCATTGTCATCGTTTGATCCTT
ATCATTAATTGTATTGGAATTATTTTGACAATGGGTTGTCAACCTTTGTT
AGCCATCAAATATGGTAACCCTGTCATCAACAAATGCCCTGAACCAACGT
GGAGTCAATTTGTCAACAATCTCAATCAAACCAATAATTCCACTTTGGAC
GGACAATCCATAAATCAAAAACAAGATATGTACGGGACTCCATTTTTCGT
CTTTTTCTTCACACAAATCTTAGCCGCGTTTTTCGAGGTCAGTGGAGCAT
CCTTTATAGACGTAGCAACGATCAGAAAATCTCAACTCAGTAAACACCGA
AAGATCGATTATGGTCGGCAACGATTCTGGGGTCCAATTGGAGCTATCTT
CGGAGTTAACATGACAAATCTGATTATTGACTATTTCCCCAAAGTAAGCA
TCACTTGCTATTCAGGGCTGTTCGTTACGTACGTGCTGTTTACGATCTTA
ATGACTGTTTGTTTACTCGTCTTGTATAACGGACTATCTTTCGAAGATGA
GAACCATACGatgaacgaaaaagaaaaacaatgttttcgaaaaacatttc
gTAGACATTTGATTCAGTTCGAAGTGATACTTGTTTATGGAATTGCGTTT
TTCGGTGGTGTTGTATATAGCTCAtacaaagttttaaattttctctACTT
GAAGGAACTCTCCTCTCCCTCTCTCGTAAGAACACTTACAATATCAATCG
CCggattttcagccatttttggaTTCTTCTTTTCAGGCAAAATCATTCGG
ATTCTAGGTGGTCCGTTGATATCTCTGATGGTTGCcttaatattttttgt
tgtaCGTTACCTTGGATACACATTTGCACCAACTGGATGGATTCTATTAG
CTTTTCAACCATTgcattttttaagttttgtgCTTTTTGTGACGTCAGCT
ATTACTTATGTGAAAGAAACCAGTCCCTTAATTGTGATTACGAGCATGGT
TTCCCTCTTCCAAACAATGTTCGAAGGAGTTGGAGTTTTGGTTGGGTCAA
GCATTGGAGGTGttcttttcaaaaactatggAGGACGGAAGGTGTATCTT
ATTTACGCATTTTTCGCCTTGTTTTGGGCTATGGTTCTGGGtgtttatat
tttcatattcaAAGACAAGAATAAAAACACTACAAAATCGGAAAAGAATG
ATGAGAGTACAACATATGAAAATGACACAACGTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071310-exon-scaffold_60-1491911889:1634734..1634964 | TCONS_00071310-exon-scaffold_60-1491911889:1634734..1634964 | Clytia hemisphaerica | exon |
| TCONS_00071310-exon-scaffold_60-1510915933:1634734..1634964 | TCONS_00071310-exon-scaffold_60-1510915933:1634734..1634964 | Clytia hemisphaerica | exon |
| TCONS_00071310-exon-scaffold_60-1575043694:1634734..1634964 | TCONS_00071310-exon-scaffold_60-1575043694:1634734..1634964 | Clytia hemisphaerica | exon |
| TCONS_00071310-exon-scaffold_60-1491911889:1635261..1636756 | TCONS_00071310-exon-scaffold_60-1491911889:1635261..1636756 | Clytia hemisphaerica | exon |
| TCONS_00071310-exon-scaffold_60-1510915933:1635261..1636756 | TCONS_00071310-exon-scaffold_60-1510915933:1635261..1636756 | Clytia hemisphaerica | exon |
| TCONS_00071310-exon-scaffold_60-1575043694:1635261..1636756 | TCONS_00071310-exon-scaffold_60-1575043694:1635261..1636756 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1634734..1636756 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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