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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071309 ID=TCONS_00071309|Name=TCONS_00071309|organism=Clytia hemisphaerica|type=transcript|length=1648bp
ATACTGAAAAAgcacattcttataaaaaaaattgtactgtTTTCTGAATA
TGACATTTTATGTATGTGTAATCTGATGatattgaaaaaatgattttcat
gttttgacGGCTGTGAAAGTCTCGTGAGCAAGTTTGGTTGCAATTCACTT
AGATGTAGAGAGTAACGAgttggatgtcaaaaagtgggTCACGAAATAAA
TTTAACAAAACTTTACTGAGAAAGATGGACATTCGATGGTTCTTGTTGGC
TTTGCTCAGTGGAAGCTTGGTATTATCAGTTCCCGTGAGACCAGAAAAAG
AACTAAACAACCGCCCTATAATCGCAATCTTAGCACAAGACGCACCGCCC
TACTACAATCAATCATATATCGCCGCCTCTTACGTTAAATACTTAGAATC
CAGCGGCGCCCGTGTCGTTCCAGTCCCTTCCCATTATCCTGAAGAAAAAG
TGGAAGAAATCTTCAATGGTGTAAATGGGGTCTTATTTCCAGGTGGAGGA
ATCAAGTGGAGTGTATCTGGGTATTATAAGCATGCTCAATATTTCTTCCA
CAAAGCTATAGAAGCTTACGATAAAGGAGATTATTTTCCAATATGGGGCA
CATGTCTTGGGTTTCAAACACTCCACGTGGTCGCTGCTGGAGACAGACCT
TCCATTCTATCTAAGTTCTCTGCATCAGACATCAGCCTTCCTTTAGAATT
CACCAACGCTACTCGAAATAGCCGGATGTTCACTGGCATTTCAGAGGAGA
TGAGCAAAGCATTTCAGCTGGAGAATATCACGTATAACCATCATCATTAT
GGTGTCAGTACTGCAACTTACCAACAAGAAAACTCACTGAAAACTTTCTT
TAATGTTTTATCACTTAATAAAGGATTGGAAGGCAAAACATTCATTTCAA
CTGTCGAAGCATACAACTATCCAATCTATGGTACACAGTGGCATCCGGAG
AAGAACAATTTTGAACACAACACAGACGAGCATATCCCAAACACTTTCAC
TGCTATCAAAGCATCCCAATACACCGCCAACTTTTTTGTCAACGAGGCCA
GGAAAAGCCAACACAAATTCGCAAATGCTAAAATCGAGCGTGACTATTTG
ATTTATAATTACAATCCTGTGTTTACTGGTAAAGGAGAAGTTCTTCCTCA
TTTTGAACAAGCTTACTTCTTTAACGATAGAGATTAATTTGTAAAGGTGG
AGAACTATAGTCACTGTCATTGAAAACAGCAAAAACGGATGATCTACTTT
TCAAAGGAACCattgaatgataaatttatttttggcaTCAGagctgaaaa
ttatttttgtgtcAATCATATCATAACtcagtttctcttttttttctttt
tttttcatctttgtctTTTAGTATGTTTTGGAAAAttcttcattgaaaaa
tataggtgctcgaaaatatcttttcaacgatacGTTTTTCTATCGAAATT
GAGGCATTATTTGGTAAACAGAAACCAATATAAGAATTAATACGTACAAA
ACGAATGGTCTCTAGAACTACTCCCAGCATATTAAAATtgcatttgaatt
tgaatttttaataattttgtatttttagtagctagtgtaaattatttttg
taataaTGCATTTGAAATATAATGGAACAAGCATCTTTATAAAACCCG Run BLAST on NCBI protein sequence of TCONS_00071309-protein >TCONS_00071309-protein ID=TCONS_00071309-protein|Name=TCONS_00071309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MSKSGSRNKFNKTLLRKMDIRWFLLALLSGSLVLSVPVRPEKELNNRPII
AILAQDAPPYYNQSYIAASYVKYLESSGARVVPVPSHYPEEKVEEIFNGV
NGVLFPGGGIKWSVSGYYKHAQYFFHKAIEAYDKGDYFPIWGTCLGFQTL
HVVAAGDRPSILSKFSASDISLPLEFTNATRNSRMFTGISEEMSKAFQLE
NITYNHHHYGVSTATYQQENSLKTFFNVLSLNKGLEGKTFISTVEAYNYP
IYGTQWHPEKNNFEHNTDEHIPNTFTAIKASQYTANFFVNEARKSQHKFA
NAKIERDYLIYNYNPVFTGKGEVLPHFEQAYFFNDRD Run BLAST on NCBI transcript from alignment at scaffold_60:1621858..1625217+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071309 ID=TCONS_00071309|Name=TCONS_00071309|organism=Clytia hemisphaerica|type=transcript|length=3360bp|location=Sequence derived from alignment at scaffold_60:1621858..1625217+ (Clytia hemisphaerica)
ATACTGAAAAAgcacattcttataaaaaaaattgtactgtTTTCTGAATA
TGACATTTTATGTATGTGTAATCTGATGatattgaaaaaatgattttcat
gttttgacGGCTGTGAAAGTCTCGTGAGCAAGTTTGGTTGCAATTCACTT
AGATGTAGAGAGTAACGAgttggatgtcaaaaagtgggTCACGAAATAAA
TTTAACAAAACTTTGTAAGTATCAGTCcatatacactcttttttatataa
gaaccagtgaTTGTTTTATGAGGCTATTCGTTATTCGTTAtagaaaaagc
gtgtacttaGTTAAAGTCTGATTTACAGACCTAGATCCTCTGTTTAGAAA
CCTTTTCGTGAGAGGTTGATCAAAAGCCCTCCTCAGTGACAATACCAAGT
CTTGAGAAAAAAGAACTATAATTTCAAAACTTGAGCGCTGCCTGAAAAAC
TGCGCGTCCTGTGTACTAATCCACTACACTCAATACGTTTCAGggattga
aaatttatttttactaACACAATTCTTATCTGATAATACGTTAACCTTTT
TCAGACTGAGAAAGATGGACATTCGATGGTTCTTGTTGGCTTTGCTCAGT
GGAAGCTTGGTATTATCAGTTCCCGTGAGACCAGAAAAAGAACTAAACAA
CCGCCCTATAATCGCAATCTTAGCACAAGACGCACCGCCCTACTACAATC
AATCATATATCGCCGCCTCTTACGTTAAATACTTAGAATCCAGCGGCGCC
CGTGTCGTTCCAGTCCCTTCCCATTATCCTGAAGAAAAAGTGGAAGAAAT
CTTCAATGGTGTAAATGGGGTCTTATTTCCAGGTGGAGGAATCAAGTGGA
GTGTATCTGGGTATTATAAGCATGCTCAATATTTCTTCCACAAAGCTATA
GAAGCTTACGATAAAGGAGATTATTTTCCAATATGGGGCACATGTCTTGG
GTTTCAAACACTCCACGTGGTCGCTGCTGGAGACAGACCTTCCATTCTAT
CTAAGTTCTCTGCATCAGACATCAGCCTTCCTTTAGAATTCACCAACGCT
ACTCGAAATAGCCGGATGTTCACTGGCATTTCAGAGGAGATGAGCAAAGC
ATTTCAGCTGGAGAATATCACGTATAACCATCATCATTATGGTGTCAGTA
CTGCAACTTACCAACAAGAAAACTCACTGAAAACTTTCTTTAATGTTTTA
TCACTTAATAAAGGATTGGAAGGCAAAACATTCATTTCAACTGTCGAAGG
TGAACTATTTTCTTAATCTTAGTATTCAAATAAATGGAGGGGTgtggaaa
atgttcaaaattttgaataaaccGGGGGGGGCTGATTGCCGAGGGGTTGA
TAATTGTGCTTCTgataacccaaaaataaggtaaaaaaggCTAAGATCAG
GCTATCTCTCtgacaactgaaaatattcttaaaaattaataaacgaggga
gggggtcctaataaggtccgggggctggaaaattttcgaaaaattaacaa
gcgtgGCGgggtaccgtgaaaagcacaggtcgaaatcatatatcgacgct
gtgccgacgaatcgagattctattcagcgcgcaatcaacgaagacaaaag
taaccatgatgaccatccaagatcttggatgaagttcaaagttgatcatt
tttattcccgtcgttgaaaacacaactaaaaaatatcatcaatgcttttt
tcaaaaagagtcagtgatagggaatcataacataaagtctgtctattact
tcgattcaattaaagtgacatttccataattaatagtttagtaattactg
ttatacattttgggatcatgtaaaagatttctttcgaaagaaactcactt
caattacacttggaggtttctggggaattcgtaaatattaaactgcatac
tgatacagtctgctagacattaataaggtaatatttgctcttNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtacagtgattagattgaca
catgcgcgataaaatttatattattggtcttcagaggttaatatattctt
tgaaaacttaacctctgatactcagggtagcgGCGGGGgcatttatttgg
aacctaagagtacatgcTCTTTTTTGTGAGAAACAATTTTTGGGGAATTT
ACTGACCCCAAATGAGGTATGAACTTTTTCAGCTATTAGggttaaaatgt
tttaaactcaGAAGTTAAAGTGTCTTTCCTTGTAGGGATAGAGTTTCGTA
TATGTTTTCGATGTAGATGTAATTCAGGGTATTTTTCTCACCGGGCGTAT
CTTTGTTTGGTTGTTCTAGTGGGTAGGGGGTCCTGAAATTGTTCTGAGAT
GCGATGTGTATCGGGTTGAAAAGCTTTTTCGTCATTTGGTATTCATTCCT
AGTATGGGGCCATCCATGGGGGTAGCAAAAATGTACGTATAATATCTGAA
TGTTGTCATTTCTCTTGTTCTCTACGCGCGTACAAGGTTTGAAGGGGTAT
CAAATAATTTGGGAATATTTTTCGTACCTTCTATAAATGGATGACCCCTA
TGTCCAACATCTATTTTTCTAGTGTGTAATTGTTAATcatattttggtca
ttttatTCTCCATTCTATCAGCATACAACTATCCAATCTATGGTACACAG
TGGCATCCGGAGAAGAACAATTTTGAACACAACACAGACGAGCATATCCC
AAACACTTTCACTGCTATCAAAGCATCCCAATACACCGCCAACTTTTTTG
TCAACGAGGCCAGGAAAAGCCAACACAAATTCGCAAATGCTAAAATCGAG
CGTGACTATTTGATTTATAATTACAATCCTGTGTTTACTGGTAAAGGAGA
AGTTCTTCCTCATTTTGAACAAGCTTACTTCTTTAACGATAGAGATTAAT
TTGTAAAGGTGGAGAACTATAGTCACTGTCATTGAAAACAGCAAAAACGG
ATGATCTACTTTTCAAAGGAACCattgaatgataaatttatttttggcaT
CAGagctgaaaattatttttgtgtcAATCATATCATAACtcagtttctct
tttttttctttttttttcatctttgtctTTTAGTATGTTTTGGAAAAttc
ttcattgaaaaatataggtgctcgaaaatatcttttcaacgatacGTTTT
TCTATCGAAATTGAGGCATTATTTGGTAAACAGAAACCAATATAAGAATT
AATACGTACAAAACGAATGGTCTCTAGAACTACTCCCAGCATATTAAAAT
tgcatttgaatttgaatttttaataattttgtatttttagtagctagtgt
aaattatttttgtaataaTGCATTTGAAATATAATGGAACAAGCATCTTT
ATAAAACCCG Coding sequence (CDS) from alignment at scaffold_60:1621858..1625217+ >TCONS_00071309 ID=TCONS_00071309|Name=TCONS_00071309|organism=Clytia hemisphaerica|type=CDS|length=3042bp|location=Sequence derived from alignment at scaffold_60:1621858..1625217+ (Clytia hemisphaerica)
atgtcaaaaagtgggTCACGAAATAAATTTAACAAAACTTTACTGAGAAA
GATGGACATTCGATGGTTCTTGTTGGCTTTGCTCAGTGGAAGCTTGGTAT
TATCAGTTCCCGTGAGACCAGAAAAAGAACTAAACAACCGCCCTATAATC
GCAATCTTAGCACAAGACGCACCGCCCTACTACAATCAATCATATATCGC
CGCCTCTTACGTTAAATACTTAGAATCCAGCGGCGCCCGTGTCGTTCCAG
TCCCTTCCCATTATCCTGAAGAAAAAGTGGAAGAAATCTTCAATGGTGTA
AATGGGGTCTTATTTCCAGGTGGAGGAATCAAGTGGAGTGTATCTGGGTA
TTATAAGCATGCTCAATATTTCTTCCACAAAGCTATAGAAGCTTACGATA
AAGGAGATTATTTTCCAATATGGGGCACATGTCTTGGGTTTCAAACACTC
CACGTGGTCGCTGCTGGAGACAGACCTTCCATTCTATCTAAGTTCTCTGC
ATCAGACATCAGCCTTCCTTTAGAATTCACCAACGCTACTCGAAATAGCC
GGATGTTCACTGGCATTTCAGAGGAGATGAGCAAAGCATTTCAGCTGGAG
AATATCACGTATAACCATCATCATTATGGTGTCAGTACTGCAACTTACCA
ACAAGAAAACTCACTGAAAACTTTCTTTAATGTTTTATCACTTAATAAAG
GATTGGAAGGCAAAACATTCATTTCAACTGTCGAAGCATACAACTATCCA
ATCTATGGTACACAGTGGCATCCGGAGAAGAACAATTTTGAACACAACAC
AGACGAGCATATCCCAAACACTTTCACTGCTATCAAAGCATCCCAATACA
CCGCCAACTTTTTTGTCAACGAGGCCAGGAAAAGCCAACACAAATTCGCA
AATGCTAAAATCGAGCGTGACTATTTGATTTATAATTACAATCCTGTGTT
TACTGGTAAAGGAGAAGTTCTTCCTCATTTTGAACAAGCTTACTTCTTTA
ACGATAGAGATTAAatgtcaaaaagtgggTCACGAAATAAATTTAACAAA
ACTTTACTGAGAAAGATGGACATTCGATGGTTCTTGTTGGCTTTGCTCAG
TGGAAGCTTGGTATTATCAGTTCCCGTGAGACCAGAAAAAGAACTAAACA
ACCGCCCTATAATCGCAATCTTAGCACAAGACGCACCGCCCTACTACAAT
CAATCATATATCGCCGCCTCTTACGTTAAATACTTAGAATCCAGCGGCGC
CCGTGTCGTTCCAGTCCCTTCCCATTATCCTGAAGAAAAAGTGGAAGAAA
TCTTCAATGGTGTAAATGGGGTCTTATTTCCAGGTGGAGGAATCAAGTGG
AGTGTATCTGGGTATTATAAGCATGCTCAATATTTCTTCCACAAAGCTAT
AGAAGCTTACGATAAAGGAGATTATTTTCCAATATGGGGCACATGTCTTG
GGTTTCAAACACTCCACGTGGTCGCTGCTGGAGACAGACCTTCCATTCTA
TCTAAGTTCTCTGCATCAGACATCAGCCTTCCTTTAGAATTCACCAACGC
TACTCGAAATAGCCGGATGTTCACTGGCATTTCAGAGGAGATGAGCAAAG
CATTTCAGCTGGAGAATATCACGTATAACCATCATCATTATGGTGTCAGT
ACTGCAACTTACCAACAAGAAAACTCACTGAAAACTTTCTTTAATGTTTT
ATCACTTAATAAAGGATTGGAAGGCAAAACATTCATTTCAACTGTCGAAG
CATACAACTATCCAATCTATGGTACACAGTGGCATCCGGAGAAGAACAAT
TTTGAACACAACACAGACGAGCATATCCCAAACACTTTCACTGCTATCAA
AGCATCCCAATACACCGCCAACTTTTTTGTCAACGAGGCCAGGAAAAGCC
AACACAAATTCGCAAATGCTAAAATCGAGCGTGACTATTTGATTTATAAT
TACAATCCTGTGTTTACTGGTAAAGGAGAAGTTCTTCCTCATTTTGAACA
AGCTTACTTCTTTAACGATAGAGATTAAatgtcaaaaagtgggTCACGAA
ATAAATTTAACAAAACTTTACTGAGAAAGATGGACATTCGATGGTTCTTG
TTGGCTTTGCTCAGTGGAAGCTTGGTATTATCAGTTCCCGTGAGACCAGA
AAAAGAACTAAACAACCGCCCTATAATCGCAATCTTAGCACAAGACGCAC
CGCCCTACTACAATCAATCATATATCGCCGCCTCTTACGTTAAATACTTA
GAATCCAGCGGCGCCCGTGTCGTTCCAGTCCCTTCCCATTATCCTGAAGA
AAAAGTGGAAGAAATCTTCAATGGTGTAAATGGGGTCTTATTTCCAGGTG
GAGGAATCAAGTGGAGTGTATCTGGGTATTATAAGCATGCTCAATATTTC
TTCCACAAAGCTATAGAAGCTTACGATAAAGGAGATTATTTTCCAATATG
GGGCACATGTCTTGGGTTTCAAACACTCCACGTGGTCGCTGCTGGAGACA
GACCTTCCATTCTATCTAAGTTCTCTGCATCAGACATCAGCCTTCCTTTA
GAATTCACCAACGCTACTCGAAATAGCCGGATGTTCACTGGCATTTCAGA
GGAGATGAGCAAAGCATTTCAGCTGGAGAATATCACGTATAACCATCATC
ATTATGGTGTCAGTACTGCAACTTACCAACAAGAAAACTCACTGAAAACT
TTCTTTAATGTTTTATCACTTAATAAAGGATTGGAAGGCAAAACATTCAT
TTCAACTGTCGAAGCATACAACTATCCAATCTATGGTACACAGTGGCATC
CGGAGAAGAACAATTTTGAACACAACACAGACGAGCATATCCCAAACACT
TTCACTGCTATCAAAGCATCCCAATACACCGCCAACTTTTTTGTCAACGA
GGCCAGGAAAAGCCAACACAAATTCGCAAATGCTAAAATCGAGCGTGACT
ATTTGATTTATAATTACAATCCTGTGTTTACTGGTAAAGGAGAAGTTCTT
CCTCATTTTGAACAAGCTTACTTCTTTAACGATAGAGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071309-exon-scaffold_60-1491911889:1621858..1622071 | TCONS_00071309-exon-scaffold_60-1491911889:1621858..1622071 | Clytia hemisphaerica | exon |
| TCONS_00071309-exon-scaffold_60-1510915933:1621858..1622071 | TCONS_00071309-exon-scaffold_60-1510915933:1621858..1622071 | Clytia hemisphaerica | exon |
| TCONS_00071309-exon-scaffold_60-1575043694:1621858..1622071 | TCONS_00071309-exon-scaffold_60-1575043694:1621858..1622071 | Clytia hemisphaerica | exon |
| TCONS_00071309-exon-scaffold_60-1491911889:1622412..1623106 | TCONS_00071309-exon-scaffold_60-1491911889:1622412..1623106 | Clytia hemisphaerica | exon |
| TCONS_00071309-exon-scaffold_60-1510915933:1622412..1623106 | TCONS_00071309-exon-scaffold_60-1510915933:1622412..1623106 | Clytia hemisphaerica | exon |
| TCONS_00071309-exon-scaffold_60-1575043694:1622412..1623106 | TCONS_00071309-exon-scaffold_60-1575043694:1622412..1623106 | Clytia hemisphaerica | exon |
| TCONS_00071309-exon-scaffold_60-1491911889:1624479..1625217 | TCONS_00071309-exon-scaffold_60-1491911889:1624479..1625217 | Clytia hemisphaerica | exon |
| TCONS_00071309-exon-scaffold_60-1510915933:1624479..1625217 | TCONS_00071309-exon-scaffold_60-1510915933:1624479..1625217 | Clytia hemisphaerica | exon |
| TCONS_00071309-exon-scaffold_60-1575043694:1624479..1625217 | TCONS_00071309-exon-scaffold_60-1575043694:1624479..1625217 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1621858..1625217 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
| GO:0003824 | catalytic activity |
| GO:0008242 | omega peptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006541 | glutamine metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006541 |
glutamine metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0016787 |
hydrolase activity |
| molecular_function |
GO:0008242 |
omega peptidase activity |
Blast
BLAST of TCONS_00071309 vs. Swiss-Prot (Human)
Match: GGH (Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2) HSP 1 Score: 246.899 bits (629), Expect = 3.350e-76 Identity = 128/301 (42.52%), Postives = 181/301 (60.13%), Query Frame = 3
Query: 288 RPEKELNNRPIIAILAQDAP----PYYNQSYIAASYVKYLESSGARVVPVPSHYPEEKVEEIFNGVNGVLFPGGGIKWSVSGYYKHAQYFFHKAIEAYDKGDYFPIWGTCLGFQTLHVVAAGDRPSILSKFSASDISLPLEFTNATRNSRMFTGISEEMSKAFQLENITYNHHHYGVSTATYQQENSLKTFFNVLSLNKGLEGKT-FISTVEAYNYPIYGTQWHPEKNNFEHNTDEHIPNTFTAIKASQYTANFFVNEARKSQHKFANAKIERDYLIYNYNPVFTGKGEVLPHFEQAYFFN 1175
RP + +PII IL Q Y + YIAASYVKYLES+GARVVPV E+ E +F +NG+LFPGG + S Y K A+ F++ +I+++D GDYFP+WGTCLGF+ L ++ +G+ +L+ D+++PL FT +SRMF E+ + +E +T N H + +S + LK FFNVL+ N +GK FIST+E Y YP+YG QWHPEK +E + I + A+K + Y A FFVNEARK+ H F + E LIY ++P++TG + F+Q Y F+
Sbjct: 25 RPHGDTAKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGE--CLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNT--DGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGN---ISSFQQCYIFD 318
The following BLAST results are available for this feature:
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