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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071304 ID=TCONS_00071304|Name=TCONS_00071304|organism=Clytia hemisphaerica|type=transcript|length=527bp
CAGCAACAACACAAAATCTTCAATTCGACAATAAGCTAATCTACATTTTA
CAGTCTAGATTCCTccaaaatgagaattttttgcgTACTTCTTgcTGCAT
TCGCTTGCACTGTGTGGGCTGCACCAAGCCCAAAAGACAACGACGAGCTA
GCAGAAAAACTTTGCAAAGGACTATGtattcatttaaaaagaaattgtgg
TCAAATGCTTGGATGTGGTAACGCAAGATTTGACGTATCAAAACATTGCC
CTGAAACTTGCGCCGCCCCAgTCTCAAAAGACAACAACGCATTGGCAGAA
AAAGTTTGCAAAGGACAATGTattcatttgaaaagaaattgtggTCAAAT
GCTTGGATGTGGTAACGCAAGATTTGACGTATCAAAGCATTGCCCTGAAA
CTTGCGCCGCTCCAggtgaaattattttcaaaattaaaacattcttttca
aagaaaaaaaatcacaagagCATAAGCCTTGAATTAGACCACAAATTTAG
AACAATCTGAGCACCAGGTTATAGAAT Run BLAST on NCBI protein sequence of TCONS_00071304-protein >TCONS_00071304-protein ID=TCONS_00071304-protein|Name=TCONS_00071304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MRIFCVLLAAFACTVWAAPSPKDNDELAEKLCKGLCIHLKRNCGQMLGCG
NARFDVSKHCPETCAAPVSKDNNALAEKVCKGQCIHLKRNCGQMLGCGNA
RFDVSKHCPETCAAPGEIIFKIKTFFSKKKNHKSISLELDHKFRTI Run BLAST on NCBI transcript from alignment at scaffold_60:1262871..1264111+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071304 ID=TCONS_00071304|Name=TCONS_00071304|organism=Clytia hemisphaerica|type=transcript|length=1241bp|location=Sequence derived from alignment at scaffold_60:1262871..1264111+ (Clytia hemisphaerica)
CAGCAACAACACAAAATCTTCAATTCGACAATAAGCTAATCTACATTTTA
CAGTCTAGATTCCTccaaaatgagaattttttgcgTACTTCTTGTAAGTA
AAACTTTCTCTTTTACTTTGTGGCCGGTTAATGCATTATATATTCtactg
atttttttaatcaaatgtattctttatttttttaggcTGCATTCGCTTGC
ACTGTGTGGGCTGCACCAAGTAAGGCTTATGCTATAAAATTTCATACCCA
AATGCAAAAGCATgataacaaatgtttttttttgtacaaCAAAATGATCA
TAGTAACCCTGCTTATCAGAAAATACAAATTCTGAAAAGCCAAGTTTACA
TTTTTCTCCTGTTAATAAATACCCTCTTTTTCTCTATACCTTATATTTCC
TCTAGACTGAAGATAATATATTTCCTTGTTTTGAATTTCCAGGCCCAAAA
GACAACGACGAGCTAGCAGAAAAACTTTGCAAAGGACTATGtattcattt
aaaaagaaattgtggTCAAATGCTTGGATGTGGTAACGCAAGATTTGACG
TATCAAAACATTGCCCTGAAACTTGCGCCGCCCCAggtgaaattattttc
aaaattaaaaacgttcttttcaaggaaaaaaatcaCAAGAGCAGGAGCCT
TGAATCAGACCACAAATTTAACAATCTGAGCACCAGGTTATAGAATTATT
GCTAAAAAACTTATTTAAGCACTTACCCCTCGAGTAAAGAAAATCTCGAT
GAAAATGATAACTGGGGCTGAAAATTTGTTCTATCcatataaatttgaaa
ttggttacacaatattttatctttttctgaACGGCCCGCTCTAACTAATT
TAACAAAAGTCGTCCGGactaatatttttttaacttgacAAAATATGTGT
TAACCTCTTCAAAATATAGTGTACATGGTGTTTGAAACACACCATGTAAG
ATTAATATAAAAACTTCCTTCCTTCAAATTTTCAGTCTCAAAAGACAACA
ACGCATTGGCAGAAAAAGTTTGCAAAGGACAATGTattcatttgaaaaga
aattgtggTCAAATGCTTGGATGTGGTAACGCAAGATTTGACGTATCAAA
GCATTGCCCTGAAACTTGCGCCGCTCCAggtgaaattattttcaaaatta
aaacattcttttcaaagaaaaaaaatcacaagagCATAAGCCTTGAATTA
GACCACAAATTTAGAACAATCTGAGCACCAGGTTATAGAAT Coding sequence (CDS) from alignment at scaffold_60:1262871..1264111+ >TCONS_00071304 ID=TCONS_00071304|Name=TCONS_00071304|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_60:1262871..1264111+ (Clytia hemisphaerica)
atgagaattttttgcgTACTTCTTgcTGCATTCGCTTGCACTGTGTGGGC
TGCACCAAGCCCAAAAGACAACGACGAGCTAGCAGAAAAACTTTGCAAAG
GACTATGtattcatttaaaaagaaattgtggTCAAATGCTTGGATGTGGT
AACGCAAGATTTGACGTATCAAAACATTGCCCTGAAACTTGCGCCGCCCC
AgTCTCAAAAGACAACAACGCATTGGCAGAAAAAGTTTGCAAAGGACAAT
GTattcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTAACGCA
AGATTTGACGTATCAAAGCATTGCCCTGAAACTTGCGCCGCTCCAggtga
aattattttcaaaattaaaacattcttttcaaagaaaaaaaatcacaaga
gCATAAGCCTTGAATTAGACCACAAATTTAGAACAATCTGAatgagaatt
ttttgcgTACTTCTTgcTGCATTCGCTTGCACTGTGTGGGCTGCACCAAG
CCCAAAAGACAACGACGAGCTAGCAGAAAAACTTTGCAAAGGACTATGta
ttcatttaaaaagaaattgtggTCAAATGCTTGGATGTGGTAACGCAAGA
TTTGACGTATCAAAACATTGCCCTGAAACTTGCGCCGCCCCAgTCTCAAA
AGACAACAACGCATTGGCAGAAAAAGTTTGCAAAGGACAATGTattcatt
tgaaaagaaattgtggTCAAATGCTTGGATGTGGTAACGCAAGATTTGAC
GTATCAAAGCATTGCCCTGAAACTTGCGCCGCTCCAggtgaaattatttt
caaaattaaaacattcttttcaaagaaaaaaaatcacaagagCATAAGCC
TTGAATTAGACCACAAATTTAGAACAATCTGAatgagaattttttgcgTA
CTTCTTgcTGCATTCGCTTGCACTGTGTGGGCTGCACCAAGCCCAAAAGA
CAACGACGAGCTAGCAGAAAAACTTTGCAAAGGACTATGtattcatttaa
aaagaaattgtggTCAAATGCTTGGATGTGGTAACGCAAGATTTGACGTA
TCAAAACATTGCCCTGAAACTTGCGCCGCCCCAgTCTCAAAAGACAACAA
CGCATTGGCAGAAAAAGTTTGCAAAGGACAATGTattcatttgaaaagaa
attgtggTCAAATGCTTGGATGTGGTAACGCAAGATTTGACGTATCAAAG
CATTGCCCTGAAACTTGCGCCGCTCCAggtgaaattattttcaaaattaa
aacattcttttcaaagaaaaaaaatcacaagagCATAAGCCTTGAATTAG
ACCACAAATTTAGAACAATCTGAatgagaattttttgcgTACTTCTTgcT
GCATTCGCTTGCACTGTGTGGGCTGCACCAAGCCCAAAAGACAACGACGA
GCTAGCAGAAAAACTTTGCAAAGGACTATGtattcatttaaaaagaaatt
gtggTCAAATGCTTGGATGTGGTAACGCAAGATTTGACGTATCAAAACAT
TGCCCTGAAACTTGCGCCGCCCCAgTCTCAAAAGACAACAACGCATTGGC
AGAAAAAGTTTGCAAAGGACAATGTattcatttgaaaagaaattgtggTC
AAATGCTTGGATGTGGTAACGCAAGATTTGACGTATCAAAGCATTGCCCT
GAAACTTGCGCCGCTCCAggtgaaattattttcaaaattaaaacattctt
ttcaaagaaaaaaaatcacaagagCATAAGCCTTGAATTAGACCACAAAT
TTAGAACAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071304-exon-scaffold_60-1491911889:1262871..1262963 | TCONS_00071304-exon-scaffold_60-1491911889:1262871..1262963 | Clytia hemisphaerica | exon |
| TCONS_00071304-exon-scaffold_60-1510915933:1262871..1262963 | TCONS_00071304-exon-scaffold_60-1510915933:1262871..1262963 | Clytia hemisphaerica | exon |
| TCONS_00071304-exon-scaffold_60-1575043694:1262871..1262963 | TCONS_00071304-exon-scaffold_60-1575043694:1262871..1262963 | Clytia hemisphaerica | exon |
| TCONS_00071304-exon-scaffold_60-1491911889:1263056..1263089 | TCONS_00071304-exon-scaffold_60-1491911889:1263056..1263089 | Clytia hemisphaerica | exon |
| TCONS_00071304-exon-scaffold_60-1510915933:1263056..1263089 | TCONS_00071304-exon-scaffold_60-1510915933:1263056..1263089 | Clytia hemisphaerica | exon |
| TCONS_00071304-exon-scaffold_60-1575043694:1263056..1263089 | TCONS_00071304-exon-scaffold_60-1575043694:1263056..1263089 | Clytia hemisphaerica | exon |
| TCONS_00071304-exon-scaffold_60-1491911889:1263313..1263456 | TCONS_00071304-exon-scaffold_60-1491911889:1263313..1263456 | Clytia hemisphaerica | exon |
| TCONS_00071304-exon-scaffold_60-1510915933:1263313..1263456 | TCONS_00071304-exon-scaffold_60-1510915933:1263313..1263456 | Clytia hemisphaerica | exon |
| TCONS_00071304-exon-scaffold_60-1575043694:1263313..1263456 | TCONS_00071304-exon-scaffold_60-1575043694:1263313..1263456 | Clytia hemisphaerica | exon |
| TCONS_00071304-exon-scaffold_60-1491911889:1263856..1264111 | TCONS_00071304-exon-scaffold_60-1491911889:1263856..1264111 | Clytia hemisphaerica | exon |
| TCONS_00071304-exon-scaffold_60-1510915933:1263856..1264111 | TCONS_00071304-exon-scaffold_60-1510915933:1263856..1264111 | Clytia hemisphaerica | exon |
| TCONS_00071304-exon-scaffold_60-1575043694:1263856..1264111 | TCONS_00071304-exon-scaffold_60-1575043694:1263856..1264111 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1262871..1264111 + |
Blast
The following BLAST results are available for this feature:
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