TCONS_00071303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071303
Unique NameTCONS_00071303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071303 ID=TCONS_00071303|Name=TCONS_00071303|organism=Clytia hemisphaerica|type=transcript|length=524bp
TTAAGCGattcaatgaaaatttgttgTAGCACTTACTGGTGAAAAGGGTT
TGGGGACAAGTTATAATCATATAAAAGAGATGAAATGAAGgcTGCATTCG
CTTGCACTGTGTGGGCTGCACCAAGCCCAAAAGACAACGACGAGCTAGCA
GAAAAACTTTGCAAAGGACTATGtattcatttaaaaagaaattgtggTCA
AATGCTTGGATGTGGTAACGCAAGATTTGACGTATCAAAACATTGCCCTG
AAACTTGCGCCGCCCCAgTCTCAAAAGACAACAACGCATTGGCAGAAAAA
GTTTGCAAAGGACAATGTattcatttgaaaagaaattgtggTCAAATGCT
TGGATGTGGTAACGCAAGATTTGACGTATCAAAGCATTGCCCTGAAACTT
GCGCCGCTCCAggtgaaattattttcaaaattaaaacattcttttcaaag
aaaaaaaatcacaagagCATAAGCCTTGAATTAGACCACAAATTTAGAAC
AATCTGAGCACCAGGTTATAGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_60:1262778..1264111+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071303 ID=TCONS_00071303|Name=TCONS_00071303|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at scaffold_60:1262778..1264111+ (Clytia hemisphaerica)
TTAAGCGattcaatgaaaatttgttgTAGCACTTACTGGTGAAAAGGGTT
TGGGGACAAGTTATAATCATATAAAAGAGATGAAATGAAGGTACAGCAAC
AACACAAAATCTTCAATTCGACAATAAGCTAATCTACATTTTACAGTCTA
GATTCCTccaaaatgagaattttttgcgTACTTCTTGTAAGTAAAACTTT
CTCTTTTACTTTGTGGCCGGTTAATGCATTATATATTCtactgatttttt
taatcaaatgtattctttatttttttaggcTGCATTCGCTTGCACTGTGT
GGGCTGCACCAAGTAAGGCTTATGCTATAAAATTTCATACCCAAATGCAA
AAGCATgataacaaatgtttttttttgtacaaCAAAATGATCATAGTAAC
CCTGCTTATCAGAAAATACAAATTCTGAAAAGCCAAGTTTACATTTTTCT
CCTGTTAATAAATACCCTCTTTTTCTCTATACCTTATATTTCCTCTAGAC
TGAAGATAATATATTTCCTTGTTTTGAATTTCCAGGCCCAAAAGACAACG
ACGAGCTAGCAGAAAAACTTTGCAAAGGACTATGtattcatttaaaaaga
aattgtggTCAAATGCTTGGATGTGGTAACGCAAGATTTGACGTATCAAA
ACATTGCCCTGAAACTTGCGCCGCCCCAggtgaaattattttcaaaatta
aaaacgttcttttcaaggaaaaaaatcaCAAGAGCAGGAGCCTTGAATCA
GACCACAAATTTAACAATCTGAGCACCAGGTTATAGAATTATTGCTAAAA
AACTTATTTAAGCACTTACCCCTCGAGTAAAGAAAATCTCGATGAAAATG
ATAACTGGGGCTGAAAATTTGTTCTATCcatataaatttgaaattggtta
cacaatattttatctttttctgaACGGCCCGCTCTAACTAATTTAACAAA
AGTCGTCCGGactaatatttttttaacttgacAAAATATGTGTTAACCTC
TTCAAAATATAGTGTACATGGTGTTTGAAACACACCATGTAAGATTAATA
TAAAAACTTCCTTCCTTCAAATTTTCAGTCTCAAAAGACAACAACGCATT
GGCAGAAAAAGTTTGCAAAGGACAATGTattcatttgaaaagaaattgtg
gTCAAATGCTTGGATGTGGTAACGCAAGATTTGACGTATCAAAGCATTGC
CCTGAAACTTGCGCCGCTCCAggtgaaattattttcaaaattaaaacatt
cttttcaaagaaaaaaaatcacaagagCATAAGCCTTGAATTAGACCACA
AATTTAGAACAATCTGAGCACCAGGTTATAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044310XLOC_044310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071303-exon-scaffold_60-1491911889:1262778..1262867TCONS_00071303-exon-scaffold_60-1491911889:1262778..1262867Clytia hemisphaericaexon
TCONS_00071303-exon-scaffold_60-1510915933:1262778..1262867TCONS_00071303-exon-scaffold_60-1510915933:1262778..1262867Clytia hemisphaericaexon
TCONS_00071303-exon-scaffold_60-1575043694:1262778..1262867TCONS_00071303-exon-scaffold_60-1575043694:1262778..1262867Clytia hemisphaericaexon
TCONS_00071303-exon-scaffold_60-1491911889:1263056..1263089TCONS_00071303-exon-scaffold_60-1491911889:1263056..1263089Clytia hemisphaericaexon
TCONS_00071303-exon-scaffold_60-1510915933:1263056..1263089TCONS_00071303-exon-scaffold_60-1510915933:1263056..1263089Clytia hemisphaericaexon
TCONS_00071303-exon-scaffold_60-1575043694:1263056..1263089TCONS_00071303-exon-scaffold_60-1575043694:1263056..1263089Clytia hemisphaericaexon
TCONS_00071303-exon-scaffold_60-1491911889:1263313..1263456TCONS_00071303-exon-scaffold_60-1491911889:1263313..1263456Clytia hemisphaericaexon
TCONS_00071303-exon-scaffold_60-1510915933:1263313..1263456TCONS_00071303-exon-scaffold_60-1510915933:1263313..1263456Clytia hemisphaericaexon
TCONS_00071303-exon-scaffold_60-1575043694:1263313..1263456TCONS_00071303-exon-scaffold_60-1575043694:1263313..1263456Clytia hemisphaericaexon
TCONS_00071303-exon-scaffold_60-1491911889:1263856..1264111TCONS_00071303-exon-scaffold_60-1491911889:1263856..1264111Clytia hemisphaericaexon
TCONS_00071303-exon-scaffold_60-1510915933:1263856..1264111TCONS_00071303-exon-scaffold_60-1510915933:1263856..1264111Clytia hemisphaericaexon
TCONS_00071303-exon-scaffold_60-1575043694:1263856..1264111TCONS_00071303-exon-scaffold_60-1575043694:1263856..1264111Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1262778..1264111 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.14771	0	0.228367	0	1.50001	0.813362	0	1.39104	3.96977	1.3812	9.80655	11.2177	7.07756	21.3612	0.871558	4.71621	20.6384	18.5599	15.4373	18.3522	6.74706	8.77648	0.00373493	92.806	0	0.164816	0.240106	0.127361
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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