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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071300 ID=TCONS_00071300|Name=TCONS_00071300|organism=Clytia hemisphaerica|type=transcript|length=147bp AGACCCGAGAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGAC AATGTattcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTGAC GCAAGATTTGACGTATCAAAACATTGCCCTGAAACTTGCACTGCCAC Run BLAST on NCBI transcript from alignment at scaffold_60:1241616..1255100+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071300 ID=TCONS_00071300|Name=TCONS_00071300|organism=Clytia hemisphaerica|type=transcript|length=13485bp|location=Sequence derived from alignment at scaffold_60:1241616..1255100+ (Clytia hemisphaerica) AGACCCGAGAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGAC
AATGTattcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTGAC
GCAAGATTTGACGTATCAAAACATTGCCCTGAAACTTGCGCTGCCACAGC
AGGTGAGTATTCAATTTTGATAAACAgcgattagtatatgtaatcacatg
ataacgagtgcaattcgaatataattgcaccagtgatttttttgttatta
atttttcgagtccgaaaggacaaggaaaattcgaaacaaaaaaatcacga
gtgcaattttcgaattgtacaaATTGTACAAACAATTGTAAAGAAGTTTA
ATGCAAAGATTGTCCTTACATTGTAGACCAAACAAAAGACAACAATGAAC
tagcagaaaaagtttgcaAAGGACAATGTattcatttgaaaagaaattgt
ggTCAAATGCTTGGATGTGGTAACGCAAAATTTGACGTATCAAAACATTG
CCCTGAAACTTGCACTGCCACAGCTGGTGagtatttcatttttgaaaaag
gcgaaTCTCATGAGCATCGACAACTTATACTAAAGTTATCGAAGAATTGT
AAAGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACCCAACAAAAGA
CAACAATGAACTAGCAAACAAAGTTTGCAAAGGACTATGTATTCATTTGA
AAAGACATTGTGGTCAAATGCTTGGATGTGGTGACGCAAGATTTGACGTA
TCAAAACATTGCCCTGAAACTTGCGCTGCCACGGCTGGTGagtatttcat
ttttgaaaaaggcaaATCTCATGAGCATCGACAACTTATACTAAAGTTAT
CAAAGAATTGTAAAGGAGTTTAATGCAAAGATTTTCCTTACATTGTAGAC
CCAACAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGACAATG
TattcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTGATGCAA
GATTTGACGTATCAAAACATTGCCCTGAAACTTGCACTGCCACGACTGGT
GggtatttaattttgaaaaacagcGACTTACGTCACAATCATAAACAATT
TATATTAAAATTATCAAAGAATTTTAATGAAGTTTAATGCAGAAATTTTC
CTTACATTGTAGACCTGACAAAAGACAACAATGAACtagcagaaaaagtt
tgcaAAGGACAATGTATTCATTTGAAAAGACATTGTGGTCAACTGCTTGG
ATGTGGTTATGCAAGATTTGACGTATCAAAACATTGCCCTGAAACTTGCG
CTGCCACGGCTGGTGAGTATTATATTTTCGAAAAAGGCGACTCTCATGAG
CATCGACGACTTATACTAAAGTTATCGAAGAATTGTAAAGAAGTTTAATG
GAAAGATTGTCCTTACATTGTAGACCCAACAAAAGACAACAATGAACtag
cagaaaaagtttgcaAAGGACAATGTattcatttgaaaagaaattgtggT
CAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGACAAT
GTattcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTAACGCA
AGATTTGACGTATCAAAACATTGCCCTGAAACTTGCGCTGTCACGGCCAG
TGAGTATTTCACTTTTGAAAAAGGCAAATCTCATGAGCATCGACAACTTA
taccaaaattatcaaagaaTTGTAATGAAGTTTAATGCAAAGATTTTCCT
TACATTGTAGACCCGACAAAAGACAACAATGAACtagcagaaaaagtttg
caAAGTACTATGTATTCATTTGAAAAGACATTGTGGTCAAATGCCTAGAT
GTGGTGACGCAAGATTTGACGTATCAAAACATTGCCCTGAAACTTGCAAA
GCCACAGTTGGTGAGTATTTCATTTTCGCAAAAGGCAAATCTTATGAGCA
TCGACTACTTATACTAAAATTATCGAAGAATTGTAATGAAGTTTAATGCA
AAGACTTTCCTTAAAATGTAGACCCAACAAAAGACAACAATGAACtagca
gaaaaagtttgcaAAGGACAATGTattcatttgaaaagaaattgtggTCA
AATGCTTGGATGTGGTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGTAGACCCAACAA
AAGACAACAATGAACtagcagaaaaagtttgcaAAGGACAATGTattcat
ttgaaaagaaattgtggTCAAATGCTTGGATGTGGTTATGCAAAATTTGA
CGTATCAAAACTTTGCCCTGAAACTTGCGCTGTCACAGCTGGTGagtatt
tcatttttgaaaaaggcgaaTCTCATGAGCATCGACAACTTATACTAAAG
TTATCGAAGAATTGTAAAGAAGTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATTCAAATTATATACCTATTAAACAT
GGAGTCCCTCAAGGTTCTGTGCTTGGCCCCCTCTTATTTATCATTTACAT
AAATGACCTCCATCGAGCGCTAGAAAATTCCACTACTTttcattttgctg
atgacactaGTCTGATCTGTTGTgataaatcaattaaaaaattaaatagg
AGAGTAAATAGGGACCTTGCTCTCCTTGTCCACTGGCTCAGAGCTAACAA
NTGCGCTAGAAAATTCCACTACATttcattttgctgatgacactaGTCTG
ATCTGTTGTgataaatcaattaaaaaattaaataggAGAGTAAATAGGGA
CCTTGCTCTCCTTGTCCACTGGCTCAGAGCTAACAAGATCAGCTTGAACA
CCTCCAAAACTGAACTTATTCTCTTTAGAAGCATCAGAAAATCATTTACA
AAAAACCTGAACTTCAGACTTAGTGGCCAAAAACTTCATCTCTCTAAGAA
GGCTAAGTATCTTGGAATTATTCTGGATGAACATCTCTCTTGGGAACCCC
AAGTCCACGATTTAACCGCTAAATTATCCCGAACAGTAGGCTTTCTGTCA
AAACTTAgacattttgttgattttaaatCCCTTCTTTCGATCTACTATGC
CTTATTTGATTCTCATGTGAACTATTgtcagggttcgaattatagcttcg
cacttcgcaaaatgcgaagtgaattttagatttagcgacccaaaaagatt
tcgtaactcaaaaatgcgaagttgaaaaattatattttgctacttctttc
atttatttattatcTATTGCTTTGTCAACTTGCCACTTcactactttatt
cactcgtttatctattgctttgtcaacttgccacttcgctactttattca
ctcgtttatctattgctttgtcAACTTGCCACTTcactactttattcact
cgtttatctattgctttgtcaacttgccacttcgctactttattcactcg
gttatctattgctttatctactcgccacttcgctactttattcattcgtt
tatctattgctttatatactcgccacttcgctactttattcattcgttta
tctattgctttgtcAACTTGCCACTTTGCAACTTTATttactcgtttatc
tattgctttatcaactcgccacttcgctactttattcactcgtttatcta
ttgctttatcaactcgctacctcgtaactttattcactcgtttatctatt
gctttatatactcgccacttcgctactttattcattcgtttatctattgc
tttatctactccccacttcgctactttattcactcgtttatctattgctt
tatctactcgccacttcgctactttattcattcgtttatctattgcttta
tctactccccacttcgctactttattcactcgtttatctattgctttatc
tactcgccacttcgctactttattcattcgtttatctattgctttatcta
ctccccacttcgctactttattcactcgtttatctattgctttatcaact
cgctactttGCAACTTTATTTaatcgtttatctattgctttatcaactcg
ctacctCGCAACTTTATTCACTCGTTTATCTATTGCTTTACTAGCTACTT
CAAAACTTCACTATTCTTTGCTTTGTCTATAATTTTTTACTTCAAATCTT
ACTTCGCTTTTCTCGAGAAATGCATTCAAGATACTTTCGCATTTCCTTCT
AAACAACATCGCAAAATAATGAAAATGCTTCGCAAACAGTGAAAAAAATT
CACCTGCGACGCTCCTTTTTTTACCTCGCTTCGCTAGAAAAAATAGCGAA
GCTCCTAAAATTTATAATTCGAACCCTGATTGTCTCCAGACTATCGGTTT
CATGACCCAGGCCTCGTTTAATAAAATCGAAGTTCTTCAAAATAAAGCCC
TGAGAATAATTCATTTCAAGCCTCCTAGACACTCTTCGCGTCCTCTATTT
ATTAAATCTGCAATTCTGCCTATCAAGAAACAACTCCAGGTGAAGAACTG
TCTATTTGCCTTTGATTTTTTACATGGTAAACTACCTACATATTTTGCTG
ACTTCCTTAGATACTCTCCTGTCCATGAAGGAACAAGACAATCAGAACAC
AAACTGGAACCTCCGAAAACAAAGACGGTAAAGTATGGGTCCTATAACAT
AGCTTCCCAGATAACTAAAGATTGGAATAATCTACACAAAAAACTTAACA
TTGGCGATTTCCGCAAGATTTCTAAACAAACCCTCAAAAAACATTTGCAT
CGTTTCATTCTCACTAAAATTGCGGAAACTTGACTCTCATAGGCTCTCTC
CCTCGCTCTTTCTCTCGTTATTTCTCTCTCCTTCTTTctttctctctttc
tctctccctctctctctctctcttctcACACTGAACCTTCTACCAAACTT
AATACTTGAATGTTCAAACTTTTAGGTTACCTCGAGGACACTAGTTTGTA
GGAACTATCTTTGTTGTTTCCCTTCCGTTTTTCCGNAAACAACATcgcaa
aataatgaaaatgcttcgcaaacagtgaaaaaaattcacctgCGACGCTC
CTTTTTTTACCTCGCTTCGCTAGAAAAAATAGCGAAGctcctaaaattta
taattcgaaccctgNCATTAATAATACCTAGTACACATTAAGCTTcaatg
attttcattttcatagtgAAGGACAACTTAAGCTAGTAGTATGTAATTAT
ATCATAtgtataaagtttttaaaatgtaaatatttcatccaactaaaatg
taaattttacaCGTAGAAAATTTATCGGTAAATatatttatctatctatc
tNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCCAATATCtatcatagacctttttttaatgaggccaccc
tgttgaataattatgtagtccagcaaaaaaaaacaatgatatagccatgc
atgATTATtatatgcatgaaacagtaattatgcatggctgtatcattgtt
tttatgctggactacataattattcaacagggttgcctctttaaaaaagg
tctatttcatcggggaggaaaaactggaacttttactaaccaaactcatc
gaacaccaatcaaacttcatcagataaaaaactgtcaaacAATCGTATAG
TCAAACTtatcaaaagattttcttaccaaatcaggttcggtaatcgaaca
gctatcattttggtttgatttcgaTGGATAGTTCCACAGTTCGATTAACG
GNGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACCCAACAAAAGAC
AACAATGAACtagcagaaaaagtttgcaAAGGACAATGTCttcatttgaa
aagaaattgtggTCAAATGCTTGGATGTGGTTATGCAAAATTTGACGTAT
CAAAACATTGTCCTGAAACTTGCGCTGCCACGACTGGTGagtctttcatt
tttgaaaaaggcgaaCCTCATGAGCATCGACAACTTATATACTAAAGTTA
TCGAAGAATTATAAAGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGA
CCCAACAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGACAAT
GTCttcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTTATGCA
AAATTTGACGTATCAAAACATTGTCCTGAAACTTGCGCTGCCACGACTGG
TGagtctttcatttttgaaaaaggcgaaCCTCATGAGCATCGACAACTTA
TATACTAAAGTTATCGAAGAATTATAAAGAAGTTTAATGCAAAGATTGTC
CTTACATTGTAGACCCAACAAAAGACAACAATGAACtagcagaaaaagtt
tgcaAAGGACAATGTCttcatttgaaaagaaattgtggTCAAATGCTTGG
ATGTGGTTATGCAAAATTTGACGTATCAAAACATTGTCCTGAAACTTGCG
CTGCCACGACTGGTGagtctttcatttttgaaaaaggcgaaCCTCATGAG
CATCGACAACTTATATACTAAAGTTATCGAAGAATTATAAAGAAGTTTAA
TGCAAAGATTGTCCTTACATTGTAGACCCAACAAAAGACAACAATGAACt
agcagaaaaagtttgcaAAGGACAATGTCttcatttgaaaagaaattgtg
gTCAAATGCTTGGATGTGGTTATGCAAAATTTGACGTATCAAAACATTGT
CCTGAAACTTGCGCTGCCACGACTGGTGagtctttcatttttgaaaaagg
cgaaCCTCATGAGCATCGACAACTTATATACTAAAGTTATCGAAGAATTA
TAAAGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACCCAACAAAAG
ACAACAATGAACtagcagaaaaagtttgcaAAGGACAATGTCttcatttg
aaaagaaattgtggTCAAATGCTTGGATGTGGTTATGCAAAATTTGACGT
ATCAAAACATTGTCCTGAAACTTGCGCTGCCACGACTGGTGagtctttca
tttttgaaaaaggcgaaCCTCATGAGCATCGACAACTTATATACTAAAGT
TATCGAAGAATTATAAAGAAGTTTAATGCAAAGATTGTCCTTACATTGTA
GACCCAACAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGACA
ATGTCttcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTTATG
CAAAATTTGACGTATCAAAACATTGTCCTGAAACTTGCGCTGCCACGACT
GGTGagtctttcatttttgaaaaaggcgaaCCTCATGAGCATCGACAACT
TATATACTAAAGTTATCGAAGAATTATAAAGAAGTTTAATGCAAAGATTG
TCCTTACATTGTAGACCCAACAAAAGACAACAATGAACtagcagaaaaag
tttgcaAAGGACAATGTCttcatttgaaaagaaattgtggTCAAATGCTT
GGATGTGGTTATGCAAAATTTGACGTATCAAAACATTGTCCTGAAACTTG
CGCTGCCACGACTGGTGagtctttcatttttgaaaaaggcgaaCCTCATG
AGCATCGACAACTTATATACTAAAGTTATCGAAGAATTATAAAGAAGTTT
AATGCAAAGATTGTCCTTACATTGTAGACCCAACAAAAGACAACAATGAA
CtagcagaaaaagtttgcaAAGGACAATGTCttcatttgaaaagaaattg
tggTCAAATGCTTGGATGTGGTTATGCAAAATTTGACGTATCAAAACATT
GTCCTGAAACTTGCGCTGCCACGACTGGTGagtctttcatttttgaaaaa
ggcgaaCCTCATGAGCATCGACAACTTATATACTAAAGTTATCGAAGAAT
TATAAAGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACCCAACAAA
AGACAACAATGAACtagcagaaaaagtttgcaAAGGACAATGTCttcatt
tgaaaagaaattgtggTCAAATGCTTGGATGTGGTTATGCAAAATTTGAC
GTATCAAAACATTGTCCTGAAACTTGCGCTGCCACGACTGGTGagtcttt
catttttgaaaaaggcgaaCCTCATGAGCATCGACAACTTATATACTAAA
GTTATCGAAGAATTATAAAGAAGTTTAATGCAAAGATTGTCCTTACATTG
TAGACCCAACAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGA
CAATGTCttcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTTA
TGCAAAATTTGACGTATCAAAACATTGTCCTGAAACTTGCGCTGCCACGA
CTGGTGagtctttcatttttgaaaaaggcgaaCCTCATGAGCATCGACAA
CTTATATACTAAAGTTATCGAAGAATTATAAAGAAGTTTAATGCAAAGAT
TGTCCTTACATTGTAGACCCAACAAAAGACAACAATGAACtagcagaaaa
agtttgcaAAGGACAATGTCttcatttgaaaagaaattgtggTCAAATGC
TTGGATGTGGTTATGCAAAATTTGACGTATCAAAACATTGTCCTGAAACT
TGCGCTGCCACGACTGGTGagtctttcatttttgaaaaaggcgaaCCTCA
TGAGCATCGACAACTTATATACTAAAGTTATCGAAGAATTATAAAGAAGT
TTAATGCAAAGATTGTCCTTACATTGTAGACCCAACAAAAGACAACAATG
AACtagcagaaaaagtttgcaAAGGACAATGTCttcatttgaaaagaaat
tgtggTCAAATGCTTGGATGTGGTTATGCAAAATTTGACGTATCAAAACA
TTGTCCTGAAACTTGCGCTGCCACGACTGGTGagtctttcatttttgaaa
aaggcgaaCCTCATGAGCATCGACAACTTATATACTAAAGTTATCGAAGA
ATTATAAAGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACCCAACA
AAAGACAACAATGAACtagcagaaaaagtttgcaAAGGACAATGTCttca
tttgaaaagaaattgtggTCAAATGCTTGGATGTGGTTATGCAAAATTTG
ACGTATCAAAACATTGCCCTGAAACTTGCGCTGCCACGACTGGTGagtct
ttcatttttgaaaaaagcgaATCTCATGAGGATCGACAACTTATATACTA
AAGTTATCGAAGAATTATAAAGAAGTTTAATGCAAAGATTGTCCTTACAT
TGTAGACCCAACAAAAGACAACAATGAACtagcagaaaaagtttgcaAAG
GACAATGTCttcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGT
TATGCAAAATTTGACGTATCAAAACATTGTCCTGAAACTTGCGCTGCCAC
GACTGGTGagtctttcatttttgaaaaaggcgaaCCTCATGAGCATCGAC
AACTTATATACTAAAGTTATCGAAGAATTATAAAGAAGTTTAATGCAAAG
ATTGTCCTTACATTGTAGACCCAACAAAAGACAACAATGAACtagcagaa
aaagtttgcaAAGGACAATGTATTCATTTGAAAAGAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGTAGACCCAACAAA
AGACAACAATGAACtagcagaaaaagtttgcaAAGGACAATGTattcatt
tgaaaagaaattgtggTCAAATGCTTGGATGTGGTGATGCAAGATTTGAC
GTATCAAAACATTGCCCTGAAACTTGCACTGCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00071300-exon-scaffold_60-1491911889:1241616..1241737 | TCONS_00071300-exon-scaffold_60-1491911889:1241616..1241737 | Clytia hemisphaerica | exon |
TCONS_00071300-exon-scaffold_60-1510915933:1241616..1241737 | TCONS_00071300-exon-scaffold_60-1510915933:1241616..1241737 | Clytia hemisphaerica | exon |
TCONS_00071300-exon-scaffold_60-1575043694:1241616..1241737 | TCONS_00071300-exon-scaffold_60-1575043694:1241616..1241737 | Clytia hemisphaerica | exon |
TCONS_00071300-exon-scaffold_60-1491911889:1255076..1255100 | TCONS_00071300-exon-scaffold_60-1491911889:1255076..1255100 | Clytia hemisphaerica | exon |
TCONS_00071300-exon-scaffold_60-1510915933:1255076..1255100 | TCONS_00071300-exon-scaffold_60-1510915933:1255076..1255100 | Clytia hemisphaerica | exon |
TCONS_00071300-exon-scaffold_60-1575043694:1255076..1255100 | TCONS_00071300-exon-scaffold_60-1575043694:1255076..1255100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_60 | supercontig | scaffold_60:1241616..1255100 + |
Blast
The following BLAST results are available for this feature:
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