TCONS_00071298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071298
Unique NameTCONS_00071298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071298 ID=TCONS_00071298|Name=TCONS_00071298|organism=Clytia hemisphaerica|type=transcript|length=179bp
ATTGGTTTCAATAACATTGTCATCCCAAAACCCAACAAAAGACAACAATG
AACtagcagaaaaagtttgcaAAGGACAATGTCttcatttgaaaagaaat
tgtggTCAAATGCTTGGATGTGGTTATGCAAAATTTGACGTATCAAAACA
TTGCCCTGAAACTTGCGCTGCCACGACTG
Run BLAST on NCBI

transcript from alignment at scaffold_60:1241157..1254457+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071298 ID=TCONS_00071298|Name=TCONS_00071298|organism=Clytia hemisphaerica|type=transcript|length=13301bp|location=Sequence derived from alignment at scaffold_60:1241157..1254457+ (Clytia hemisphaerica)
ATTGGTTTCAATAACATTGTCATCCCAAAGTAAGTCAAAGTTTCTTTTAT
TGGAGATTTTTTGGCAAAGCTCAGTAATACAGCGGAaactctttaattcg
aacctcaAATAATCTCTTGAatttgaacaagttttctcgtctcTTTAGTT
ACCAAAACCTCATAAAACTTAcatcataactcgaaatttccttaactcga
acaaatttgtgatCCCCGTGCTATTGACGTTTCAAAACATTGCCCTATAA
CTTGCAAATCTTCAACAGGTAGTCTTCTTATAGAAATCCAATCTGTTGTG
TTACGAAAGGGGTTACGAGTAAGATCCTAAGGATTAATCAAGGGAATTAA
GCTCTTAGATGGACAGGCAAGGATAAACTAGCTGGTGGTGGACCCcgtaa
aaacaatcaaaagagtACTGGGCTATCgaagaaaatcttttgattCTTTC
TATTTATTTAGACCCGAGAAAAGACAACAATGAACtagcagaaaaagttt
gcaAAGGACAATGTattcatttgaaaagaaattgtggTCAAATGCTTGGA
TGTGGTGACGCAAGATTTGACGTATCAAAACATTGCCCTGAAACTTGCGC
TGCCACAGCAGGTGAGTATTCAATTTTGATAAACAgcgattagtatatgt
aatcacatgataacgagtgcaattcgaatataattgcaccagtgattttt
ttgttattaatttttcgagtccgaaaggacaaggaaaattcgaaacaaaa
aaatcacgagtgcaattttcgaattgtacaaATTGTACAAACAATTGTAA
AGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACCAAACAAAAGACA
ACAATGAACtagcagaaaaagtttgcaAAGGACAATGTattcatttgaaa
agaaattgtggTCAAATGCTTGGATGTGGTAACGCAAAATTTGACGTATC
AAAACATTGCCCTGAAACTTGCACTGCCACAGCTGGTGagtatttcattt
ttgaaaaaggcgaaTCTCATGAGCATCGACAACTTATACTAAAGTTATCG
AAGAATTGTAAAGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACCC
AACAAAAGACAACAATGAACTAGCAAACAAAGTTTGCAAAGGACTATGTA
TTCATTTGAAAAGACATTGTGGTCAAATGCTTGGATGTGGTGACGCAAGA
TTTGACGTATCAAAACATTGCCCTGAAACTTGCGCTGCCACGGCTGGTGa
gtatttcatttttgaaaaaggcaaATCTCATGAGCATCGACAACTTATAC
TAAAGTTATCAAAGAATTGTAAAGGAGTTTAATGCAAAGATTTTCCTTAC
ATTGTAGACCCAACAAAAGACAACAATGAACtagcagaaaaagtttgcaA
AGGACAATGTattcatttgaaaagaaattgtggTCAAATGCTTGGATGTG
GTGATGCAAGATTTGACGTATCAAAACATTGCCCTGAAACTTGCACTGCC
ACGACTGGTGggtatttaattttgaaaaacagcGACTTACGTCACAATCA
TAAACAATTTATATTAAAATTATCAAAGAATTTTAATGAAGTTTAATGCA
GAAATTTTCCTTACATTGTAGACCTGACAAAAGACAACAATGAACtagca
gaaaaagtttgcaAAGGACAATGTATTCATTTGAAAAGACATTGTGGTCA
ACTGCTTGGATGTGGTTATGCAAGATTTGACGTATCAAAACATTGCCCTG
AAACTTGCGCTGCCACGGCTGGTGAGTATTATATTTTCGAAAAAGGCGAC
TCTCATGAGCATCGACGACTTATACTAAAGTTATCGAAGAATTGTAAAGA
AGTTTAATGGAAAGATTGTCCTTACATTGTAGACCCAACAAAAGACAACA
ATGAACtagcagaaaaagtttgcaAAGGACAATGTattcatttgaaaaga
aattgtggTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NAGGACAATGTattcatttgaaaagaaattgtggTCAAATGCTTGGATGT
GGTAACGCAAGATTTGACGTATCAAAACATTGCCCTGAAACTTGCGCTGT
CACGGCCAGTGAGTATTTCACTTTTGAAAAAGGCAAATCTCATGAGCATC
GACAACTTAtaccaaaattatcaaagaaTTGTAATGAAGTTTAATGCAAA
GATTTTCCTTACATTGTAGACCCGACAAAAGACAACAATGAACtagcaga
aaaagtttgcaAAGTACTATGTATTCATTTGAAAAGACATTGTGGTCAAA
TGCCTAGATGTGGTGACGCAAGATTTGACGTATCAAAACATTGCCCTGAA
ACTTGCAAAGCCACAGTTGGTGAGTATTTCATTTTCGCAAAAGGCAAATC
TTATGAGCATCGACTACTTATACTAAAATTATCGAAGAATTGTAATGAAG
TTTAATGCAAAGACTTTCCTTAAAATGTAGACCCAACAAAAGACAACAAT
GAACtagcagaaaaagtttgcaAAGGACAATGTattcatttgaaaagaaa
ttgtggTCAAATGCTTGGATGTGGTTACNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGTAG
ACCCAACAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGACAA
TGTattcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTTATGC
AAAATTTGACGTATCAAAACTTTGCCCTGAAACTTGCGCTGTCACAGCTG
GTGagtatttcatttttgaaaaaggcgaaTCTCATGAGCATCGACAACTT
ATACTAAAGTTATCGAAGAATTGTAAAGAAGTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAAATTATATACCT
ATTAAACATGGAGTCCCTCAAGGTTCTGTGCTTGGCCCCCTCTTATTTAT
CATTTACATAAATGACCTCCATCGAGCGCTAGAAAATTCCACTACTTttc
attttgctgatgacactaGTCTGATCTGTTGTgataaatcaattaaaaaa
ttaaataggAGAGTAAATAGGGACCTTGCTCTCCTTGTCCACTGGCTCAG
AGCTAACAANTGCGCTAGAAAATTCCACTACATttcattttgctgatgac
actaGTCTGATCTGTTGTgataaatcaattaaaaaattaaataggAGAGT
AAATAGGGACCTTGCTCTCCTTGTCCACTGGCTCAGAGCTAACAAGATCA
GCTTGAACACCTCCAAAACTGAACTTATTCTCTTTAGAAGCATCAGAAAA
TCATTTACAAAAAACCTGAACTTCAGACTTAGTGGCCAAAAACTTCATCT
CTCTAAGAAGGCTAAGTATCTTGGAATTATTCTGGATGAACATCTCTCTT
GGGAACCCCAAGTCCACGATTTAACCGCTAAATTATCCCGAACAGTAGGC
TTTCTGTCAAAACTTAgacattttgttgattttaaatCCCTTCTTTCGAT
CTACTATGCCTTATTTGATTCTCATGTGAACTATTgtcagggttcgaatt
atagcttcgcacttcgcaaaatgcgaagtgaattttagatttagcgaccc
aaaaagatttcgtaactcaaaaatgcgaagttgaaaaattatattttgct
acttctttcatttatttattatcTATTGCTTTGTCAACTTGCCACTTcac
tactttattcactcgtttatctattgctttgtcaacttgccacttcgcta
ctttattcactcgtttatctattgctttgtcAACTTGCCACTTcactact
ttattcactcgtttatctattgctttgtcaacttgccacttcgctacttt
attcactcggttatctattgctttatctactcgccacttcgctactttat
tcattcgtttatctattgctttatatactcgccacttcgctactttattc
attcgtttatctattgctttgtcAACTTGCCACTTTGCAACTTTATttac
tcgtttatctattgctttatcaactcgccacttcgctactttattcactc
gtttatctattgctttatcaactcgctacctcgtaactttattcactcgt
ttatctattgctttatatactcgccacttcgctactttattcattcgttt
atctattgctttatctactccccacttcgctactttattcactcgtttat
ctattgctttatctactcgccacttcgctactttattcattcgtttatct
attgctttatctactccccacttcgctactttattcactcgtttatctat
tgctttatctactcgccacttcgctactttattcattcgtttatctattg
ctttatctactccccacttcgctactttattcactcgtttatctattgct
ttatcaactcgctactttGCAACTTTATTTaatcgtttatctattgcttt
atcaactcgctacctCGCAACTTTATTCACTCGTTTATCTATTGCTTTAC
TAGCTACTTCAAAACTTCACTATTCTTTGCTTTGTCTATAATTTTTTACT
TCAAATCTTACTTCGCTTTTCTCGAGAAATGCATTCAAGATACTTTCGCA
TTTCCTTCTAAACAACATCGCAAAATAATGAAAATGCTTCGCAAACAGTG
AAAAAAATTCACCTGCGACGCTCCTTTTTTTACCTCGCTTCGCTAGAAAA
AATAGCGAAGCTCCTAAAATTTATAATTCGAACCCTGATTGTCTCCAGAC
TATCGGTTTCATGACCCAGGCCTCGTTTAATAAAATCGAAGTTCTTCAAA
ATAAAGCCCTGAGAATAATTCATTTCAAGCCTCCTAGACACTCTTCGCGT
CCTCTATTTATTAAATCTGCAATTCTGCCTATCAAGAAACAACTCCAGGT
GAAGAACTGTCTATTTGCCTTTGATTTTTTACATGGTAAACTACCTACAT
ATTTTGCTGACTTCCTTAGATACTCTCCTGTCCATGAAGGAACAAGACAA
TCAGAACACAAACTGGAACCTCCGAAAACAAAGACGGTAAAGTATGGGTC
CTATAACATAGCTTCCCAGATAACTAAAGATTGGAATAATCTACACAAAA
AACTTAACATTGGCGATTTCCGCAAGATTTCTAAACAAACCCTCAAAAAA
CATTTGCATCGTTTCATTCTCACTAAAATTGCGGAAACTTGACTCTCATA
GGCTCTCTCCCTCGCTCTTTCTCTCGTTATTTCTCTCTCCTTCTTTcttt
ctctctttctctctccctctctctctctctcttctcACACTGAACCTTCT
ACCAAACTTAATACTTGAATGTTCAAACTTTTAGGTTACCTCGAGGACAC
TAGTTTGTAGGAACTATCTTTGTTGTTTCCCTTCCGTTTTTCCGNAAACA
ACATcgcaaaataatgaaaatgcttcgcaaacagtgaaaaaaattcacct
gCGACGCTCCTTTTTTTACCTCGCTTCGCTAGAAAAAATAGCGAAGctcc
taaaatttataattcgaaccctgNCATTAATAATACCTAGTACACATTAA
GCTTcaatgattttcattttcatagtgAAGGACAACTTAAGCTAGTAGTA
TGTAATTATATCATAtgtataaagtttttaaaatgtaaatatttcatcca
actaaaatgtaaattttacaCGTAGAAAATTTATCGGTAAATatatttat
ctatctatctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCAATATCtatcatagacctttttttaatg
aggccaccctgttgaataattatgtagtccagcaaaaaaaaacaatgata
tagccatgcatgATTATtatatgcatgaaacagtaattatgcatggctgt
atcattgtttttatgctggactacataattattcaacagggttgcctctt
taaaaaaggtctatttcatcggggaggaaaaactggaacttttactaacc
aaactcatcgaacaccaatcaaacttcatcagataaaaaactgtcaaacA
ATCGTATAGTCAAACTtatcaaaagattttcttaccaaatcaggttcggt
aatcgaacagctatcattttggtttgatttcgaTGGATAGTTCCACAGTT
CGATTAACGGNGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACCCA
ACAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGACAATGTCt
tcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTTATGCAAAAT
TTGACGTATCAAAACATTGTCCTGAAACTTGCGCTGCCACGACTGGTGag
tctttcatttttgaaaaaggcgaaCCTCATGAGCATCGACAACTTATATA
CTAAAGTTATCGAAGAATTATAAAGAAGTTTAATGCAAAGATTGTCCTTA
CATTGTAGACCCAACAAAAGACAACAATGAACtagcagaaaaagtttgca
AAGGACAATGTCttcatttgaaaagaaattgtggTCAAATGCTTGGATGT
GGTTATGCAAAATTTGACGTATCAAAACATTGTCCTGAAACTTGCGCTGC
CACGACTGGTGagtctttcatttttgaaaaaggcgaaCCTCATGAGCATC
GACAACTTATATACTAAAGTTATCGAAGAATTATAAAGAAGTTTAATGCA
AAGATTGTCCTTACATTGTAGACCCAACAAAAGACAACAATGAACtagca
gaaaaagtttgcaAAGGACAATGTCttcatttgaaaagaaattgtggTCA
AATGCTTGGATGTGGTTATGCAAAATTTGACGTATCAAAACATTGTCCTG
AAACTTGCGCTGCCACGACTGGTGagtctttcatttttgaaaaaggcgaa
CCTCATGAGCATCGACAACTTATATACTAAAGTTATCGAAGAATTATAAA
GAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACCCAACAAAAGACAA
CAATGAACtagcagaaaaagtttgcaAAGGACAATGTCttcatttgaaaa
gaaattgtggTCAAATGCTTGGATGTGGTTATGCAAAATTTGACGTATCA
AAACATTGTCCTGAAACTTGCGCTGCCACGACTGGTGagtctttcatttt
tgaaaaaggcgaaCCTCATGAGCATCGACAACTTATATACTAAAGTTATC
GAAGAATTATAAAGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACC
CAACAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGACAATGT
CttcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTTATGCAAA
ATTTGACGTATCAAAACATTGTCCTGAAACTTGCGCTGCCACGACTGGTG
agtctttcatttttgaaaaaggcgaaCCTCATGAGCATCGACAACTTATA
TACTAAAGTTATCGAAGAATTATAAAGAAGTTTAATGCAAAGATTGTCCT
TACATTGTAGACCCAACAAAAGACAACAATGAACtagcagaaaaagtttg
caAAGGACAATGTCttcatttgaaaagaaattgtggTCAAATGCTTGGAT
GTGGTTATGCAAAATTTGACGTATCAAAACATTGTCCTGAAACTTGCGCT
GCCACGACTGGTGagtctttcatttttgaaaaaggcgaaCCTCATGAGCA
TCGACAACTTATATACTAAAGTTATCGAAGAATTATAAAGAAGTTTAATG
CAAAGATTGTCCTTACATTGTAGACCCAACAAAAGACAACAATGAACtag
cagaaaaagtttgcaAAGGACAATGTCttcatttgaaaagaaattgtggT
CAAATGCTTGGATGTGGTTATGCAAAATTTGACGTATCAAAACATTGTCC
TGAAACTTGCGCTGCCACGACTGGTGagtctttcatttttgaaaaaggcg
aaCCTCATGAGCATCGACAACTTATATACTAAAGTTATCGAAGAATTATA
AAGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACCCAACAAAAGAC
AACAATGAACtagcagaaaaagtttgcaAAGGACAATGTCttcatttgaa
aagaaattgtggTCAAATGCTTGGATGTGGTTATGCAAAATTTGACGTAT
CAAAACATTGTCCTGAAACTTGCGCTGCCACGACTGGTGagtctttcatt
tttgaaaaaggcgaaCCTCATGAGCATCGACAACTTATATACTAAAGTTA
TCGAAGAATTATAAAGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGA
CCCAACAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGACAAT
GTCttcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTTATGCA
AAATTTGACGTATCAAAACATTGTCCTGAAACTTGCGCTGCCACGACTGG
TGagtctttcatttttgaaaaaggcgaaCCTCATGAGCATCGACAACTTA
TATACTAAAGTTATCGAAGAATTATAAAGAAGTTTAATGCAAAGATTGTC
CTTACATTGTAGACCCAACAAAAGACAACAATGAACtagcagaaaaagtt
tgcaAAGGACAATGTCttcatttgaaaagaaattgtggTCAAATGCTTGG
ATGTGGTTATGCAAAATTTGACGTATCAAAACATTGTCCTGAAACTTGCG
CTGCCACGACTGGTGagtctttcatttttgaaaaaggcgaaCCTCATGAG
CATCGACAACTTATATACTAAAGTTATCGAAGAATTATAAAGAAGTTTAA
TGCAAAGATTGTCCTTACATTGTAGACCCAACAAAAGACAACAATGAACt
agcagaaaaagtttgcaAAGGACAATGTCttcatttgaaaagaaattgtg
gTCAAATGCTTGGATGTGGTTATGCAAAATTTGACGTATCAAAACATTGT
CCTGAAACTTGCGCTGCCACGACTGGTGagtctttcatttttgaaaaagg
cgaaCCTCATGAGCATCGACAACTTATATACTAAAGTTATCGAAGAATTA
TAAAGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACCCAACAAAAG
ACAACAATGAACtagcagaaaaagtttgcaAAGGACAATGTCttcatttg
aaaagaaattgtggTCAAATGCTTGGATGTGGTTATGCAAAATTTGACGT
ATCAAAACATTGTCCTGAAACTTGCGCTGCCACGACTGGTGagtctttca
tttttgaaaaaggcgaaCCTCATGAGCATCGACAACTTATATACTAAAGT
TATCGAAGAATTATAAAGAAGTTTAATGCAAAGATTGTCCTTACATTGTA
GACCCAACAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGACA
ATGTCttcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTTATG
CAAAATTTGACGTATCAAAACATTGCCCTGAAACTTGCGCTGCCACGACT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044308XLOC_044308Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071298-exon-scaffold_60-1491911889:1241157..1241185TCONS_00071298-exon-scaffold_60-1491911889:1241157..1241185Clytia hemisphaericaexon
TCONS_00071298-exon-scaffold_60-1510915933:1241157..1241185TCONS_00071298-exon-scaffold_60-1510915933:1241157..1241185Clytia hemisphaericaexon
TCONS_00071298-exon-scaffold_60-1575043694:1241157..1241185TCONS_00071298-exon-scaffold_60-1575043694:1241157..1241185Clytia hemisphaericaexon
TCONS_00071298-exon-scaffold_60-1491911889:1254308..1254457TCONS_00071298-exon-scaffold_60-1491911889:1254308..1254457Clytia hemisphaericaexon
TCONS_00071298-exon-scaffold_60-1510915933:1254308..1254457TCONS_00071298-exon-scaffold_60-1510915933:1254308..1254457Clytia hemisphaericaexon
TCONS_00071298-exon-scaffold_60-1575043694:1254308..1254457TCONS_00071298-exon-scaffold_60-1575043694:1254308..1254457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1241157..1254457 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	2.2918	13.3469	2.92457	23.364	37.9121	16.2078	34.022	3.29652	0	100.363	68.3866	0	0	0	0	0	2.10389	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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