TCONS_00071293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071293
Unique NameTCONS_00071293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071293 ID=TCONS_00071293|Name=TCONS_00071293|organism=Clytia hemisphaerica|type=transcript|length=1510bp
TCAGTATAAAAAATATACATAAGTACATCAACAATATAAAGATTAAAAAT
GTCGCTCAAAACGCTGCCAGTCTTGTTTTTGAACCTTGGAGGTGAGATGA
TGTATATCCTGGATCAACGACTAAATGCACAGAATATCCCTCCAGGAAAA
GCTAAAAAGGTGATGCATGATATTCTGGCAACAATGCTGAACAAAAGGTT
CATGGAAGAACTGTTTAAACCACAAGACGCTTATTCCAGGAAAGCTATGA
GGACCGTCTTTGATCGTTTGGCACATGCATCTATCATGCGATTGAATTCT
GCTAGTATGGATAAGttgTACGATTTAATGACCATGGCTTTAAAATATCA
AgtgAGTTTGAGCAAGCAACCGCAAGATGTTTTAATGGTCACACTTAATC
ATATGGACACAATTAGAGAATATTCACGTGGAAATTCACAAATCTTGGAA
CAAGTTGATTACGTTTACAGTCTTATTAACGAGGCGTATTCTACGATGAC
ACCAGGAGAATTTCAACTGATTCGTCAAACCTTACTCAACTTCTTCCAAG
ATATGCATATCAGGGTTTCCATCTTTTTAAAAGACAAAGTTCAAACACCG
AACGGAAGATTCATTCTACCCAAAGGTGGAAAAGTACCATGGGGATCAGA
AACACCCGGAGTCATCAGATTTTACAACGATCAAGGCGAACAAGCCAACT
TGTCCAGTTTTTTCGTTGAAGGAAAATATCAACTTCCCGACAAACCAGGC
TCTTTTGAAATACTTGGTGATCGAGGAACAAGGCTTGGTGTTAACATGTA
TACGATGGCGAGACCAGTGGAGACATCCATCTCAACAACCGAATCTGTTA
CCAGCAAGCCATCCATACAATCTACAAAATCGGAAGCAGATGATGTTAAT
AATACGGAATCAGCGAAAGCAGAATTGAACTTGTTGAACCATCTCCTTGC
TGGTGCTAACAAAGACTCGAAAGACTTCCGATTGAATCTGTTTGACTCTG
ACGCGCAAGAACAAGTTGCAGAGAAGCAATACGCAAAAGTTCGCCATCGT
GAAGTCGTTGTTGATGCAACACAGCGATCACAAAGAAGTGAGATTACGCA
ACTGATGAATGAATTCTCTATCGAAAGCTCTGGTGCAGGTGGTGATAAAG
GAGATGATTTATTGGCCTTGATGGATTCCACTTGAAATTATATTTCAAAC
TGTCAATCATTGCACTAACAAGTGAGATTTTAACGCGTCGTCAAATTTTT
ATAGGTATTTATTTAACTTTCTGTACTATACGggagaaattgaaatttta
tcaaTAGTTATTCCTCAAATAATTGGCAGTTAGTAAAAAGttaacaattt
taaaaaaaagttaatttttacttttaaacCACTGAATTAAACTATTATAA
ACTAAACTGAATTCAATAGGTTATATACCAAGTTTTAGTTTgcctttctt
ttttcttcacaataaagttttttttatagaaatacacatacacttttttt
ttttgtaagc
Run BLAST on NCBI

transcript from alignment at scaffold_60:1165311..1173952+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071293 ID=TCONS_00071293|Name=TCONS_00071293|organism=Clytia hemisphaerica|type=transcript|length=8642bp|location=Sequence derived from alignment at scaffold_60:1165311..1173952+ (Clytia hemisphaerica)
TCAGTATAAAAAATATACATAAGTACATCAACAATATAAAGATTAAAAAT
GTCGCTCAAAACGCTGCCAGTCTTGTTTTTGAACCTTGGAGGTGAGATGA
TGTATATCCTGGATCAACGACTAAATGCACAGAATATCCCTCCAGGAAAA
GCTAAAAAGGGTAAAGTttcatttaattatttttttaatttgatttaatt
tcTTCTTCGTCTTTCAGGGCTTTCAGCACTTCAAAcgtgtacactttttt
ttgaaaccCGGTATCAGGATTCGAAAGTCGACGACAAATACTTTGATTAA
GAATATTCACATAACTTCCCTCATCCTTCAGAATAGATTTTCGGAATTTT
CTTTCAGCAGCTGGTAATGAATGGTTTCTCATATTTTGATTATAGTGATG
CATGATATTCTGGCAACAATGCTGAACAAAAGGTTCATGGAAGAACTGTT
TAAACCACAAGACGCTTATTCCAGGAAAGCTATGAGGACCGTCTTTGATC
GTTTGGCACATGCATCTATCATGCGATTGAATTCTGCTAGTATGGATAAG
GTATTAAAACTACAAGATTTATCAGTGAAGGTTCACTATCAATTTTACAT
TACCCCTATATCAAGGAAAGACAATTTTTGTATTTGATTCTTCTCAAAAG
AATTTCTTTCGAACTGaaacattattttattttattattttttagttgTA
CGATTTAATGACCATGGCTTTAAAATATCAAGTAAGTACCGTATAACACT
ATTTTActctttttattatttctttGGTTTGTCAATTTATAAACCACTAA
TCCTGGgtttgataaaaaacaaagtttcCAAAcaaagtttggaaaaaaaa
ggaaaatgaaaatgaaaaatgaagaagaagaaaatcaattccttgtagaa
atgtggtataattaccattttcacaggagtgatttttggacctaccccgg
tggggtggaggtcctataaattaacccgtgttcgttagttagttagttag
ttagttagttaccaacttttctcgagattggNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaatagatatataa
atcgaaatttaaaattatacattacttccattaaattctaattattcgtt
ttataaataggtaggtccattaaagtattacttgttcaatcttagatcat
catcactgtcaaaaaattttcaaaaatattcattcaatctaAAGacatca
aacaaagtttattcctggttgactctataaagtagtaaaaaatgacaaaa
aaacagccaTTTGTTGATCatatggtaattataccacatttctacaagaa
gtagatttttttctttttcatttttcattttcattttcattttttttctc
aatttttttacttgataatattccactcacgaatatatttttaacgagca
caaagtcgcaacttgattcgaattctatcaaaagttacagccattttttt
ctccagctgtaaattattttgagacagactttagttttaTCTAAGGTTTA
ACTACTTCTGGTGTGGAAATTTAAAACTGAAATACAGAAAAGCTCAATTT
CAAGCCGTAATAGgaataacttttttataagaaaaaattgaaagttttta
aattagaacttttcttaagaaaaaattaaaaatctacCTTTAATAAAAGT
CTACCCTATCCTCTATCATCATCAGTGTCAGCTGCAGATTATTCTGAGAc
agacttttatttttattttaggtgAGTTTGAGCAAGCAACCGCAAGATGT
TTTAATGGTCACACTTAATCATATGGACACAATTAGAGAATATTCACGTG
GAAATTCACAAATCTTGGAACAAGTTGATTACGTTTACAGTCTTATTAAC
GAGGTATCAATCTCTATTGTAAAATATCTACCTTAAACCTCTGATTCCGT
GATattagtttttgttttgctCATTTCTTATATGTTTTCAATGTATATTT
CAATGTTCCAGCTTATCTAGTTGCATAAGAAAGTGCGTCAATGAAGATGG
AAATCTAAACCTGAAAATGTCATCTCATCTGAATCTTCATTTACAGTATG
GTTTTAAAAGTAAAACCTCttgattttaaattaattttggtgTANTGAAC
CTTCATTTAtggttttaaaaataaaacctcttGATTTTAGATTAATTTTG
GTGTATTTTTTTCCCAACAGGCGTATTCTACGATGACACCAGGAGAATTT
CAACTGATTCGTCAAACCTTACTCAACTTCTTCCAAGATATGCATATCAG
GGTAAGTTATTCCGTCAATTTCTCTAGCTATAAAGTGTTTAATGATTCTT
TTCTAGCCGATGATGTAGAGTTctattctttttgtttatcatttATATAT
CATTCATATATCATTTCACCCTCCCCCCCCTGAAAGGTACAACTCAAATC
AAACTCCTTagacaagaaagcctaagcggcGTAAACAAAAGGCCCAGTAG
TGTTGGTAGTGTCAACATAATTTTCCGTTGTACAGTCGCCATACAACCTT
AATTTACCGGATATATATCCTGAGCAACTATATTTAGAGCAACTAGAGTC
GGGCGATCAATTAAAAATTGATTATTCTAATTTTTATGAGATATAAGTAT
CTCTTACTGTTTCAATATAAAGATTTGACCATATCATATTAATTATATGT
GGTTTTTCTTACGCATGCGAACAATAGTAAGTCAGATAATTCGATTTTTA
GCCTAGACTCGTCAACTGATAATTGCGCGcataggccccgacaaagtcaa
ATTTCGACCAGTTGTGTTTTAAAGGCCCATTCCGCTGCGCGCTTggccaa
aaaacgtaaaaagtcTCTCGAAACCCCCTGAGGTTTCTTGTTTGTTCGAC
CACCCCCATGTATGAATATAAACCGATATCAAATTAAATTGTCCATTTTA
CGTGTTTTTTCTTCATTCTACTTTCTAGGTTTCCATCTTTTTAAAAGACA
AAGTTCAAACACCGAACGGAAGATTCATTCTACCCAAAGGTGGAAAAGTA
CCATGGGGATCAGAAACACCCGGAGTCATCAGGTAATtgattttgaatct
ttttttatcAGTCTTTTATATTTAATGCATTGTAAGATCTCTTGGGGGGA
GGAAAGGAAAtcgatttttttaatatttttaattaaGGAAATTGGCTGTT
ATGGGTTTTAAGAATAAAGTGTCGTTTTGTCGTTGTTTTACAGAGTGATG
AAGAGAAAAACTAAGCAAGACCATGAAGTTTCGGTTGATACTCTCAGAAG
ATCTTATGATTTCAGTTTAAAGACTTCACTCTTCTTGACACCCGAAGCTC
TAAATTTAGAAACTTCCTTAGAAAGCAGCTGGAGTTTATCTTATCATCTT
GTAAAACCTTTATAAACTGTGCAGTTTTTTGAATGAGAATAATTAATTAA
TCTTTCAGGCTGTAATATCCCCTCGTGGCCTAATTTTTTCTTCTGCCATA
CTAACTTTTATCTCTTcagaatttcaaaatcaaattttgagaacaaaagg
tttactGAACTGGCAATGTAAGTTTGGAAACAgaagattgtttaaaattt
caagtCGTACAATAACGAGTTTATAAaacacaatttcttttttactaTAG
ATTTTACAACGATCAAGGCGAACAAGCCAACTTGTCCAGTTTTTTCGTTG
AAGGAAAATATCAACTTCCCGACAAACCAGGCTCTTTTGAAATACTTGGT
GATCGAGGAACAAGGCTTGGTGTTAACATGTAAGTGATTGCGACGACCTA
TACCCCCTTCCATCAGAAAATTGGGGTTCCCTTTTTGTAGTTATACCGTT
TTGAGGAATGAATGCAATGAAAATCTAAACTTCACAGTTCATGTCCGCTA
ATTTTAATTAATCTATATTTTCTGTGCAGTTATTATTAATCGctagtacc
ttatcggggagaAAAGTCGGAATTTTTACAGATGAGAAAGATTTAAGTCA
CTTTCCCCAAAAAAACTTGACCCGgtctatttttttcctttttctccgAC
TAGAAAATAACGATTACCGTAACGGCAGTGCAGAAAATACAGATTAACCA
AGAATACCAGACAGAGAAAAATGGCCTCTCCTTTCCCTCGGCTAGTCTTT
TAAGCTACCTTACcttcccagccggcacacaacgttatttcaacgtccat
acaacgttcataacgtccatataacgttagatgaacgttgaaacaacgtt
gggtGCCAGCTGGGTTTAGTGTTGAACTCTAACAAAATCTTAGATTTTTG
ATTTGTGAAAAAAAAGTCCACATGAAAATTAATCCACCTTGATATACCTT
TTCATTCAGGTATACGATGGCGAGACCAGTGGAGACATCCATCTCAACAA
CCGAATCTGTTACCAGCAAGCCATCCATACAATCTACAAAATCGgtatat
tttgatttctttctctGTGTCCATTGTGTTTAAGGCCTTATTTAACGCAT
CCAGAAAATAAATTTAGTCGTATTTGAAAAGTTGAACCTCGTGAACCGAA
AATATGACCTAATAAGGTTGGCcatcgcggtgtcactaaacttcagcccc
cccccaatataaaaatgcttcctacggcactgacaTTTGTTTTTAATTCT
CATATCCATAGGAAGCAGATGATGTTAATAATACGGAATCAGCGAAAGCA
GAATTGAACTTGTTGAACCATCTCCTTGCTGGTGCTAACAAAGGTTTGAT
CGCATTAACATTATTATTCTGAAAGTTGCTTTAGCGAGTTTCTCCATCAT
GGGTTTTGTAATTGCTAGCTGATCAAATATGTGCTCTGGTTTAATATGTA
TCAATAAATTTCGGGGATCGTAATTATGACTAATTTAGGCGTTGTCTATA
ATAATAACTTTTATACTTCCTGCTTCAATCAAGGCAATAAAATATTAAGT
TTGGGGTAAAAATATTGTCGGCTAAACTTTTTGTCGAGTACGATTGATGT
CGAGTAAGACCAAAAAGCTGACACAGTTCTCACGTCAAAACTTgtaattt
gaatatcttttttttttctcaggacCATAACAAAATCAACAGTCCAAATT
ACTCAAACTATCAGACTATTCTTTAAAACccttttgtttgtatttttccA
TTTAGACTCGAAAGACTTCCGATTGAATCTGTTTGACTCTGACGCGCAAG
AACAGTAAGAGAAAATCTTTTCTTTGATTAACAATTTTCTCTgttataaa
caataaaattcaaaactaaCTAGGGTATGACTAGAAAAACTGATGACCAA
ATCATAGTGTAGTAGCGTCGTTTATACGAACTAGAACTAATTATTATCCC
GTAACAGTTTGCGTACTCTCATATAACCTATATCACTGCTTAAAGGCCGA
TCTCCATTTTCGCGCGAAATgagcgacagtttttttcttaaccttttttg
cctgaagaaaagattacgtcataaaaaagtttcgcgcgaacaaacaaaaa
tttgagggAAGTGCTACTTTTTTCATctgttacgtcaatttcgaccaatg
gaattgcttcatttttcaaccgaccaatgaccttacaaaaacgtcaaaaa
gttttcgctcatgtcgcgcgaaagtggagaccggccttaacacGTAATAT
ATAAAcgagtctacttctgactgaactttgatTTCTGACGATTTTGAGGG
CGCTGGAGTACAGTCAgcgtcatccagtctatcaaaaatcTATAAGTGGC
CCCCGGGCTACAAAATTCCTTGTCACATATTTTTTTGTCGTGGTTTGATC
AAATATTTCCTTTTACTAATACTCTTTTCAGTAAGGTTCATCACCGGCAC
CCTTCATATTATTTTCACTGACTATGTTTTCACTTCGAGATGATCGCTCA
AATTAATATAAACATTGGCATTCTATTTTCTTTTCCAGAGTTGCAGAGAA
GCAATACGCAAAAGTTCGCCATCGTGAAGTCGTTGTTGATGCAACACAGG
TATAAACAGTAAAATAAAGAGATAAAGTTGCTTCAAGATTCTGAGAAACA
GAGACAACTGAAAATTTTGGGGCATTTTTCATCCGGGTTAATTGTCTAGG
GGTAATAGTCCCTATTGCTATTGGTATTTGTTCAGGGAGCACCTACTTTC
CTCGGGACCAATTTTCTCAGTTCTGTCCTGTCACGATGCTTATATGATGT
CTACTCATAAGGaaagttgtttttgaatttccaaaCTCGTTAGCTTCTTT
ATATTACACATTTTACGATGTcgtaatttttcatttgaatttcatttcaa
CAACTTTAGCGATCACAAAGAAGTGAGATTACGCAACTGATGAATGAATT
CTCTATCGAAAGCTCTGGTGCAGGTACTCtcaccattttttgaatttctc
ttGATATTACGAACTATAATTTAGGTAACCCTTTTTCAAAGACCACAATA
CAGGAGATAGCACACTGACATAATTTCAACCGAACACTGTAGATCTCCTC
ATGAATAGTTCATTTATCCACCATCGTAAAAGAgcattatatttcaaaat
aggGGTGCCATACCTactgaagttttttttaaattaatttttcaaaaggt
aCATTCACGGTAAAGTCCAGTATTTTCATCCTTTCTGGGTGTTACCAATG
CTGTTTGGTATGTGTGGACGGTTAGGGTAAGCTTTTCGACCCTCCCCAAG
TCTCTAAAGGGTTACAAAAAGGACAAAACGTAAGAATAGTCTCTCTAGTA
GTCAGGATTCCCGTCCCCTCCCTTGTACCAATGACGACGATTTTtagtag
tttttttttcatctttacaGGTGGTGATAAAGGAGATGATTTATTGGCCT
TGATGGATTCCACTTGAAATTATATTTCAAACTGTCAATCATTGCACTAA
CAAGTGAGATTTTAACGCGTCGTCAAATTTTTATAGGTATTTATTTAACT
TTCTGTACTATACGggagaaattgaaattttatcaaTAGTTATTCCTCAA
ATAATTGGCAGTTAGTAAAAAGttaacaattttaaaaaaaagttaatttt
tacttttaaacCACTGAATTAAACTATTATAAACTAAACTGAATTCAATA
GGTTATATACCAAGTTTTAGTTTgcctttcttttttcttcacaataaagt
tttttttatagaaatacacatacactttttttttttgtaagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044307XLOC_044307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071293-exon-scaffold_60-1491911889:1165311..1165470TCONS_00071293-exon-scaffold_60-1491911889:1165311..1165470Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1165311..1165470TCONS_00071293-exon-scaffold_60-1510915933:1165311..1165470Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1165311..1165470TCONS_00071293-exon-scaffold_60-1575043694:1165311..1165470Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1491911889:1165706..1165860TCONS_00071293-exon-scaffold_60-1491911889:1165706..1165860Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1165706..1165860TCONS_00071293-exon-scaffold_60-1510915933:1165706..1165860Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1165706..1165860TCONS_00071293-exon-scaffold_60-1575043694:1165706..1165860Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1491911889:1166006..1166041TCONS_00071293-exon-scaffold_60-1491911889:1166006..1166041Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1166006..1166041TCONS_00071293-exon-scaffold_60-1510915933:1166006..1166041Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1166006..1166041TCONS_00071293-exon-scaffold_60-1575043694:1166006..1166041Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1491911889:1168532..1168663TCONS_00071293-exon-scaffold_60-1491911889:1168532..1168663Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1168532..1168663TCONS_00071293-exon-scaffold_60-1510915933:1168532..1168663Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1168532..1168663TCONS_00071293-exon-scaffold_60-1575043694:1168532..1168663Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1491911889:1168981..1169061TCONS_00071293-exon-scaffold_60-1491911889:1168981..1169061Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1168981..1169061TCONS_00071293-exon-scaffold_60-1510915933:1168981..1169061Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1168981..1169061TCONS_00071293-exon-scaffold_60-1575043694:1168981..1169061Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1491911889:1169739..1169842TCONS_00071293-exon-scaffold_60-1491911889:1169739..1169842Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1169739..1169842TCONS_00071293-exon-scaffold_60-1510915933:1169739..1169842Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1169739..1169842TCONS_00071293-exon-scaffold_60-1575043694:1169739..1169842Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1491911889:1170411..1170539TCONS_00071293-exon-scaffold_60-1491911889:1170411..1170539Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1170411..1170539TCONS_00071293-exon-scaffold_60-1510915933:1170411..1170539Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1170411..1170539TCONS_00071293-exon-scaffold_60-1575043694:1170411..1170539Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1491911889:1171120..1171204TCONS_00071293-exon-scaffold_60-1491911889:1171120..1171204Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1171120..1171204TCONS_00071293-exon-scaffold_60-1510915933:1171120..1171204Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1171120..1171204TCONS_00071293-exon-scaffold_60-1575043694:1171120..1171204Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1491911889:1171422..1171503TCONS_00071293-exon-scaffold_60-1491911889:1171422..1171503Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1171422..1171503TCONS_00071293-exon-scaffold_60-1510915933:1171422..1171503Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1171422..1171503TCONS_00071293-exon-scaffold_60-1575043694:1171422..1171503Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1491911889:1171916..1171964TCONS_00071293-exon-scaffold_60-1491911889:1171916..1171964Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1171916..1171964TCONS_00071293-exon-scaffold_60-1510915933:1171916..1171964Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1171916..1171964TCONS_00071293-exon-scaffold_60-1575043694:1171916..1171964Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1491911889:1172699..1172759TCONS_00071293-exon-scaffold_60-1491911889:1172699..1172759Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1172699..1172759TCONS_00071293-exon-scaffold_60-1510915933:1172699..1172759Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1172699..1172759TCONS_00071293-exon-scaffold_60-1575043694:1172699..1172759Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1491911889:1173070..1173133TCONS_00071293-exon-scaffold_60-1491911889:1173070..1173133Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1173070..1173133TCONS_00071293-exon-scaffold_60-1510915933:1173070..1173133Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1173070..1173133TCONS_00071293-exon-scaffold_60-1575043694:1173070..1173133Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1491911889:1173581..1173952TCONS_00071293-exon-scaffold_60-1491911889:1173581..1173952Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1510915933:1173581..1173952TCONS_00071293-exon-scaffold_60-1510915933:1173581..1173952Clytia hemisphaericaexon
TCONS_00071293-exon-scaffold_60-1575043694:1173581..1173952TCONS_00071293-exon-scaffold_60-1575043694:1173581..1173952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1165311..1173952 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17371	1.99606	0.962149	1.41975	30.38	20.4076	23.8105	18.666	7.30179	11.1248	9.03973	6.05694	4.33093	2.64113	4.97837	5.69606	9.72822	6.45771	1.9496	2.9846	8.47964	7.99859	4.40746	5.95912	10.9483	15.3145	4.79041	6.25108	2.93031	2.26674
Blast
[Close]
BLAST of TCONS_00071293 vs. Swiss-Prot (Human)
Match: OSCP1 (Protein OSCP1 OS=Homo sapiens GN=OSCP1 PE=1 SV=4)

HSP 1 Score: 351.288 bits (900), Expect = 5.413e-116
Identity = 191/373 (51.21%), Postives = 250/373 (67.02%), Query Frame = 1 
Query:   49 MSLKTLPVLFLNLGGEMMYILDQRLNAQNIPPGKAKK----------VMHDILATMLNKRFMEELFKPQDAYSRKAMRTVFDRLAHASIMRLNSASMDKLYDLMTMALKYQVSLSKQPQDVLMVTLNHMDTIREYSRGNSQILEQVDYVYSLINEAYSTMTPGEFQLIRQTLLNFFQDMHIRVSIFLKDKVQTPNGRFILPKGGKVPWGSETPGVIRFYNDQGEQANLSSFFVEGKYQLPDKPGSFEILGDRGTRLGVNMYTMARPXXXXXXXXXXXXXKPSIQSTKSEADDVNNTESAKXXXXXXXXXXXXXXKDS---KDFRLNLFDSD-AQEQVAEKQYAKVRHREVVVDATQRSQRS-EITQLMNEFSI 1122
            MS++TLP+LFLNLGGEM+YILDQRL AQNIP  KA+K          V++DI++TM N++FMEELFKPQ+ YS+KA+RTV++RLAHASIM+LN ASMDKLYDLMTMA KYQV L  +P+DVL+VT NH+DTI+ + R +  IL+QVD     + E Y  ++ GEFQLIRQTLL FFQD+HIRVS+FLKDKVQ  NGRF+LP  G VPWG+E PG+IR +N++GE+     F   G Y    K GSFE+ GDR  +LG NMY++ +PVET +S +       ++ S   E+   N     +              K S     FRLNLF +D  +EQ A  +  ++ +  + + ATQ  QRS E+ ++M EF I
Sbjct:    1 MSVRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARKDEWTEVDRKRVLNDIISTMFNRKFMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDTIKGFIRDSPTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLHIRVSMFLKDKVQNNNGRFVLPVSGPVPWGTEVPGLIRMFNNKGEEVKRIEFKHGGNYVPAPKEGSFELYGDRVLKLGTNMYSVNQPVETHVSGSSK-----NLASWTQESIAPNPLAKEELNFLARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIMGEFEI 368
The following BLAST results are available for this feature:
BLAST of TCONS_00071293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OSCP15.413e-11651.21Protein OSCP1 OS=Homo sapiens GN=OSCP1 PE=1 SV=4[more]
back to top