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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071292 ID=TCONS_00071292|Name=TCONS_00071292|organism=Clytia hemisphaerica|type=transcript|length=2545bp
cttttttgtggcacacccggtatgtTTAGTCTTTTAcgcaaacccctgta
actatgggcgagcaccccgttgttaagatgttggcttgaaataaaaaatg
ataccactcaaaacaaaagaaaaatcagcccgtactcgaaatcccgtaat
cttggtatacaagtttaagtctatactggcAGAACTTGGTATTTCCGAAT
ATTTTTTCGAGTGCAGCCTTTCCATACTCTgcaagttgtttgctgcaaac
aaaaaattctcgaaattttttgtcaatataaaaaagactttaaaattcta
aggacaaaacattaatttttgcactaagtgaaaaatgtgttgcagaaata
ttcattttttagctttttttgtgaaaccaGTCCGAAAAGCAATCAAAAAA
TAGGtagtctccatgacaaattgtcccaaaatcttttactaccagggtag
taaaatacctcttccaagaatctgggtggtggtatgtaaaaattcgtaaa
aatccttttacagctcatatatgtctgagattttactaccaaCCAACCCC
TGTATATAGGCATGATAAAACTTAAGACTACAGGATCTGAAAGTGCTGGA
ccgatttatttttgttttcagtggtttcacttttCATTTCCAACCAATAT
CTTCAACAGGGTGCTCATACAGTAATATTTGTAAAACTTTTCAATGCAaa
ccaattaaaaaaaacttcccAAGTTTCAGTTTTTTGCTGCCTTTCTTTGA
CAAATGTAGCTCTTGCATTAAATTCTCGCTTTCCACAGAGAATTAAAGAT
AGGAAAATGATTAATCTTTAGGATCACTGATTGAAAGAAATAAAGGATGG
CGATTATTATAGGGTGACGTTTCAATGGCCATGGGCCAGGGGCCTTGTTT
AATGTTGCAGtctcattaattttttaaatttgacattttagatttttgag
caaaacttttgaaccaatgaagtaaaattaaaaagtaatacacccattct
taagttaggctttcctctgaatgattccaaaacaattgttgaaaaatctt
ttctactgcctacaatatcaaatcaaagagggtaacttatttgtggcaca
cccagTAGAATTGGGAGCAGAGCTGAAGGTTGAAGATATCttaaataatg
ttaaaaatctatgccgTAGGGAAGGTTTTATATCCCTCTTGAAAAGCAtt
ttgcctgcggcgcaataaatttatttagaatttgcatgcaaaatttcttt
gatattttgctttgtgaaaGCCCCCACTTTGCTTCTAGAATTTACcgggg
gctattttccttagccccccccccctgaaaaatgctgggggatggacccc
tctgcacactgtgaatttcaatgaaattttaatATCGTGAACAGTTTATT
TAAAGTAGTTTAACCATGATCAGTAATGGATACACTTTGCATCTCTGCAT
CTTCCATTTCAGTATTAAAACATATCAGATGTAATCAAGCTTTGAATCCT
TACTGAGAGTATGTCTGGTATATACTATTTTGTGATTGTGGGGAAAGATG
ATAATCCCATATTTGAGGCTGAATTTACACAAGGAAAAACAACTGTCCTT
GAGCCTCAACTTAAAGGAAAAGATGATCATAGACACTTGAATCAGTTTAT
TTTACATGGAGCTTTAGATTTGGTTGAAGAAGTTATGTGGACAACCAATA
ATATGTACTTAAAGAACGTTGATAAATTCAATGAATGGCTTGTTTCTGCT
TTTGTAACAGCCAGTGGTGCTAAATTTATGATGCTTCATGATATACGGAA
TGATGATGgtatcaagaatttttttcaagaatgttATGAAATGTATGCTA
AATTGACAATGAATCCCTTTTACGAGTATAATACTCAAATAAAGTCAAGT
GTATTTGAACGAAAAGTTCAGACttttgggaaaaaatatttatctgTCTA
AAGTTAAAAATGCCACATATATACATATACGTAACTATTGATAGTTTTAA
TAAGTTGCATTTTTATCCTAGGATAATCACTCTTGTTTTCAATCTTATTC
GCTGTAACGAAACTGTCAAGGTATGAGTAGGTTTAATTAATGCTGTAGGA
CAACAGTGTTCCAGGGCAGACAaatatttaaagaaaatattttgaaatga
taTTAGGGTAAAATgactaaaaacaaaattttttgtctAATTTACCTTTT
ATTTGCATCGAAATCAAATTAGAATATAATTTTGTaagctttattttttt
tattgttttatttttggtattttggaatTCAACATGTGACAATGTTTTAT
TTGTTCACTATTTACCACCTGTTACCACAGATATTTAAACTGCTTTTACG
ACCCTGTATCTCTAAGGTCTTTATTTTGttaagttaaaggttttgttttt
aaataaaagtgatatcatttgcttactcatcaattttaattcacaagctt
tttcgcaCTAGATTGACACAGATGTAGAGCAAGAtgggtcagaaagagga
aaagaaaaacatttttttgcaaatatcAGCATTATAACAATAAGC Run BLAST on NCBI transcript from alignment at scaffold_60:1161287..1163831+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071292 ID=TCONS_00071292|Name=TCONS_00071292|organism=Clytia hemisphaerica|type=transcript|length=2545bp|location=Sequence derived from alignment at scaffold_60:1161287..1163831+ (Clytia hemisphaerica)
cttttttgtggcacacccggtatgtTTAGTCTTTTAcgcaaacccctgta
actatgggcgagcaccccgttgttaagatgttggcttgaaataaaaaatg
ataccactcaaaacaaaagaaaaatcagcccgtactcgaaatcccgtaat
cttggtatacaagtttaagtctatactggcAGAACTTGGTATTTCCGAAT
ATTTTTTCGAGTGCAGCCTTTCCATACTCTgcaagttgtttgctgcaaac
aaaaaattctcgaaattttttgtcaatataaaaaagactttaaaattcta
aggacaaaacattaatttttgcactaagtgaaaaatgtgttgcagaaata
ttcattttttagctttttttgtgaaaccaGTCCGAAAAGCAATCAAAAAA
TAGGtagtctccatgacaaattgtcccaaaatcttttactaccagggtag
taaaatacctcttccaagaatctgggtggtggtatgtaaaaattcgtaaa
aatccttttacagctcatatatgtctgagattttactaccaaCCAACCCC
TGTATATAGGCATGATAAAACTTAAGACTACAGGATCTGAAAGTGCTGGA
ccgatttatttttgttttcagtggtttcacttttCATTTCCAACCAATAT
CTTCAACAGGGTGCTCATACAGTAATATTTGTAAAACTTTTCAATGCAaa
ccaattaaaaaaaacttcccAAGTTTCAGTTTTTTGCTGCCTTTCTTTGA
CAAATGTAGCTCTTGCATTAAATTCTCGCTTTCCACAGAGAATTAAAGAT
AGGAAAATGATTAATCTTTAGGATCACTGATTGAAAGAAATAAAGGATGG
CGATTATTATAGGGTGACGTTTCAATGGCCATGGGCCAGGGGCCTTGTTT
AATGTTGCAGtctcattaattttttaaatttgacattttagatttttgag
caaaacttttgaaccaatgaagtaaaattaaaaagtaatacacccattct
taagttaggctttcctctgaatgattccaaaacaattgttgaaaaatctt
ttctactgcctacaatatcaaatcaaagagggtaacttatttgtggcaca
cccagTAGAATTGGGAGCAGAGCTGAAGGTTGAAGATATCttaaataatg
ttaaaaatctatgccgTAGGGAAGGTTTTATATCCCTCTTGAAAAGCAtt
ttgcctgcggcgcaataaatttatttagaatttgcatgcaaaatttcttt
gatattttgctttgtgaaaGCCCCCACTTTGCTTCTAGAATTTACcgggg
gctattttccttagccccccccccctgaaaaatgctgggggatggacccc
tctgcacactgtgaatttcaatgaaattttaatATCGTGAACAGTTTATT
TAAAGTAGTTTAACCATGATCAGTAATGGATACACTTTGCATCTCTGCAT
CTTCCATTTCAGTATTAAAACATATCAGATGTAATCAAGCTTTGAATCCT
TACTGAGAGTATGTCTGGTATATACTATTTTGTGATTGTGGGGAAAGATG
ATAATCCCATATTTGAGGCTGAATTTACACAAGGAAAAACAACTGTCCTT
GAGCCTCAACTTAAAGGAAAAGATGATCATAGACACTTGAATCAGTTTAT
TTTACATGGAGCTTTAGATTTGGTTGAAGAAGTTATGTGGACAACCAATA
ATATGTACTTAAAGAACGTTGATAAATTCAATGAATGGCTTGTTTCTGCT
TTTGTAACAGCCAGTGGTGCTAAATTTATGATGCTTCATGATATACGGAA
TGATGATGgtatcaagaatttttttcaagaatgttATGAAATGTATGCTA
AATTGACAATGAATCCCTTTTACGAGTATAATACTCAAATAAAGTCAAGT
GTATTTGAACGAAAAGTTCAGACttttgggaaaaaatatttatctgTCTA
AAGTTAAAAATGCCACATATATACATATACGTAACTATTGATAGTTTTAA
TAAGTTGCATTTTTATCCTAGGATAATCACTCTTGTTTTCAATCTTATTC
GCTGTAACGAAACTGTCAAGGTATGAGTAGGTTTAATTAATGCTGTAGGA
CAACAGTGTTCCAGGGCAGACAaatatttaaagaaaatattttgaaatga
taTTAGGGTAAAATgactaaaaacaaaattttttgtctAATTTACCTTTT
ATTTGCATCGAAATCAAATTAGAATATAATTTTGTaagctttattttttt
tattgttttatttttggtattttggaatTCAACATGTGACAATGTTTTAT
TTGTTCACTATTTACCACCTGTTACCACAGATATTTAAACTGCTTTTACG
ACCCTGTATCTCTAAGGTCTTTATTTTGttaagttaaaggttttgttttt
aaataaaagtgatatcatttgcttactcatcaattttaattcacaagctt
tttcgcaCTAGATTGACACAGATGTAGAGCAAGAtgggtcagaaagagga
aaagaaaaacatttttttgcaaatatcAGCATTATAACAATAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071292-exon-scaffold_60-1491911889:1161287..1163831 | TCONS_00071292-exon-scaffold_60-1491911889:1161287..1163831 | Clytia hemisphaerica | exon |
| TCONS_00071292-exon-scaffold_60-1510915933:1161287..1163831 | TCONS_00071292-exon-scaffold_60-1510915933:1161287..1163831 | Clytia hemisphaerica | exon |
| TCONS_00071292-exon-scaffold_60-1575043694:1161287..1163831 | TCONS_00071292-exon-scaffold_60-1575043694:1161287..1163831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1161287..1163831 + |
Blast
BLAST of TCONS_00071292 vs. Swiss-Prot (Human)
Match: TPC2B (Trafficking protein particle complex subunit 2B OS=Homo sapiens GN=TRAPPC2B PE=1 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 1.408e-57 Identity = 92/144 (63.89%), Postives = 109/144 (75.69%), Query Frame = 2
Query: 1511 MSGIYYFVIVGKDDNPIFEAEFTQGKTTVLEPQLKGKDDHRHLNQFILHGALDLVEEVMWTTNNMYLKNVDKFNEWLVSAFVTASGAKFMMLHDIRNDDGIKNFFQECYEMYAKLTMNPFYEYNTQIKSSVFERKVQTFGKKYL 1942
MSG +YFVIVG DNP+FE EF + + KDDHRHLNQFI H ALDLV+E MW +NNMYLK VDKFNEW VSAFVTA +F+MLHDIR +DGIKNFF + Y++Y K +MNPFYE N+ I+SS F+RKVQ GKK+L
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAG------KAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHL 138
The following BLAST results are available for this feature:
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