TCONS_00071290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071290
Unique NameTCONS_00071290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071290 ID=TCONS_00071290|Name=TCONS_00071290|organism=Clytia hemisphaerica|type=transcript|length=1215bp
ggcaaaagttttcaccaaaattcgaaatttccaaggggagagaagaaaat
gtatgaatttccaaggcaattgaattaaaaaaggcaaaaaagagtagaat
ttccgatgcatttgcaaaagtacatggatttttattgGATTTACCGACCa
ccactgaaaaagaaaaattatttctgaggctagaaaaaatctaaaagata
aaaaagattcACCATACCAGCTAAACACTCAAAAATGTATTTTGCAAGTT
GCCTCagagaagaaagtgaaaaaaaggtaaaaggaAGGTTCTATTTCAGC
ATTTTCAAGAACGTATGACCTCATTATTTTGACAATTACCTCATCAACGA
TGTCAAATTTTCACTAATAATGCTAATTTATATTTGGTGCACACTTACAA
AATTACAACTCAATCggataaaaattcctaaagTTTAAAACTTTCATTTA
GATGCACCAAGATGCATGaattgaaaacataacaataaaGTAGGCGTGTA
TGAGACTGCTGAGAGTAATTTACTATGGAAATTCAACAAATTCTTTTGTA
AAGGCTCTTTCTTTCATTCCAGTACCCACTCATGTACAGCAGTGATAATG
AAAAAGAAGGAAAGATCTTTAACTGCATTCAAAGAGCCCATCAAAATaca
ctTGAAGTTTATGCACCAACCATGATGGTCATGTTGCTTGGAGGTATCAA
ACACCCTATGTTATGCGCTGGATCTGGTGCTGTTTGGCTTTTCTCCAGGC
TGGTTTATGCTCATGGCTATTACACTGGAGATCCAGCTAAACGCAGCCGT
GGAGCTTTCGGATATCTTGGTTTGTTTACCATGTATGGATGCACTATTTC
CCTCGGTCTCTCTATGCTTGGTATGATCTAAGTACGAAATCTTAAAACTT
GTTCGGTAGAACACTCACTAAGGCTACCTTTACACCGAACAATTTTGGCT
TTTTGAATTGAGCCGATATTCAGTTTATGAGTTGAATACAATTCCAACAc
tggattttttttaataagatgtgacttttttatgttcaattttagttttt
tttttttacttgcaCAATTTAGAttgtagattttgaatatcATACATTCA
TTTGATGATTTATTAGATAATAAACCAAAACATAACAATAGTTTTTCCTG
TCATGAAACTCTATTTTTCGTATACCCAAACATTTTACTTAGAGTTTAAT
CTCCACAATCATTAC
Run BLAST on NCBI

protein sequence of TCONS_00071290-protein

>TCONS_00071290-protein ID=TCONS_00071290-protein|Name=TCONS_00071290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MYSSDNEKEGKIFNCIQRAHQNTLEVYAPTMMVMLLGGIKHPMLCAGSGA
VWLFSRLVYAHGYYTGDPAKRSRGAFGYLGLFTMYGCTISLGLSMLGMI
Run BLAST on NCBI

transcript from alignment at scaffold_60:1127599..1131036+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071290 ID=TCONS_00071290|Name=TCONS_00071290|organism=Clytia hemisphaerica|type=transcript|length=3438bp|location=Sequence derived from alignment at scaffold_60:1127599..1131036+ (Clytia hemisphaerica)
ggcaaaagttttcaccaaaattcgaaatttccaaggggagagaagaaaat
gtatgaatttccaaggcaattgaattaaaaaaggcaaaaaagagtagaat
ttccgatgcatttgcaaaagtacatggatttttattgGATTTACCGACCa
ccactgaaaaagaaaaattatttctgaggctagaaaaaatctaaaagata
aaaaagattcACCATACCAGCTAAACACTCAAAAATGTATTTTGCAAGTT
GCCTCagagaagaaagtgaaaaaaaggtaaaaggaAGGTTCTATTTCAGC
ATTTTCAAGAACGTATGACCTCATTATTTTGACAATTACCTCATCAACGA
TGTCAAATTTTCACTAATAATGCTAATTTATATTTGGTGCACACTTACAA
AATTACAACTCAATCggataaaaattcctaaagTTTAAAACTTTCATTTA
GATGCACCAAGATGCATGaattgaaaacataacaataaaGTAGGCGTGTA
TGAGACTGCTGAGAGTAATTTACTATGGAAATTCAACAAATTCTTTTGTA
AAGGCTCTTTCTTTCATTCCAGTACCCACTCATGTACAGCAGTGATAATG
AAAAAGAAGGAAAGATCTTTAACTGCATTCAAAGAGCCCATCAAAATacg
taagaatttttttttaatttgttttgtttcataTTTTAATAATTAATAAC
ATTTGTTGAAGACCAAAATCTCTTGATCAGAAAACCATTAATCTATTAAA
AGAAGCATAGaatgcagaggggtccagcaTTTTTCAGGAGGGAGGGCTTA
GGATGGAAAAGAGCCCCTGCTAAAGTTTGAAAACATAGCCCCCATCTTCA
AAAAGCCAAATATGGAAGAAATTTTGCTCGGAAATTCTAAATAAATTCTT
TGTGCCGCTGGcaaatatgtttttaaaaagggtcaaaaccttccccacag
catgatttttaacataatttagaATATTTGTGGCCTATCACCTCTGCTTC
CAGTTCTATTACTCAACACTCAGCCCCTAGCATGCTAGCCACtagaattt
tgtaaaaagtacAGCCCacaatcaagaaaaaattgtttagcccccccccc
taagctcaggggAGGGTACATTCTCTATAAAGGATCCtttacagtttttt
ttatttctagactTGAAGTTTATGCACCAACCATGATGGTCATGTTGCTT
GGAGGTATCAAACACCCTGTAAGTAGATGTACTTTTCTACAGTCAATATC
CCAAAGTATGAAGGTTTCTGTGGGAAAAGTTTGTTAAAGCAAGAGGTTTC
AGGCTTATTGAAATGTTGGATTTGATAGCCGTTTAGGCAATCACAATGGT
CGAACTAGCTGAAAAGGTCCAatccctgaagagagtagtatataagaggc
ccccccagcggcacccctaatcacgccatcacgcaaaaaaattttctcca
tcacgcatcacgaaaatcgctaacatttgtcatcacgcaaaaaatagccc
aaatcaagCATCACGGCTcgaatttttgccctatcacgcatcacgccaaa
aaaatctctaatcatgccatcacgcaagaaaaaagtcccaatcacgcaat
cacgcaaaccgctggggggggcctcaTATAAGACACCATGAAAATTAGAT
AACGAATATAGATGGTCCGCAATAGCTTAAAATCTGTCATATTTTGTAGT
ATTTTTGTCGCATCGTCATCAGTAGCCGACCGAGTTTTACATAATGATTT
AGGCTAACAAATGTTGCAACATGGTTACAAGGTTTGTAGGGTTTCCCTAC
CTAGATCACGAGATACTCTATTTAGGTTTGAGGTTTTGTTGACTCAGCAA
AAGTATTGTGTTCGTTCAGCAAAATCATTTAAAAGCTTTGGATgggtttt
ttctgtttttattttgggatagaatttttagaaaaaaataagatttattA
ATCAAATGGTTCAATATTATCTCTTAGATGTTATGCGCTGGATCTGGTGC
TGTTTGGCTTTTCTCCAGGCTGGTTTATGCTCATGGCTATTACACTGGAG
GttagttttttcaaacattAATAAAAAGCTAATAACACTACCAACCTTTA
AAATATGAGGAGGATTGATTAAATTTTATGAAGGAGGATTACCTTAagga
aacttattttggcgggaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNgtacgagttattatgtgattacgagctaatcgcacaatggctttcact
actttttcccagttatgaaagtaaattacagaaattacactgaaagtttt
atatttttctcttctctctatgtttttcttttattgttgcttatagattt
tctttctcacaaaatgaatttcgaatgcaattaaaacgttcgatgaaaaa
aaaatgtaagaaaaaacattaaaatcaattttgNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNgattaacgattaattgctctctacaggatgc
aattaacgattaattgctctctttgagggcgcgccaaataagaaaaaata
acccatcgtgcgattaagcCTAAAAATTCGCGTAATTaagtacacgcgaa
aatttagtacccgcaaaaatatatacactttataacaaaaattatttcag
atCCAACGTAAATTCGTATGAATTTTTCACAGACGTTTTACTTTCATATT
TAGATCCAGCTAAACGCAGCCGTGGAGCTTTCGGATATCTTGGTTTGTTT
ACCATGTATGGATGCACTATTTCCCTCGGTCTCTCTATGCTTGGTATGAT
CTAAGTACGAAATCTTAAAACTTGTTCGGTAGAACACTCACTAAGGCTAC
CTTTACACCGAACAATTTTGGCTTTTTGAATTGAGCCGATATTCAGTTTA
TGAGTTGAATACAATTCCAACActggattttttttaataagatgtgactt
ttttatgttcaattttagttttttttttttacttgcaCAATTTAGAttgt
agattttgaatatcATACATTCATTTGATGATTTATTAGATAATAAACCA
AAACATAACAATAGTTTTTCCTGTCATGAAACTCTATTTTTCGTATACCC
AAACATTTTACTTAGAGTTTAATCTCCACAATCATTAC

Coding sequence (CDS) from alignment at scaffold_60:1127599..1131036+

>TCONS_00071290 ID=TCONS_00071290|Name=TCONS_00071290|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_60:1127599..1131036+ (Clytia hemisphaerica)
ATGTACAGCAGTGATAATGAAAAAGAAGGAAAGATCTTTAACTGCATTCA
AAGAGCCCATCAAAATacactTGAAGTTTATGCACCAACCATGATGGTCA
TGTTGCTTGGAGGTATCAAACACCCTATGTTATGCGCTGGATCTGGTGCT
GTTTGGCTTTTCTCCAGGCTGGTTTATGCTCATGGCTATTACACTGGAGA
TCCAGCTAAACGCAGCCGTGGAGCTTTCGGATATCTTGGTTTGTTTACCA
TGTATGGATGCACTATTTCCCTCGGTCTCTCTATGCTTGGTATGATCTAA
ATGTACAGCAGTGATAATGAAAAAGAAGGAAAGATCTTTAACTGCATTCA
AAGAGCCCATCAAAATacactTGAAGTTTATGCACCAACCATGATGGTCA
TGTTGCTTGGAGGTATCAAACACCCTATGTTATGCGCTGGATCTGGTGCT
GTTTGGCTTTTCTCCAGGCTGGTTTATGCTCATGGCTATTACACTGGAGA
TCCAGCTAAACGCAGCCGTGGAGCTTTCGGATATCTTGGTTTGTTTACCA
TGTATGGATGCACTATTTCCCTCGGTCTCTCTATGCTTGGTATGATCTAA
ATGTACAGCAGTGATAATGAAAAAGAAGGAAAGATCTTTAACTGCATTCA
AAGAGCCCATCAAAATacactTGAAGTTTATGCACCAACCATGATGGTCA
TGTTGCTTGGAGGTATCAAACACCCTATGTTATGCGCTGGATCTGGTGCT
GTTTGGCTTTTCTCCAGGCTGGTTTATGCTCATGGCTATTACACTGGAGA
TCCAGCTAAACGCAGCCGTGGAGCTTTCGGATATCTTGGTTTGTTTACCA
TGTATGGATGCACTATTTCCCTCGGTCTCTCTATGCTTGGTATGATCTAA
ATGTACAGCAGTGATAATGAAAAAGAAGGAAAGATCTTTAACTGCATTCA
AAGAGCCCATCAAAATacactTGAAGTTTATGCACCAACCATGATGGTCA
TGTTGCTTGGAGGTATCAAACACCCTATGTTATGCGCTGGATCTGGTGCT
GTTTGGCTTTTCTCCAGGCTGGTTTATGCTCATGGCTATTACACTGGAGA
TCCAGCTAAACGCAGCCGTGGAGCTTTCGGATATCTTGGTTTGTTTACCA
TGTATGGATGCACTATTTCCCTCGGTCTCTCTATGCTTGGTATGATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044305XLOC_044305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071290-exon-scaffold_60-1491911889:1127599..1128247TCONS_00071290-exon-scaffold_60-1491911889:1127599..1128247Clytia hemisphaericaexon
TCONS_00071290-exon-scaffold_60-1510915933:1127599..1128247TCONS_00071290-exon-scaffold_60-1510915933:1127599..1128247Clytia hemisphaericaexon
TCONS_00071290-exon-scaffold_60-1575043694:1127599..1128247TCONS_00071290-exon-scaffold_60-1575043694:1127599..1128247Clytia hemisphaericaexon
TCONS_00071290-exon-scaffold_60-1491911889:1128759..1128816TCONS_00071290-exon-scaffold_60-1491911889:1128759..1128816Clytia hemisphaericaexon
TCONS_00071290-exon-scaffold_60-1510915933:1128759..1128816TCONS_00071290-exon-scaffold_60-1510915933:1128759..1128816Clytia hemisphaericaexon
TCONS_00071290-exon-scaffold_60-1575043694:1128759..1128816TCONS_00071290-exon-scaffold_60-1575043694:1128759..1128816Clytia hemisphaericaexon
TCONS_00071290-exon-scaffold_60-1491911889:1129576..1129648TCONS_00071290-exon-scaffold_60-1491911889:1129576..1129648Clytia hemisphaericaexon
TCONS_00071290-exon-scaffold_60-1510915933:1129576..1129648TCONS_00071290-exon-scaffold_60-1510915933:1129576..1129648Clytia hemisphaericaexon
TCONS_00071290-exon-scaffold_60-1575043694:1129576..1129648TCONS_00071290-exon-scaffold_60-1575043694:1129576..1129648Clytia hemisphaericaexon
TCONS_00071290-exon-scaffold_60-1491911889:1130602..1131036TCONS_00071290-exon-scaffold_60-1491911889:1130602..1131036Clytia hemisphaericaexon
TCONS_00071290-exon-scaffold_60-1510915933:1130602..1131036TCONS_00071290-exon-scaffold_60-1510915933:1130602..1131036Clytia hemisphaericaexon
TCONS_00071290-exon-scaffold_60-1575043694:1130602..1131036TCONS_00071290-exon-scaffold_60-1575043694:1130602..1131036Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071290-proteinTCONS_00071290-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1127599..1131036 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.3681	41.1238	8.44533	5.20549	28.9573	17.7422	30.4344	31.2679	63.4768	57.8325	86.3193	32.8158	46.3865	43.3569	35.4413	37.4398	33.3477	26.6319	16.5846	31.8441	14.8659	13.5794	36.0538	34.325	21.3299	48.6273	59.9046	74.1993	49.7454	38.1193
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001129Membr-assoc_MAPEG
IPR023352MAPEG-like_dom
Blast
[Close]
BLAST of TCONS_00071290 vs. Swiss-Prot (Human)
Match: MGST3 (Microsomal glutathione S-transferase 3 OS=Homo sapiens GN=MGST3 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.730e-31
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 3 
Query:  570 QYPLMYSSDNEKEGKIFNCIQRAHQNTLEVYAPTMMVMLLGGIKHPMLCAGSGAVWLFSRLVYAHGYYTGDPAKRSRGAFGYLGLFTMYGCTISLGLSMLGMI 878
            +YP+MYS+D E  G IFNCIQRAHQNTLEVY P +  + +GG+ HP + +G G  W+  R++YA+GYYTG+P+KRSRGA G + L  + G T+      LG +
Sbjct:   39 EYPIMYSTDPE-NGHIFNCIQRAHQNTLEVYPPFLFFLAVGGVYHPRIASGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSIALLGLVGTTVCSAFQHLGWV 140
The following BLAST results are available for this feature:
BLAST of TCONS_00071290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MGST31.730e-3151.46Microsomal glutathione S-transferase 3 OS=Homo sap... [more]
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