TCONS_00071288 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071288
Unique Name	TCONS_00071288
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2028

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_60:1090986..1098447+

transcript sequence

>TCONS_00071288 ID=TCONS_00071288|Name=TCONS_00071288|organism=Clytia hemisphaerica|type=transcript|length=2028bp
AGAGAATgaaagagaaataaaaaatcagtaagaaagaaaaatattttgaa
tttaacaCAAACAAGATGTTGGCCAACATGAATAAAATGATGATGGAAAA
AGTCAAATCTTTTCAACAACAATTAAGGTCACGTGATGAAAGAATCGTTG
CCCTGGAAACAGAAAATGCTATGCTTTATCTAAAGTTAGCACAGTGTCAA
TGTCAGTTGAGGGATAGTAAACAAGAAGCCACCTATCATGCTGAAATCAA
AAGAGAAGATGAAAAACTACGTTATGAGCTTCGAGAAAAACTATTTGCAG
CGCAAGATGATCTTACAAAATTGAGGAATCAATTCAATACCACTCGGGAA
CAAATAAAGCGGCTACCATTAGAACTAAAGAATTCGATCagtttcgatga
cgtcatcaaacagGCTGGTGGATCATCCATTATGAAGAACCTGAGTACAG
AGCATACTCTTTCTACAGAACAACTGCAAGATAAATTGCTTCAAGCAGAG
AGGGCTCGAGACGAAGCCATGAGGAAAACTAATATGGAAAGATTGAGGCG
CCGAACCTTACATAATACACTCGTCGAATTAAGAGGGAACATACGAGTCC
ATTGTCGTGTTCGTCCCTTACTGGCAGCTTTGGATTCGAATGGTGACGGC
AGATTACTGGGGCTACCGAAAACACAATCTGAAAAGATCGTTGAAGTCAT
GGACGAAGAGACGTTACTGTTCAACCAACTTAACGCGAATAATAGTTCGA
GCAATAAAGCCAAGACTTTCGAATACGAGCGTGTGTATAAACCGAACGAC
GACCAGACGATGATTTTTGCTGATGTGGCACCTTTGCTGACATCGCTTCT
GGATGGTTACAACGTATGTATTATGGCGTACGGGCAGACAGGTAGCGGTA
AAACACATACCATGGTTGGTGACCATTCGTTATACAACGATCTCCCTGAC
AACGAAGAAGAGTACAAAGAGGGAATCATTCCAAGATCCGCTAAAGAAAT
TATCAGaCTAATGAAAGAACGAGGGAGTGCTACCGAAAGTTATTCATTAG
AAATTTCTGTTTTTGAAGTCTACAACAACGAAATTAACGACCTCTTAGCT
AGAGATGATGCGaaaaccaTTAAACATGCAGTGTTCAGTGCCAACGACGG
ATCTCAAGAAATCCCTTCTCTTGTCTCACAGTAAGTTATCCAATCGTTTT
TATTATATCGTTTCTGGGAATGGTTTCAACAGGTCTAACTCTCTTACCAG
TATTGTACTTCCAATAACTTATCTGGGAGCTTACAcgaaagcaaaatttt
aaaaggcTATAATTTCACACATGAAAAATACATAATACATTCCTGATGTC
TTGAACATTTAGGTcaaatttatgtttttataaacaCCAATGAACCACAT
ACTCAATCAAAAAGTATCCAAcaaaattcatcatttttgcagatttgata
AGAAAATGCTCTCGATTTTAATCAATATATGATTAGCAATCGTCCGTGGA
CTGGGGACGACTCAATCCTTTCATAAAGTAAAACGGTGGGAAACGTTTTG
CGAAAAAGAACATGTAGTCTCTCTCGTTTCGTTTCATTTTAGTGCAAAAA
CAATCCGGTTTTTCAAGGAACGCTGGTGGAGGTGTTTCACCGATGTCTTT
TAAGACTTctaatattttgtcaaatttttggatAGTGCCATCCACATCTG
TCGATGTGCTGTTGTTTAAGCAAAATGTCACGACAGCGTCATTAAGTTCG
CGAAACAACATCAAATCTGTTTTGAACTTTTCTTTATCTTGTTTCCCGAT
AATTTCATCTAATCGTTTCGAGAAATGATTATACAGGACCGCGTCGAAGT
AATTCCAGCCGCGTATACTTTCGGCCGTCGCGTTTGAAATGGCAAATGAT
TCATTCTGCAGGTTATGGTTGACGTGTTTCTTCATGTAGACTATATCCAT
GAAGTCCCAACACATGAGCTTCTTCAACAGTAATAAACTTTCATCATATT
TCTCAGTGATCATAACCAAATGAAACGC

Run BLAST on NCBI

transcript from alignment at scaffold_60:1090986..1098447+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071288 ID=TCONS_00071288|Name=TCONS_00071288|organism=Clytia hemisphaerica|type=transcript|length=7462bp|location=Sequence derived from alignment at scaffold_60:1090986..1098447+ (Clytia hemisphaerica)
AGAGAATgaaagagaaataaaaaatcagtaagaaagaaaaatattttgaa
tttaacaCAAACAAGATGTTGGCCAACATGAATAAAATGATGATGGAAAA
AGTCAAATCTTTTCAACAACAATTAAGGGTATGTACAACTTCTTCTCCGT
GCAGTGTATTAAGGCCTTATTAAATCCTTTTGATTCATACCATTGAGTTA
AGGGTAATGGTATTTTCTTACCATTCTTTTTTTAGATGCAAGTCTTTTCT
AGCTTTTACCGAATACATTGCTCCTCAGCTGTTTTCACTGCTGACTTCTG
TCTATGGTCCCTTTCTAGGGGAATCAAACTTTGTCAAACTTTTTCTAACC
TTGTTCGCCTATTTTTCAGTCACGTGATGAAAGAATCGTTGCCCTGGAAA
CAGAAAATGCTATGCTTTATCTAAAGTTAGCACAGGTAAATTAAACAGTT
TTTTCCTTAGGCTCATTCCTCCTTTTATTTGCAACtggctcaaattttaa
actcacTAGATCAAGAAAAACTCATTAGCTCGCTTGATACAGGAAGAACA
GGCGGGGTGTGGCGGTTGGCGTTCGAGAGGAGATGGTATCAGCTTCTCCG
AGTACCTTTACacataggcttctgctcatcctctagcgaaaaaggtttct
tatagaggaagtatatctatagaggtctgcgattcagactacttCACACA
CTGTTGGCAGTTTATTCCATATTTGAGTCTTTGAGATTTTGATCCTCTTT
TTAACTTCAATTTTTAGTGTCAATGTCAGTTGAGGGATAGTAAACAAGAA
GCCACCTATCATGCTGAAATCAAAAGAGAAGATGAAAAACTACGTTATGA
GCTTCGAGAAAAACTATTTGCAGCGCAAGATGATCTTACAGTGATTTTTT
TCGCAATTACATCCTATATTGTTAGAAGCGGCGAAATTAttcttccaaaa
tttgcagttcCCTGTTATGCAACCATTCATCAAGTTTTTAATGAGGAGGG
ACTTACAAATTTACTATGGCACTAGAATAGCGTATCGTTGCTCACAACGA
ATACCTTACGTTTACCAACTTTCTGCCAACTTTAATTCAAACTTCGAAGG
GCCGGCAGAAATATAGCCTATattagacgtcacccgcgttttttctacgc
aatgaAGAATCCTGgcttttagtgaggtgctcgctagcaGAAATATGAGT
CGTCTAAATCAGAACTTACGCAGACTCACTATTATTGATTCGATTTCAGA
CCCTGATTTTGGTTTAACAATAATAATCACCACCTTTCTCTTTGACTGCA
GAATTGATAATTTTTCCAAACGCTTCCTGAATACACTTCCACTTTCCATT
TTCTCTGTTTAGAAATTGAGGAATCAATTCAATACCACTCGGGAACAAAT
AAAGCGGCTACCATTAGAACTAAAGAATTCGATCagtttcgatgacgtca
tcaaacagGCTGGTGGATCATCCATTATGAAGAACCTGAGTACAGAGCAT
ACTCTTTCTACAGAACGTACGTTGGTTACTTATTATTCGTTAATTTGAAA
CTTATTTTCTAACTTACAGGTGACAATAAAGGGGTTACGTTGAATATAAT
ActaaataactctaatttgcAAGAGTGAATTAATGGcaaattatttattt
tcaatatcaatAAGCGACATGAGTCCATCCAATATCATTAGGATGATGAC
TTTTAACAAGTGTCGTTAAAAATCTATCATTAACTCTCCCATAATCGATT
GTAGCTCAATTGTCTTGTTGCATCGGTGGAAACAATCTCATGGCTACCTA
AAGTGACAAGCCTAAAATATAACTTGTTATCGGCGGTAAATGGTTGCAGT
GCCCTCCCAACGGCCAGACGATTCTTCAGCGGAAAACAAGGGGCGCTAAA
ATGCTCTTCACTAACTTTGGCACTTCTTTCATATTCTCAAATCACAAAAT
GACAGTTTCTTTAGCCAAAATAAGATTTATTATTATCACAAGGTGGCGCT
TCCTCCACTCGcatatttttagactttttcctAATATTACGCCGTAAAAT
GCTACGATGTTTTGCCTTGTTAAAGTGAAAATGCTACTGGAAGATTACCT
TTTGCGGCCTACCATTTAGATATTTCACGAAAACGTAACGACGTAACTTT
TTTTGAGTTCTAGCAATTTCATTGAAAGATACCAATTAAATTTAGAAGTC
CTATCTAAAAACATGCTTTTCAAATAGACTTTTTATTCCTTTCAGAACTG
CAAGATAAATTGCTTCAAGCAGAGAGGGCTCGAGACGAAGCCATGAGGAA
AACTAATATGGAAAGATTGAGGCGCCGAACCTTACATAATACACTCGTCG
TAAGCATTATTACATTACTAAGTTCATTCGAACCAAAAAATAATACTAGA
AAATTTGTCAATGTTGTATTGAAATTACTAGGTTTTCAATAGACTTAATT
CGTTTCAAAACGAGCACGAGATAATATTAGTTTTTAAAACTATTCTTGTG
CTTTATTTAGTCTTGATACCGTACCCTACTTTGTCCGATAACGTTCGTAC
ACGGTTAGTTTTTATCCTGAATCAGACTCCCTTATCAATCAATcacattt
cattttttaaatgaccACTAAAAACAATTGCCCCATATAATAGACTGAAT
TGATTCGTGGACTAACTTTTTTAaccgttttcatttttctagtgTTTGAC
ATAAATTCAGATTTCAAATCTTTTGGTCAAAATTAGCCATGGTCGCGAGA
ATTAAGTCTGTCCCATCTAAGGTACTTCAACAAGACCTCCGTACAGAACT
AAAACAATTAGCTAATGACGGTCCTgccaaattttgatttttatagcAAT
GTACAAAAAACAACTGAACTGACGAAAGAATATATTGGGAGGAGGAGTTG
AATATGAACTTTTTTCCAAGTACACtactcgttttttataagaacaaact
acataagaacaaaAGTATTAAGAAAAGGCTAagaccattttaaggctttg
cgaacTCACAACACCCTATTtttttaggaaattgcacaaaaataccaaaa
gttttggatgttcttatgataATTAACGTGTAGTCTTCTTCGAACTAGTT
ACATTAAACTTTTATTCATTAAAGCCTTCGTTTTTTCTTTCACTATGCAA
AAGATTGATCATTAAATATAGTATTGACCATCCCACGACAAACTTTGGtc
agtaccgtcaactgctctaatatGGGACGATTGGTGGAAAcattgcatat
ctggtctgtattttcacttactgtaaaatcgaaagagaaatcgtgtattt
ttaaatacgccgttccttaactcaaatcaaatgactttggaggttcggtg
aaatggtggccgaattgccgtcccatgttttgtcagatagtcccaagtta
gagcagttgacggtactgcTTTTGATCTGCAGTTGGTTTGATCTCTAAGG
AGTTTTAATTTCTCAATGCCAATTCAGGAATTAAGAGGGAACATACGAGT
CCATTGTCGTGTTCGTCCCTTACTGGCAGCTTTGGATTCGAATGGTGACG
GCAGATTACTGGGGCTACCGAAAACACAATCTGAAAAGATCGTTGAAGTC
ATGGACGAAGAGACGTTACTGTTCAACCAACTTAACGCGAATAATAGTTC
GAGCAATAAAGCCAAGACTTTCGAATACGAGCGTGTGTATAAACCGAACG
ACGACCAGACGATGATTTTTGCTGATGTGGCACCTTTGCTGACATCGCTT
CTGGATGGGTATTTATTTCTTCAATTAACCTGTCAAACCTTCAAGTGCGT
GGAGGCTGGGTTAGAGTTTACCAGAATTAAATGCTGTTAAGTTTTTCATT
GTCTACGAGAAAGTTGAAGTCAACCCTTCCTAAACTCTTACCAAGTCTTC
TCGCAGTTTGATTGGTTTATTCATGATATAAGCCGATGCAATGGCTCAAT
TCTTAGATTTCATAATAtgaaatcattaaattttaccATACTGGTTTTTT
CTACCCAGTACGTCACTTGTGACTAATCAGCTGTTGTAAAAGTGACGTAA
TCAGAACTGTAGAACTGCATATGAAAGTTTCAATATTCAAGATGCTCCTA
CCTATTTCTACGAATAAACGCCCCGTTTTTGGGagaggcgtttattcgaa
gtaataccgTTTTCCAAAAAAGGGGAGCTAAGGATATATGACGTAAACAA
ATcctgaaaaaggttttttttaagaagtctGATTTTGAATAACCTGTCAA
GGAAGAAGAATAGCGCATTTTATATATCCTCAGCAAGTCATGAACACTGT
TTGTTGAGATAGATCAATCGAGTCAGATATCGCAATCTGAGATTACTTGA
TGTCTATGACcttaaatagttttttttcgttagttcgttcgtccgtccgt
ccgtccgtccgtctgtccgttcggctcttgccagcttttctcgggattgg
ctcattagttttttctgattttttgcacagtgatgcgaaatggtgattcc
caaaaagtgacggagcccgattttcgaaaaaaaattttttgggccaaaag
TGCTTAAAATgggtttttctgattttatgcaTAAAGATGGAGgtgttctc
taaaaagtggctgaagcagttttttttggaaattttttttttggccgtaa
aaatcggattttcttatttagaGAAATTCCCATATGtcttttttagggaa
aaagagcatttctcgggattggctttatattttttttctgattttttgca
cagtaatgtaaaatggtaatttttataatctgatggagcctgattttcaa
aaataacttttttgggtaaatttgggctaaaaagtccctaaaaatggggt
tttctggactaatgctaaaatatttattcacccTAGTATCTACGACTATA
AGTCATACGACTTTAACCTGCTTTAACTATACTTCACAGGTCGATATTAA
TTTGAGccgtgatactcacggtaatctattcaagctgctcgctacacttt
tttactctcttgctatttgtcctacttttatctgattctcGTCattaggt
ccattcagcatgttgcttgttaaccTTAGGTTGATTACTTGTTTTCACCA
CCTCCTTATTACAATAACGGGATCGATCGATACAACACAGTTCTTCATAA
TTTTgaacctctttaactcgaatattTAGTTCCCCGTGCGTTTTCGAGTT
ATGGGGACTCTACGAACTAtaataaaatacatttttacTTTCCTCTCAGT
TACAACGTATGTATTATGGCGTACGGGCAGACAGGTAGCGGTAAAACACA
TACCATGGTTGGTGACCATTCGTTATACAACGATCTCCCTGACAACGAAG
AAGAGTACAAAGAGGGAATCATTCCAAGATCCGCTAAAGAAATTATCAGG
TTTCAATTGATGAAATTATATTAAACTCTCTAATGACAGATTACTCGAAA
GAAAATGGATACTTTGAAGATAGTGGACAGAGTTTTGGTGCCTAAGTCAA
GATTTTTCCTATCAGAAACACACCACCCATTTTGATGATTAGTTTTCTGA
GGTGCCAAACACCCGGATTTTCCGGTGTTTTGCGACAGTAAAAATTACAT
AACCTTAATCATGAAAGCTGGACACTTCTAAGTAGAGACAATCCCCTGAA
ACTTGAATCCTGAAAGTCGACTGTATGCGTAGAGTCGTTTTGATAGTATG
TTATCTATGATCAGAGCGCAACGTGGAAGGAGGAGGTTTCGAGAAAAGCC
TGTTTAGCAGTGCTGACGTTTTATAGAGAATACGATGATATTCACTTTTC
TCTTGATCTTAATTCTTAAAAATCCTTAAATTTGATTGTTACCTCTTTTT
ATTATTGACAAGGgactaattttcaattttacagaCTAATGAAAGAACGA
GGGAGTGCTACCGAAAGTTATTCATTAGAAATTTCTGTTTTTGAAGTCTA
CAACAACGAAATTAACGACCTCTTAGCTAGAGATGATGCGGTAAgttttt
taacaatatttttcaggaaaatgtcCAGTTATGGAGTTCTGATAATTTCT
GATAATTCTACGAGGaataagtttgaaaattgaacaaaaaatattctgTT
TGAAttcgaaaattgacaaaaggcTTGTTCAAACTTCAGCGTCGTTTGAA
ATTACCAGAGAAAGATGACATATTTATCTTGCGTAACAACGCCAGAAATT
GCTCAGTCGGTATCggctttttatttttgtgtagATGATTCAAATTAATA
AGTGTTTACAAAATCCAGAATTAAGACATGATAGTACCAAAATGATACAG
CTAGCAGTCCATTTGCTAAAAACTTCATGAAAGGAGATTGGGTTCGAGTT
CAAAGTGGTTGAACATGACGTCAAATGTCTGAAGTCGTTCCTTTGACATA
ATCACAGATACCGATATTTTACGTCACTTGCCCTGTTGAACTCAGAACCA
ATCACATTCAGTATTATACAATATataatgcaatgacttcatcCCTTTTA
AGGAAGTTGACAAATGTattgttatttctttttttcacttttttagaaaa
ccaTTAAACATGCAGTGTTCAGTGCCAACGACGGATCTCAAGAAATCCCT
TCTCTTGTCTCACAGTAAGTTATCCAATCGTTTTTATTATATCGTTTCTG
GGAATGGTTTCAACAGGTCTAACTCTCTTACCAGTATTGTACTTCCAATA
ACTTATCTGGGAGCTTACAcgaaagcaaaattttaaaaggcTATAATTTC
ACACATGAAAAATACATAATACATTCCTGATGTCTTGAACATTTAGGTca
aatttatgtttttataaacaCCAATGAACCACATACTCAATCAAAAAGTA
TCCAAcaaaattcatcatttttgcagatttgataAGAAAATGCTCTCGAT
TTTAATCAATATATGATTAGCAATCGTCCGTGGACTGGGGACGACTCAAT
CCTTTCATAAAGTAAAACGGTGGGAAACGTTTTGCGAAAAAGAACATGTA
GTCTCTCTCGTTTCGTTTCATTTTAGTGCAAAAACAATCCGGTTTTTCAA
GGAACGCTGGTGGAGGTGTTTCACCGATGTCTTTTAAGACTTctaatatt
ttgtcaaatttttggatAGTGCCATCCACATCTGTCGATGTGCTGTTGTT
TAAGCAAAATGTCACGACAGCGTCATTAAGTTCGCGAAACAACATCAAAT
CTGTTTTGAACTTTTCTTTATCTTGTTTCCCGATAATTTCATCTAATCGT
TTCGAGAAATGATTATACAGGACCGCGTCGAAGTAATTCCAGCCGCGTAT
ACTTTCGGCCGTCGCGTTTGAAATGGCAAATGATTCATTCTGCAGGTTAT
GGTTGACGTGTTTCTTCATGTAGACTATATCCATGAAGTCCCAACACATG
AGCTTCTTCAACAGTAATAAACTTTCATCATATTTCTCAGTGATCATAAC
CAAATGAAACGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044304	XLOC_044304	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:1090986..1098447 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194581	0.0942795	0.169643	0.0860179	0.181303	0.00258437	0.183397	0	0	0.0196687	0	0.0417641	0.470864	0.160384	0.270312	0.109458	0.297356	0.279058	0.129801	0	0	0.554934	0.274843	0.279852	0.247296	0	0.156738	0.0178272	0	0

Blast

[Close]

BLAST of TCONS_00071288 vs. Swiss-Prot (Human)
Match: KIF25 (Kinesin-like protein KIF25 OS=Homo sapiens GN=KIF25 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.154e-34
Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 3

Query:  780 RVYKPNDDQTMIFADVAPLLTSLLDGYNVCIMAYGQTGSGKTHTMVGDHSLYNDLPDNEEEYKEGIIPRSAKEIIRLMKERGSATESYSLEISVFEVYNNEINDLLARDD---AKTIKHAVFSANDGSQEIPSLVSQ*V 1187
            RVY P + Q+ +F DV PLLTSLLDGYNVC+MAYGQTGSGK++TM+G HS    +   + +   GIIPR A+E+ RL+ E  + + S  +E+S+ EVYNN+I DLLA+D       +K  V +A DG  E+  L S+ V
Sbjct:   31 RVYGPAESQSAVFGDVCPLLTSLLDGYNVCVMAYGQTGSGKSYTMLGRHSDDGPVLPLDPQSDLGIIPRVAEELFRLILE--NTSRSPKVEVSIVEVYNNDIFDLLAKDSIAAVSGVKREVVTAKDGRTEVALLASEAV 167

The following BLAST results are available for this feature:

BLAST of TCONS_00071288 vs. Swiss-Prot (Human)

BLAST of TCONS_00071288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KIF25	2.154e-34	49.64	Kinesin-like protein KIF25 OS=Homo sapiens GN=KIF2...	[more]

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TCONS_00071288 (transcript) - C. hemisphaerica