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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071287 ID=TCONS_00071287|Name=TCONS_00071287|organism=Clytia hemisphaerica|type=transcript|length=2212bpRun BLAST on NCBI protein sequence of TCONS_00071287-protein >TCONS_00071287-protein ID=TCONS_00071287-protein|Name=TCONS_00071287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=656bp MLANMNKMMMEKVKSFQQQLRSRDERIVALETENAMLYLKLAQCQCQLRDRun BLAST on NCBI transcript from alignment at scaffold_60:1090983..1116103+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071287 ID=TCONS_00071287|Name=TCONS_00071287|organism=Clytia hemisphaerica|type=transcript|length=25121bp|location=Sequence derived from alignment at scaffold_60:1090983..1116103+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:1090983..1116103+ >TCONS_00071287 ID=TCONS_00071287|Name=TCONS_00071287|organism=Clytia hemisphaerica|type=CDS|length=27594bp|location=Sequence derived from alignment at scaffold_60:1090983..1116103+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071287 vs. Swiss-Prot (Human)
Match: KIF25 (Kinesin-like protein KIF25 OS=Homo sapiens GN=KIF25 PE=2 SV=2) HSP 1 Score: 295.434 bits (755), Expect = 7.718e-92 Identity = 168/389 (43.19%), Postives = 233/389 (59.90%), Query Frame = 3
Query: 783 RVYKPNDDQTMIFADVAPLLTSLLDGYNVCIMAYGQTGSGKTHTMVGDHSLYNDLPDNEEEYKEGIIPRSAKEIIRLMKERGSATESYSLEISVFEVYNNEINDLLARDD---AKTIKHAVFSANDGSQEIPSLVSQPVSSAREVIDYVTYGMRHRHEDSTKVHAHSSRSHLIVQLNLFQTNMASSATTPLDERSDETSPALSPSVGRSKQIGTSIXXXXXXXXXXXXXXXXXXXKAHSRSSTPVSRSQELVSPTSSSTNNESQXXXXXXXXXXXXXXXLQLVDLAGSECVGMSGVTGSALRETSNINKSLSALADVLQALSENQNHIPYRNTKLTHILQDTIGGDSKLLVMLCVSPVQKYTTETSQCLAFGSRTRQVARGPAKKRRPT 1940
RVY P + Q+ +F DV PLLTSLLDGYNVC+MAYGQTGSGK++TM+G HS + + + GIIPR A+E+ RL+ E + + S +E+S+ EVYNN+I DLLA+D +K V +A DG E+ L S+ V SA ++++ V G++ R + T VHA SSRSHLI+ + L AS + + D+ T P GR+ SR ++ + + +LV + + Q +LQLVD AGSECVG+SGVTG ALRE + I++SL+ALA VL AL E++ H PYRN++LTH+LQD +GGD+KLLV+LC+SP Q++ +T Q L FG R RQV RGPA+K+ P+
Sbjct: 31 RVYGPAESQSAVFGDVCPLLTSLLDGYNVCVMAYGQTGSGKSYTMLGRHSDDGPVLPLDPQSDLGIIPRVAEELFRLILE--NTSRSPKVEVSIVEVYNNDIFDLLAKDSIAAVSGVKREVVTAKDGRTEVALLASEAVGSASKLMELVHGGLQLRAKHPTLVHADSSRSHLIITVTL---TTASCSDSTADQACSATLPREQTEAGRA---------------------------GRSRRASQGALAPQLVPGNPAGHAEQVQ-------------ARLQLVDSAGSECVGVSGVTGLALREMACISRSLAALAGVLGALLEHRGHAPYRNSRLTHLLQDCLGGDAKLLVILCISPSQRHLAQTLQGLGFGIRARQVQRGPARKKPPS 374 The following BLAST results are available for this feature:
BLAST of TCONS_00071287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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