TCONS_00071286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071286
Unique NameTCONS_00071286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071286 ID=TCONS_00071286|Name=TCONS_00071286|organism=Clytia hemisphaerica|type=transcript|length=464bp
CAGAAAGGGCAgcacgtacggAATCTAGAAATAACAGAGTAAGTGATTGG
CGTAGCTTTCAAGCAAACAataagaagaagaaagaaaagaaaaaggctAA
AGCTGCTTCCACATTCAAACCGTTCAAACCACCTTCTCTAAAACCTGAAC
AAAGATGAGGTGTTATCTAAAGTTACAGATCATGTAAACACGCTGTATGG
TGGATGACACTTTAGTACTTATAGCTTAAGGTGGGAGCTGGACATGGTGT
AAATAAGGGAGGTTTCTTCAGTCACCCAGTAAAACCAATCCGTGGTTCTT
TTGCAAGTGATCCTCCTATACATCAATTTTATAATACCACAAGTCACGAG
GTGGAAGAGGATTTTATTGACAGTTGAATTTAATGTAAATAGGTAGACTT
TTTGATAAAgttcaaacaaaaaaacaataaaaatctcATGTATTTTTTGT
ACCTTCTTTCCcag
Run BLAST on NCBI

transcript from alignment at scaffold_60:1090154..1090831+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071286 ID=TCONS_00071286|Name=TCONS_00071286|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at scaffold_60:1090154..1090831+ (Clytia hemisphaerica)
CAGAAAGGGCAgcacgtacggtaggtcgtttaccttgcCCTCCTCCCCCT
GATCAACCAACACTAGTCATGACTTGTTATTGGACAAGATGATTTTATGT
TCGTCTGCCTAATCACAAATACTGTTTTTTTATGTAAGAAAAAAACTACT
TAACAAATCAGACAGTTATAATTATTGTCACTTTCAAGATAAGTCTGATG
TTTCTCAATTgttcgtgttttttttttcgtttaggAATCTAGAAATAACA
GAGTAAGTGATTGGCGTAGCTTTCAAGCAAACAataagaagaagaaagaa
aagaaaaaggctAAAGCTGCTTCCACATTCAAACCGTTCAAACCACCTTC
TCTAAAACCTGAACAAAGATGAGGTGTTATCTAAAGTTACAGATCATGTA
AACACGCTGTATGGTGGATGACACTTTAGTACTTATAGCTTAAGGTGGGA
GCTGGACATGGTGTAAATAAGGGAGGTTTCTTCAGTCACCCAGTAAAACC
AATCCGTGGTTCTTTTGCAAGTGATCCTCCTATACATCAATTTTATAATA
CCACAAGTCACGAGGTGGAAGAGGATTTTATTGACAGTTGAATTTAATGT
AAATAGGTAGACTTTTTGATAAAgttcaaacaaaaaaacaataaaaatct
cATGTATTTTTTGTACCTTCTTTCCcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044303XLOC_044303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071286-exon-scaffold_60-1491911889:1090154..1090173TCONS_00071286-exon-scaffold_60-1491911889:1090154..1090173Clytia hemisphaericaexon
TCONS_00071286-exon-scaffold_60-1510915933:1090154..1090173TCONS_00071286-exon-scaffold_60-1510915933:1090154..1090173Clytia hemisphaericaexon
TCONS_00071286-exon-scaffold_60-1575043694:1090154..1090173TCONS_00071286-exon-scaffold_60-1575043694:1090154..1090173Clytia hemisphaericaexon
TCONS_00071286-exon-scaffold_60-1491911889:1090388..1090831TCONS_00071286-exon-scaffold_60-1491911889:1090388..1090831Clytia hemisphaericaexon
TCONS_00071286-exon-scaffold_60-1510915933:1090388..1090831TCONS_00071286-exon-scaffold_60-1510915933:1090388..1090831Clytia hemisphaericaexon
TCONS_00071286-exon-scaffold_60-1575043694:1090388..1090831TCONS_00071286-exon-scaffold_60-1575043694:1090388..1090831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1090154..1090831 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3798	14.0142	17.5594	23.3513	6.32213	7.86148	15.247	13.252	65.3794	54.9529	35.4107	47.1289	14.2119	18.6704	12.7875	15.0902	20.2296	19.1663	6.35551	9.73408	5.67916	9.08328	15.4285	17.0869	5.69263	5.32083	12.1897	7.85306	8.19139	7.75179
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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