TCONS_00071285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071285
Unique NameTCONS_00071285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071285 ID=TCONS_00071285|Name=TCONS_00071285|organism=Clytia hemisphaerica|type=transcript|length=793bp
ctcgattcaaacGCGAACGTATGTGCGGCttaaaattaggcctttgaaat
cggacccttacaatgCAGAAAGGGCAgcacgtacggtaggtcgtttacct
tgcCCTCCTCCCCCTGATCAACCAACACTAGTCATGACTTGTTATTGGAC
AAGATGATTTTATGTTCGTCTGCCTAATCACAAATACTGTTTTTTTATGT
AAGAAAAAAACTACTTAACAAATCAGACAGTTATAATTATTGTCACTTTC
AAGATAAGTCTGATGTTTCTCAATTgttcgtgttttttttttcgtttagg
AATCTAGAAATAACAGAGTAAGTGATTGGCGTAGCTTTCAAGCAAACAat
aagaagaagaaagaaaagaaaaaggctAAAGCTGCTTCCACATTCAAACC
GTTCAAACCACCTTCTCTAAAACCTGAACAAAGATGAGGTGTTATCTAAA
GTTACAGATCATGTAAACACGCTGTATGGTGGATGACACTTTAGTACTTA
TAGCTTAAGGTGGGAGCTGGACATGGTGTAAATAAGGGAGGTTTCTTCAG
TCACCCAGTAAAACCAATCCGTGGTTCTTTTGCAAGTGATCCTCCTATAC
ATCAATTTTATAATACCACAAGTCACGAGGTGGAAGAGGATTTTATTGAC
AGTTGAATTTAATGTAAATAGGTAGACTTTTTGATAAAgttcaaacaaaa
aaacaataaaaatctcATGTATTTTTTGTACCTTCTTTCCcaggatagaa
atatttattttgctttttgtatttttttgccttttcatGCCTG
Run BLAST on NCBI

transcript from alignment at scaffold_60:1090089..1090881+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071285 ID=TCONS_00071285|Name=TCONS_00071285|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at scaffold_60:1090089..1090881+ (Clytia hemisphaerica)
ctcgattcaaacGCGAACGTATGTGCGGCttaaaattaggcctttgaaat
cggacccttacaatgCAGAAAGGGCAgcacgtacggtaggtcgtttacct
tgcCCTCCTCCCCCTGATCAACCAACACTAGTCATGACTTGTTATTGGAC
AAGATGATTTTATGTTCGTCTGCCTAATCACAAATACTGTTTTTTTATGT
AAGAAAAAAACTACTTAACAAATCAGACAGTTATAATTATTGTCACTTTC
AAGATAAGTCTGATGTTTCTCAATTgttcgtgttttttttttcgtttagg
AATCTAGAAATAACAGAGTAAGTGATTGGCGTAGCTTTCAAGCAAACAat
aagaagaagaaagaaaagaaaaaggctAAAGCTGCTTCCACATTCAAACC
GTTCAAACCACCTTCTCTAAAACCTGAACAAAGATGAGGTGTTATCTAAA
GTTACAGATCATGTAAACACGCTGTATGGTGGATGACACTTTAGTACTTA
TAGCTTAAGGTGGGAGCTGGACATGGTGTAAATAAGGGAGGTTTCTTCAG
TCACCCAGTAAAACCAATCCGTGGTTCTTTTGCAAGTGATCCTCCTATAC
ATCAATTTTATAATACCACAAGTCACGAGGTGGAAGAGGATTTTATTGAC
AGTTGAATTTAATGTAAATAGGTAGACTTTTTGATAAAgttcaaacaaaa
aaacaataaaaatctcATGTATTTTTTGTACCTTCTTTCCcaggatagaa
atatttattttgctttttgtatttttttgccttttcatGCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044303XLOC_044303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071285-exon-scaffold_60-1491911889:1090089..1090881TCONS_00071285-exon-scaffold_60-1491911889:1090089..1090881Clytia hemisphaericaexon
TCONS_00071285-exon-scaffold_60-1510915933:1090089..1090881TCONS_00071285-exon-scaffold_60-1510915933:1090089..1090881Clytia hemisphaericaexon
TCONS_00071285-exon-scaffold_60-1575043694:1090089..1090881TCONS_00071285-exon-scaffold_60-1575043694:1090089..1090881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1090089..1090881 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.48949	7.15062	11.1108	13.0203	55.4056	38.841	63.6353	65.2855	29.3512	26.226	21.282	19.678	6.8849	5.06461	9.49101	7.8854	10.6856	11.4502	3.55356	5.27794	8.44515	8.23849	12.4878	10.9036	23.7344	17.8759	6.50599	7.41677	6.94193	7.19468
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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