TCONS_00071284 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071284
Unique NameTCONS_00071284
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071284 ID=TCONS_00071284|Name=TCONS_00071284|organism=Clytia hemisphaerica|type=transcript|length=697bp
TAAAAGCCTTTGTACCTTGAGAGTTAGACATTATTGATCTTGGTACCATt
gaaaagGTGAAAGAAATCGAGAAGAGAGATCAAGTATTGACAAGTGACAA
ACAAATTGACAGGTTGACAAAAGCAGGATCAAAATATCTTAACTTGAATC
CTTACGAGGTTCTTCAAATTTCACAAGATACAACAGAAGAGGATATGaga
aagaaatataaaaagCTTTCGATTTTAGTTCATCCAGACAAAAATCCTGA
TGAAAAAGAACGTGCTCAAAAAGCCTTTGATGCTTTAAAGACTGCAAAGG
AAACACTAAGTGACCCTGATCAagtcaaaaagatcaaattatTACTTGAG
GAAGCAGCTGCTCTCTTAGAAATGAATGTAAGTGTTATTGGATGTTGCTG
AAGATTTCTTttctacgtcatatcttcctccGTTTCGATCGTAAAACTCC
TAACTCTTTGGGGGTTACTaatggccgcctatagcagtgcctatagacca
agagtaaggcctaaaagcctggagctatCTCTTGTGTAGACTAAAGATTT
CGCGATAACAAAGACTTTACTCACCAGCTGATAAACGATTCTTAGGTTAA
ACATTTTTATGGAAATCTTTTAGGGCTTGTTTATTCTTATTATGTCCTGA
TTTTCAGGATtagaatgttaaaaaaaaataatcttaATTGTAATGCT
Run BLAST on NCBI

transcript from alignment at scaffold_60:1086668..1088583+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071284 ID=TCONS_00071284|Name=TCONS_00071284|organism=Clytia hemisphaerica|type=transcript|length=1916bp|location=Sequence derived from alignment at scaffold_60:1086668..1088583+ (Clytia hemisphaerica)
TAAAAGCCTTTGTACCTTGAGAGTTAGACATTATTGATCTTGGTACCATt
gaaaaggtatttttataCTCATTCTAAAGGCATTCGATTTCAGGCTAAAT
TCTGAGCACTTTTCCCACGTGCCGTTTTTTGATCTAGAAACACCAGTTAT
TGTCAGTTACCTTAGTAACACTAAAACATCTTTTTCTGTGTGTGTCTTAA
GACAAGTTGAGGGCACCCATAGGATCAATAAAAATTCTTAGGAAATCAAG
GAATATACATTATATGATTACAGGTGAAAGAAATCGAGAAGAGAGATCAA
GTATTGACAAGTGACAAACAAATTGACAGGTTGACAAAAGCAGGATCAAA
ATATCTTAACTTGAATCCTTACGAGGTGAGTAGTATTTTAGATCCAAAGC
AGGGGCTGTTCTTTCGAAGATTTATCTTGGCTAGCACTTTATAGCTGTCA
TTGTTTActattttgatttgttgacCTCCCTAATTAGAAATATATATATC
TTCATCGTTGTAGGTAATCCTAGACTTTTACCTTGTTTTTCACAATATTA
TACATATTATTTTGGCATTCTATTTATGGATTTTGAGTACTTTTGGaaga
aaattaacaattttattgtttgaaaagtAATGCTACAGCTCAAAGCCTGC
ATTGTAAGTAAGATTTATCAAATCATAAAATCAACAACAGCTGTAATAAA
CAACTTTTGGGGCAATTTCACAAAGAAACGCAAAGACCTGTatataaatt
tatataaatttgGTTGTTGACAATTATAATTTATACTCTCTGTCATAGGT
TCTTCAAATTTCACAAGATACAACAGAAGAGGATATGagaaagaaatata
aaaagGTACAAAATCTGTATTGTGAATGTTCTagttttatagatttttgg
GTTTGAATACTTGAGAACTAAATCAACTCATCAAAAGTCATGGTAAGATG
TTTCACTTACTGCTTTTAAGATCatagaaatttttaaagagcaAAATGTC
ACGTATATTTATTCCAAAACATTTTAACGGTCATTTCTTGTTGTTTGCTT
ATTTCTAGCTTTCGATTTTAGTTCATCCAGACAAAAATCCTGATGAAAAA
GAACGTGCTCAAAAAGCCTTTGATGGTATGGTGATAGAATATATTTCTTA
CAATACTATCATAAAATAAATCTAATCCAAATGATTAAATAACCTTTACT
GTTTAGATCCTTATCTCGTAAAGGTGAATTTTGATCAGACCAATggttga
taaatttattcgaagaAAGAATGTCCCTATAATATACTATATTCTAACTA
TTATTTTATGTATATTCATTGTTCCCAAAACCTTAGAACGAATTGTCTTA
TATTACACTGCTACCTTAATTAGAGCATTTTTTCTGTCTTTTAAAAACTC
GAAACGGTTCCGAATCTTTAGCCGATGGGGCCCTTACTTACCTGCCATTG
ACTGGCTGTTTTTTCTTTAAGACTGTTGATGTTTTCTAATGTTATTTTCA
GCTTTAAAGACTGCAAAGGAAACACTAAGTGACCCTGATCAagtcaaaaa
gatcaaattatTACTTGAGGAAGCAGCTGCTCTCTTAGAAATGAATGTAA
GTGTTATTGGATGTTGCTGAAGATTTCTTttctacgtcatatcttcctcc
GTTTCGATCGTAAAACTCCTAACTCTTTGGGGGTTACTaatggccgccta
tagcagtgcctatagaccaagagtaaggcctaaaagcctggagctatCTC
TTGTGTAGACTAAAGATTTCGCGATAACAAAGACTTTACTCACCAGCTGA
TAAACGATTCTTAGGTTAAACATTTTTATGGAAATCTTTTAGGGCTTGTT
TATTCTTATTATGTCCTGATTTTCAGGATtagaatgttaaaaaaaaataa
tcttaATTGTAATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044302XLOC_044302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071284-exon-scaffold_60-1491911889:1086668..1086723TCONS_00071284-exon-scaffold_60-1491911889:1086668..1086723Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1510915933:1086668..1086723TCONS_00071284-exon-scaffold_60-1510915933:1086668..1086723Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1575043694:1086668..1086723TCONS_00071284-exon-scaffold_60-1575043694:1086668..1086723Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1491911889:1086941..1087042TCONS_00071284-exon-scaffold_60-1491911889:1086941..1087042Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1510915933:1086941..1087042TCONS_00071284-exon-scaffold_60-1510915933:1086941..1087042Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1575043694:1086941..1087042TCONS_00071284-exon-scaffold_60-1575043694:1086941..1087042Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1491911889:1087466..1087522TCONS_00071284-exon-scaffold_60-1491911889:1087466..1087522Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1510915933:1087466..1087522TCONS_00071284-exon-scaffold_60-1510915933:1087466..1087522Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1575043694:1087466..1087522TCONS_00071284-exon-scaffold_60-1575043694:1087466..1087522Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1491911889:1087726..1087792TCONS_00071284-exon-scaffold_60-1491911889:1087726..1087792Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1510915933:1087726..1087792TCONS_00071284-exon-scaffold_60-1510915933:1087726..1087792Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1575043694:1087726..1087792TCONS_00071284-exon-scaffold_60-1575043694:1087726..1087792Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1491911889:1088169..1088583TCONS_00071284-exon-scaffold_60-1491911889:1088169..1088583Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1510915933:1088169..1088583TCONS_00071284-exon-scaffold_60-1510915933:1088169..1088583Clytia hemisphaericaexon
TCONS_00071284-exon-scaffold_60-1575043694:1088169..1088583TCONS_00071284-exon-scaffold_60-1575043694:1088169..1088583Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1086668..1088583 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.58204	2.5723	5.4743	5.19059	0	0	0	0	4.13492	1.58897	9.02759	3.45141	1.99877	1.12294	0.792251	0.660943	0.258573	2.85748	2.60303	0.689911	5.29619	0	0.839364	5.7113	0	0	7.14953	3.09475	1.88125	0
Blast
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BLAST of TCONS_00071284 vs. Swiss-Prot (Human)
Match: DNJC8 (DnaJ homolog subfamily C member 8 OS=Homo sapiens GN=DNAJC8 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.354e-29
Identity = 54/92 (58.70%), Postives = 74/92 (80.43%), Query Frame = 3 
Query:   57 VKEIEKRDQVLTSDKQIDRLTKAGSKYLNLNPYEVLQISQDTTEEDMRKKYKKLSILVHPDKNPDEKERAQKAFDALKTAKETLSDPDQVKK 332
            VK+IEKRD VLTS  QI+RLT+ GS Y NLNP+EVLQI  + T+E+++K++++LSILVHPDKN D+ +RAQKAF+A+  A + L D +Q K+
Sbjct:   27 VKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKR 118
The following BLAST results are available for this feature:
BLAST of TCONS_00071284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNJC81.354e-2958.70DnaJ homolog subfamily C member 8 OS=Homo sapiens ... [more]
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