TCONS_00071283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071283
Unique NameTCONS_00071283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071283 ID=TCONS_00071283|Name=TCONS_00071283|organism=Clytia hemisphaerica|type=transcript|length=760bp
CCGCAGCCAGGGGATCTCAGGAAATCGTCTCCTGCTCTTTAAACAATTTT
AACCTAGTGTTTTTATctgtttgaaaatcaaaatatggCTGGCAGCAGCA
AAGAAGAtaaatttgaaagtttcatgAAAGATGTGAAAGAAATCGAGAAG
AGAGATCAAGTATTGACAAGTGACAAACAAATTGACAGGTTGACAAAAGC
AGGATCAAAATATCTTAACTTGAATCCTTACGAGGTTCTTCAAATTTCAC
AAGATACAACAGAAGAGGATATGagaaagaaatataaaaagTTCATCCAG
ACAAAAATCCTGATGAAAAAGAACGTGCTCAAAAAGCCTTTGATGCTTTA
AAGACTGCAAAGGAAACACTAAGTGACCCTGATCAagtcaaaaagatcaa
attatTACTTGAGGAAGCAGCTGCTCTCTTAGAAATGAATGTAAGTGTTA
TTGGATGTTGCTGAAGATTTCTTttctacgtcatatcttcctccGTTTCG
ATCGTAAAACTCCTAACTCTTTGGGGGTTACTaatggccgcctatagcag
tgcctatagaccaagagtaaggcctaaaagcctggagctatCTCTTGTGT
AGACTAAAGATTTCGCGATAACAAAGACTTTACTCACCAGCTGATAAACG
ATTCTTAGGTTAAACATTTTTATGGAAATCTTTTAGGGCTTGTTTATTCT
TATTATGTCCTGATTTTCAGGATtagaatgttaaaaaaaaataatcttaA
TTGTAATGCT
Run BLAST on NCBI

transcript from alignment at scaffold_60:1077760..1088583+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071283 ID=TCONS_00071283|Name=TCONS_00071283|organism=Clytia hemisphaerica|type=transcript|length=10824bp|location=Sequence derived from alignment at scaffold_60:1077760..1088583+ (Clytia hemisphaerica)
CCGCAGCCAGGGGATCTCAGGAAATCGTCTCCTGCTCTTTAAACAATTTT
AACCTAGTGTTTTTATctgtttgaaaatcaaaatatggCTGGCAGCAGCA
AAGAAGAtaaatttgaaagtttcatgAAAGATGTGAGTTgttttttcctc
ttttaaaCTTCATAGGTATATATTCTTTTATAccatttcattcttttttt
atttctttgggGATGCAAAAGtgttttatatatgaaagtactTGTAGAGA
GACATCTACCCACAGTCAAACTTACCAAACGTCAAGTtagatcaaaaaca
aaaccatggATAACGCCAGGAATTTTGAAGTCAATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNatcgttgtttcgtcagccatctttaaat
TCGCTACGGCTTGCTCACGcagtttacatttaaaaaataatggagataat
ttccaaacttttttcagaaagttgccggaattaattatctccataatcaa
aatcaacagaaaagccgcatttcacaaaaaatagaCCGACCGTCggcgaa
attcaagggccgtgcAGACCGTCTGAACAAAGAAACTCGAGACGTAAaca
tcgggccgtttgtttcggttaaaatttttgtaaaatagcAAGCGAACGAA
TATTTAGGTATGTAAAAATAGGAAAAGAAAtgtggaaagtaacatttgtc
acggaataaacgtattaaaaatcgatatttctggggaaatttcttagcgt
caaagactctaacccacccaccccttcgcgtcaatttgacgttagtcgtg
ggaagaatcgatatgtgagtgaccccttattCAAACTTATTCAATAGGCT
GTCGCGTTCTCCAAACAACTTATTGAAGTTCTTACCATTTAAACGTGTAT
AGATAAGCCTCTCATTTGATTCCAGTAATGTATTTGGTCCAAGTCCAAGC
TTTTCCATGATGCCTGGTCTGAAAGGCTCGATAATAACATCAGATGAAGA
TGccaatcttttaaaaacattctgtccttttgaagattttaagtCCAAAC
AAATTGATTGTTTTCCACGAGAAAGAGAGTCCAAAGTAAAATTCTCATTG
GTTCGATTAACTCGGCATACTTTAGCTCCAAAATCTGCAAGGATCATTCC
TGTAAATGGTACAGGGGCAAGCCCGGCAAGCTCCAAAACCTTGATGCCAT
TCAGGGGCAATTTCCTCGTGACCCCTGCTGCagccgccattttgtttgtt
atgGTTCAGTGTAAAAGAATCACGAAGTCACGAAAATTAGAAGGCTTGCT
TCACACGAAGATCTATCTTAAAGCCTGTTTTACATTAGACGTGTCATTAT
CTTAgttgtcattttgaaatttttcataaaagtcAAAAGTTTGACAAAAG
TCATGAAAGTGTGTGTCACAGTGTCTGTAGTGTGCAAGGAAAGTGGGAAT
CCAGGAACTTGTACACACTTGTACCTAGTGtctatcatcatcatcatcat
catcattcaatcatcaatcagaCAGCATGGAAATCAGGTCAAAATTCAAT
CCAGATATATTATTAAGTATTATAATGCGTAAGAAGAGTTTGAGGAGGGA
AAAAGGTgatacaaacaaacaaacttgaCTTGATGAAGATTTCCATTCCA
GATTCCAGGGggtttaagcttggatttttCAAGAGGTAAATtgtatttgt
cctatttttcatattttcaaaggcAGGAGCTCTAAAAaactctaaaacag
catctaataacatgaaaaccagaatatgattcttcaatagaccttttttc
aaagaggacgtcctgttgaataattatgtagtccagagCCATAATAACAA
TGGTAGAGCcgtgcataattactgtatcatgcatattgtaataattatgc
atggttttatcattgtttttctgctggactacataattattcaaacgacc
cacggcatggcccaaACATGTTCAGGCCTCTttattaatactttttaaaa
atggcccgcgcgtggcccgcgcagtttcggaccatgttcgggtcagattt
tcgaaaacttgctatgatcgcgcgtgtaatttcagggactcaatatttat
attttaaattccttattttagcaaacaaatttaaaaatcttcatctttat
tcattcaaatatatattgttcaaatataagttaggaaaaataaaaagaat
gatttgaatcttacataatatggtcttctttttattctttatcccgttcc
cttttctcgtggtcttctcctattcgaagcagaatttttctgtatcgttt
tttgtactgttatacaactttgtgaatcaaactggtatttggaactttga
atttgtctaaggCAGgcagcaatcacaaatatcttcgtttcgcgtcgccc
gatcgactctcgaaaattgagtagaattgagtcggtgagtcggtaaattt
gtcggactttttctgtcgaTGACGTTTCTTTCGTTCAAAAATgttattat
tgccgatttttttgcgagcgatttctagcgcattcgcagcattttgactt
tgtccATCattacagtgttcaaaggtcataatttgaaaccacccgTAACG
CGCGGTCATTTTgactggctggctggcagtttccttcaagaatacactcc
aaaaatggatgattaAGGTCTGACGAGAAGAAGAAATTCACTGGgtccaa
ttttaagaaaacccgaccgaccgactcactttttcgacccaacgaggacg
cgaaatgaagatatttgtgattgtcgcctagtgaaaatatttaacaatgg
atgatgataaaccaggaaaggtaaataaaatggcccgaacatggtccgaa
caaaatgttcgggccgattacaataatacttttttgtggcccgagcatgg
tccgaacatgCCATGTGTCGTTAGCTACCATCTTGCTTCCGGCATTTTCA
GGGAAGTTAAAAAATGAGCTTTATAAAGTCTCTGACAGTCAACACtagct
atttttttatttcttatttcttatttctttttttcttttctctaaaGATT
CAGTCAGTTATCCctgtaaaacaataaaaattcccAGAAAAACTCAGTGA
AATCTCAGTCTGGAAAGTTGAAGCTTTGTGCGCTAAGCTGAATGGTTTGg
ttacaaaatgcataaaacataatgcatattgcataatgcataatagtatt
gtttaatttacattacgattttatattttctaaaactctcctttgtagag
gctaaaaccgcgaaaacctctttaaAAGAGCAGAcatgatttttactttt
caaatctgaacgaaagagaaaacattctaatcataacaacaaagcatTCT
CTGTCAGCatatataaataataaaaagatgcaacagatcagaaaggtttt
tcccttcttctttctcaaaaaaaaggtaaacacataaacattcgaatgta
aaaaaatttgaattctatttttttaaatctagctttcgcatgaagctctt
taatttatattggctggatattggcttatctaacaaaaagcattcacatg
gtttaagagggaaaacccgttgaaatttattagcaattgttcgaaaagat
ctctggaGAATCCAGAATCAGAATAAagatattgctataaaatttacgtt
ttcaagttagaaaagtaatatacggaggagatattttcgtgttttttcta
cactatactacgttttctaaaatacaactatgaaaatcaaaacggcgaca
agcattttcagtggatcaaggattttcttcatcatccaaaattctaattt
acagctttctaccctttattttctggcagaaagtggtatatttgttttgt
tgaaagtattatctttcaaattctccttattatagcctctaaaattgaca
tttttcagatattatgcattatgcatatTATGTTTTGGACCCGCTGGTTT
GGTTACATACCTAGAGCTTCATCTTTTTTGGGATGCCTTTTTTACTGGCT
AATTCAGGAAAGGTAGGGTTGACAGGGTGTGCTATGGCtgacacagacag
acagaagaTGTTAGGTAGGTAGgcagggggggcacgcagttactacaaga
catgatgtgtagtaagtgctttttcaacattttttttcaggaccaccacc
ctttgcagttactacatcttggtagtaactgttttcagaaaagatttcca
ggtaccacccctgtttttgagtgatatcatcaaaaaaatgctcgaaatta
ccctaaattgcgattatttNtttttgagtgatatcatcaaaaaaatgCTC
GAAgttaccctaaattgcgattatttttcaacctaaagccatttttgtgc
taaattttcttttaatatacttgattaacagctgttgagaacattttaat
gataattagggaaagcataatttcaaagttgggtctgagaaaaatttcaa
attttttttcgtccatttataacaaaNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNtaacaaagaattttttcacaaa
aaaattcattttttgtgaaaaattttgaaagttctttaaaaagaattaaa
atataagcacttactacaccaaaagtgcgtGTAGtgactgttttcataac
ttctgaatacagtaccaccacggtagtaagtgtcatactgtcttgtagta
actgcgtgccccccccctggTAGGCAGGTGGAGCTCTAGCTGGAGCTGGC
TGGAGCGGAGGGCTGCACTTTATTCTAAAGATAAACAGTCAGGGAAATTC
CTCAATTgtggtatactgcaattgcagtagttttcattcgtggttagcct
acaaaggcttataacgactacatatagtgctggtcgacaaagataaacaa
acattgACTGTAAAAAATTGTATGAGTGAGAAGAAAgcttgtaaaaaata
ttttgtgcgttaaaaagatatgatcaactatgtacaaaaattgcctgtct
tctccttgaatcttgaattctgttttatgaatatactgcaattgcggtat
ataaaaaatataaaagtgaTGTTTATACGTGgcaattgcagtaaaaaatt
actaccgcaattaagggatttccctgactgataAACCAGAtgtaattaat
cgaacagttcaATTGCCGAACTAATTGAGCTTTGTCAAACTTACTCAAAC
AACAAAAGTAAATTCTTGAATTAAACTTTTTAGAATTTGCTTTaaattgt
gagtgttcaatTAATTTTGACTAAAGATTAAAGGCCATGAGACTCTTATC
TTTTTTCAAGGATCAATCAAACCTCAGATCGcctaatttttttgcttccg
ctGACAGAGGCTGAAAAAGGGTTGctcaatttctttattcaaaattttat
tcgaactttgtatttttgaaaaattagtgagtattcgattaaaagTCGAC
AACCAAAATTAGTCGAGAATTGATTAAGCTTTGACAACCAAACTTAGTTG
AACATTAATTATTGGacaacaaagttcgattaggtttgacaaagttcaat
taaaaatacagttcaattggttcgattaattacgtctagGATAAAGCtat
aaaaaacatatttataTCAGCAGATCTCAAACACTCTGAAAAAGTGGTAA
AAGTGACAACTCTCACCCATTCACGCATTTCCACATTTCTACATTGCCTC
ACACAATTTTGATTTCTCACTTATATTTTGGATTatgagaaaaaattttc
gattttcagaaaaaagtttcCCCGATCTTccgttttttgtaaaaaatttc
ctgattaatgatttcaaaaaatcaaagaaatcaggctaaaatttcgaatt
ttgtttCCCAATTTTTATCTCATGCAAAATAATCATCTCAAGGTCTAAAA
GTGTAAAAATCACAATGCCAATAATTTTGttgaagttttgaaaacgaTGA
ACTTCTTTTAGTTCCAAAAATGTCACTGAAACTTTTATGACATTTCAATA
GACCTTTATTTATGTGGTGGATTGTCTGTAGAATAACAAATTACTACCAG
CATAATTACATAAATTCTTGCCTTCAAACAGCACAAGCAGGatcaataat
tttctttgaaatgaacAGTAGTgctgtaaaagaaaaaatcaattatagat
gaagttataatttaaGTTAAAATTTATGCTGTGCGTAGTAATTAGTTACC
GTGTATACACTTGCACtgatgttttttaataaaacgaaAAGCTTAAGCCG
AAAAATAATtgtcaaaatgttttttgaatcaaAGTTACCATGAAGGTAAG
TTACTCGCCGACACAATCGCGGGTAAATGAAACAGTGTggtttgataata
aaaaatcatgcaagatcataaatttcaagatggcgggAATTCAGATGTTT
CTTGATGGCTGCTGGAACCTCAAATTTAATAATGATATTaaacataatta
tgcatgacatcTTTTCATGATTAGGAGATATTTATACATTTCACTATCCG
CaaattttcttgtaaatttattttgattcaaCTTTGTATGttatgaccag
ccaggtcattcatttgagggctatgcaagtttccttccaaggatgcaagt
tacccaacttcacggtatTCAATAGTCTATTGTGAACTCCTAAACAACTC
TTGGATTTTTGtccttttaaaagtttcttctgTTTATTAACCATCAAACC
aaaagttggtctaatgtcgacatttCTAATTCTGACAGTGAGACCCATCT
TTAGAGCTGGGATTAATAGGAAGATGGGAATTCACTTTCTAccatcaaac
taatcaaactttttactgacTGATGTTTTGAGtgatttatttgaattttt
tttttaatttttgggttTTCCAGGTATACAACCCCTTATTACCCGGTACA
ATCTTGATATCACCATTGAGAAATGACACACCATCGTTAAGTACCCTGTA
CTAAAGTCGATTTCCCCCTCAAAACAGGTATACCACCCTTTAGTTCTTAG
TGATGGTACTTTCTGGTACACCTCCCCCtcctaaattttctaaaaaacac
TGTATTAAAAGACATACCACAGCACTCTGTACCGCCCTTAATATCGCGGA
AAGAATTCCTGTCAAGTTAGGTCAAGTCAAATATCATTttgaaaccaatt
ttttttattcaaaagaaataaagtttcaaataaaaaaaaaattataacaa
gcttgtcaaagaaatcaaaagaactACAATAAACTAGTCtcgaaaaaaag
agaaataagaATAACTAGGAAAAAAGTTAAAGATAGTTTTAAAACTGCTC
ATTCAAAGGTAAAAATGTAACAACCATCCCAAGAAAATCCTAAGAACTTA
TAAAGTATACTATTGAATTAAAATATAGACTGCCTATAATAAGAAATGGT
CCATTGCACCTCTGCAGTACTCAGCAGTGAAAAAAGGTCCAGAGACTTTA
TAGGTTTTGATCCAAATAGtatcaatattttcataaaagaaTAATAGGGA
CTCTTAAACAGTGATCATATTGTTTCAAAAGTAATCAATTCATTGTGGAA
TGTTCactgtatttttttaatttgaagcttATTAAGGACCCTAAAATAAT
ATGAAACTGATTTTAAAATGCCAAATAAAtaggtgaaaaaataaaagggt
acatcttttgtgattttgtaGGATTTTAAGTACCAGATACTAACTTGATG
CCTCATATTTGGTATTGACACCACTTAGTCCCTTgatacaaatttacaaa
aatgttttttctcaaTTATGACCACCACTTAGTATCATGTACTAAAttgt
tttttacttaccttatcAGACCACCACCCGGCACTGGTCCCCACaactta
gtaccgacccccccccctgggtttCCCcctaaaaagtgaaattttggaaG
ATTTAGTTTCCTGAAGGTAAAATGCCATGGAAAtcgaatgaaaaaaaatt
gaacctAATGATTGAAAAGCTGATGGTTGCTAAggcaaaatgactaaaat
ttgtgcaaatgaaaaaaaaatcactttaaaaatgcctaaaaGTACGTTTT
CAGCCCAAAATCCTTAGATATTAAAAATACATAGGTTCAGGTATATGGAT
TTAGTCCAGTCCCAAATTTCACTAGATATCACTGCTAGCTTGTtgactaa
aaaaacaaaaacaattgtgTCAGGGCGATTTCAAGAGTGCGGCTTAGTGA
ATTTTAGGTCTTTGATTTTGAAACCTTGCAATAACTTTGAAATAGATCAC
AGCTAACTTTGGCATTTCTGAGTACCTTATAATGTGTATTTCCAGGAATA
TATATGGTTTAACCTTTCCAATGCAcaacatattttgaaaaatgtgaaga
ATTCCAATTAAAAGCCTTTGTACCTTGAGAGTTAGACATTATTGATCTTG
GTACCATtgaaaaggtatttttataCTCATTCTAAAGGCATTCGATTTCA
GGCTAAATTCTGAGCACTTTTCCCACGTGCCGTTTTTTGATCTAGAAACA
CCAGTTATTGTCAGTTACCTTAGTAACACTAAAACATCTTTTTCTGTGTG
TGTCTTAAGACAAGTTGAGGGCACCCATAGGATCAATAAAAATTCTTAGG
AAATCAAGGAATATACATTATATGATTACAGGTGAAAGAAATCGAGAAGA
GAGATCAAGTATTGACAAGTGACAAACAAATTGACAGGTTGACAAAAGCA
GGATCAAAATATCTTAACTTGAATCCTTACGAGGTGAGTAGTATTTTAGA
TCCAAAGCAGGGGCTGTTCTTTCGAAGATTTATCTTGGCTAGCACTTTAT
AGCTGTCATTGTTTActattttgatttgttgacCTCCCTAATTAGAAATA
TATATATCTTCATCGTTGTAGGTAATCCTAGACTTTTACCTTGTTTTTCA
CAATATTATACATATTATTTTGGCATTCTATTTATGGATTTTGAGTACTT
TTGGaagaaaattaacaattttattgtttgaaaagtAATGCTACAGCTCA
AAGCCTGCATTGTAAGTAAGATTTATCAAATCATAAAATCAACAACAGCT
GTAATAAACAACTTTTGGGGCAATTTCACAAAGAAACGCAAAGACCTGTa
tataaatttatataaatttgGTTGTTGACAATTATAATTTATACTCTCTG
TCATAGGTTCTTCAAATTTCACAAGATACAACAGAAGAGGATATGagaaa
gaaatataaaaagGTACAAAATCTGTATTGTGAATGTTCTagttttatag
atttttggGTTTGAATACTTGAGAACTAAATCAACTCATCAAAAGTCATG
GTAAGATGTTTCACTTACTGCTTTTAAGATCatagaaatttttaaagagc
aAAATGTCACGTATATTTATTCCAAAACATTTTAACGGTCATTTCTTGTT
GTTTGCTTATTTCTAGCTTTCGATTTTAGTTCATCCAGACAAAAATCCTG
ATGAAAAAGAACGTGCTCAAAAAGCCTTTGATGGTATGGTGATAGAATAT
ATTTCTTACAATACTATCATAAAATAAATCTAATCCAAATGATTAAATAA
CCTTTACTGTTTAGATCCTTATCTCGTAAAGGTGAATTTTGATCAGACCA
ATggttgataaatttattcgaagaAAGAATGTCCCTATAATATACTATAT
TCTAACTATTATTTTATGTATATTCATTGTTCCCAAAACCTTAGAACGAA
TTGTCTTATATTACACTGCTACCTTAATTAGAGCATTTTTTCTGTCTTTT
AAAAACTCGAAACGGTTCCGAATCTTTAGCCGATGGGGCCCTTACTTACC
TGCCATTGACTGGCTGTTTTTTCTTTAAGACTGTTGATGTTTTCTAATGT
TATTTTCAGCTTTAAAGACTGCAAAGGAAACACTAAGTGACCCTGATCAa
gtcaaaaagatcaaattatTACTTGAGGAAGCAGCTGCTCTCTTAGAAAT
GAATGTAAGTGTTATTGGATGTTGCTGAAGATTTCTTttctacgtcatat
cttcctccGTTTCGATCGTAAAACTCCTAACTCTTTGGGGGTTACTaatg
gccgcctatagcagtgcctatagaccaagagtaaggcctaaaagcctgga
gctatCTCTTGTGTAGACTAAAGATTTCGCGATAACAAAGACTTTACTCA
CCAGCTGATAAACGATTCTTAGGTTAAACATTTTTATGGAAATCTTTTAG
GGCTTGTTTATTCTTATTATGTCCTGATTTTCAGGATtagaatgttaaaa
aaaaataatcttaATTGTAATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044302XLOC_044302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071283-exon-scaffold_60-1491911889:1077760..1077891TCONS_00071283-exon-scaffold_60-1491911889:1077760..1077891Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1510915933:1077760..1077891TCONS_00071283-exon-scaffold_60-1510915933:1077760..1077891Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1575043694:1077760..1077891TCONS_00071283-exon-scaffold_60-1575043694:1077760..1077891Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1491911889:1086941..1087042TCONS_00071283-exon-scaffold_60-1491911889:1086941..1087042Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1510915933:1086941..1087042TCONS_00071283-exon-scaffold_60-1510915933:1086941..1087042Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1575043694:1086941..1087042TCONS_00071283-exon-scaffold_60-1575043694:1086941..1087042Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1491911889:1087466..1087522TCONS_00071283-exon-scaffold_60-1491911889:1087466..1087522Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1510915933:1087466..1087522TCONS_00071283-exon-scaffold_60-1510915933:1087466..1087522Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1575043694:1087466..1087522TCONS_00071283-exon-scaffold_60-1575043694:1087466..1087522Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1491911889:1087739..1087792TCONS_00071283-exon-scaffold_60-1491911889:1087739..1087792Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1510915933:1087739..1087792TCONS_00071283-exon-scaffold_60-1510915933:1087739..1087792Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1575043694:1087739..1087792TCONS_00071283-exon-scaffold_60-1575043694:1087739..1087792Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1491911889:1088169..1088583TCONS_00071283-exon-scaffold_60-1491911889:1088169..1088583Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1510915933:1088169..1088583TCONS_00071283-exon-scaffold_60-1510915933:1088169..1088583Clytia hemisphaericaexon
TCONS_00071283-exon-scaffold_60-1575043694:1088169..1088583TCONS_00071283-exon-scaffold_60-1575043694:1088169..1088583Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1077760..1088583 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.19518	4.66721	6.10927	0.811292	1.17934	0.509754	1.2795	1.73767	6.42705	3.93572	5.70959	3.30178	2.9665	1.62465	1.74487	3.53304	2.15845	5.69465	5.23491	3.07644	3.04232	2.64657	5.98462	5.05006	2.58877	0.373005	5.66313	11.8516	5.4816	2.95548
Blast
[Close]
BLAST of TCONS_00071283 vs. Swiss-Prot (Human)
Match: DNJC8 (DnaJ homolog subfamily C member 8 OS=Homo sapiens GN=DNAJC8 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 9.446e-20
Identity = 33/61 (54.10%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:  112 FESFMKDVKEIEKRDQVLTSDKQIDRLTKAGSKYLNLNPYEVLQISQDTTEEDMRKKYKKF 294
            F +F  +VK+IEKRD VLTS  QI+RLT+ GS Y NLNP+EVLQI  + T+E+++K++++ 
Sbjct:   20 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQL 80

HSP 2 Score: 38.1206 bits (87), Expect = 9.446e-20
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 3 
Query:  291 VHPDKNPDEKERAQKAFDALKTAKETLSDPDQVKK 395
            VHPDKN D+ +RAQKAF+A+  A + L D +Q K+
Sbjct:   84 VHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKR 118
The following BLAST results are available for this feature:
BLAST of TCONS_00071283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNJC89.446e-2054.10DnaJ homolog subfamily C member 8 OS=Homo sapiens ... [more]
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