TCONS_00071282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071282
Unique NameTCONS_00071282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071282 ID=TCONS_00071282|Name=TCONS_00071282|organism=Clytia hemisphaerica|type=transcript|length=962bp
agagcacttacaaatcgattgtggtttcaaaacttcccggtggatttccc
ttttttctcaaatattacgaccatgattgtagagtCCGATCTAGGGTCCG
AAATAGGGTCTGGGGTCAGGGTCCAAGGTCCGGGTCCGAGTCCGGGTCCG
ACTTTTACAGTATGAaagtcactttcactttcagtcactCCGCAGCCAGG
GGATCTCAGGAAATCGTCTCCTGCTCTTTAAACAATTTTAACCTAGTGTT
TTTATctgtttgaaaatcaaaatatggCTGGCAGCAGCAAAGAAGAtaaa
tttgaaagtttcatgAAAGATGTGAAAGAAATCGAGAAGAGAGATCAAGT
ATTGACAAGTGACAAACAAATTGACAGGTTGACAAAAGCAGGATCAAAAT
ATCTTAACTTGAATCCTTACGAGGTTCTTCAAATTTCACAAGATACAACA
GAAGAGGATATGagaaagaaatataaaaagCTTTCGATTTTAGTTCATCC
AGACAAAAATCCTGATGAAAAAGAACGTGCTCAAAAAGCCTTTGATGCTT
TAAAGACTGCAAAGGAAACACTAAGTGACCCTGATCAagtcaaaaagatc
aaattatTACTTGAGGAAGCAGCTGCTCTCTTAGAAATGAATGTAAGTGT
TATTGGATGTTGCTGAAGATTTCTTttctacgtcatatcttcctccGTTT
CGATCGTAAAACTCCTAACTCTTTGGGGGTTACTaatggccgcctatagc
agtgcctatagaccaagagtaaggcctaaaagcctggagctatCTCTTGT
GTAGACTAAAGATTTCGCGATAACAAAGACTTTACTCACCAGCTGATAAA
CGATTCTTAGGTTAAACATTTTTATGGAAATCTTTTAGGGCTTGTTTATT
CTTATTATGTCCTGATTTTCAGGATtagaatgttaaaaaaaaataatctt
aATTGTAATGCT
Run BLAST on NCBI

protein sequence of TCONS_00071282-protein

>TCONS_00071282-protein ID=TCONS_00071282-protein|Name=TCONS_00071282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MAGSSKEDKFESFMKDVKEIEKRDQVLTSDKQIDRLTKAGSKYLNLNPYE
VLQISQDTTEEDMRKKYKKLSILVHPDKNPDEKERAQKAFDALKTAKETL
SDPDQVKKIKLLLEEAAALLEMNVSVIGCC
Run BLAST on NCBI

transcript from alignment at scaffold_60:1077571..1088583+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071282 ID=TCONS_00071282|Name=TCONS_00071282|organism=Clytia hemisphaerica|type=transcript|length=11013bp|location=Sequence derived from alignment at scaffold_60:1077571..1088583+ (Clytia hemisphaerica)
agagcacttacaaatcgattgtggtttcaaaacttcccggtggatttccc
ttttttctcaaatattacgaccatgattgtagagtCCGATCTAGGGTCCG
AAATAGGGTCTGGGGTCAGGGTCCAAGGTCCGGGTCCGAGTCCGGGTCCG
ACTTTTACAGTATGAaagtcactttcactttcagtcactCCGCAGCCAGG
GGATCTCAGGAAATCGTCTCCTGCTCTTTAAACAATTTTAACCTAGTGTT
TTTATctgtttgaaaatcaaaatatggCTGGCAGCAGCAAAGAAGAtaaa
tttgaaagtttcatgAAAGATGTGAGTTgttttttcctcttttaaaCTTC
ATAGGTATATATTCTTTTATAccatttcattctttttttatttctttggg
GATGCAAAAGtgttttatatatgaaagtactTGTAGAGAGACATCTACCC
ACAGTCAAACTTACCAAACGTCAAGTtagatcaaaaacaaaaccatggAT
AACGCCAGGAATTTTGAAGTCAATNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNatcgttgtttcgtcagccatctttaaatTCGCTACGGCT
TGCTCACGcagtttacatttaaaaaataatggagataatttccaaacttt
tttcagaaagttgccggaattaattatctccataatcaaaatcaacagaa
aagccgcatttcacaaaaaatagaCCGACCGTCggcgaaattcaagggcc
gtgcAGACCGTCTGAACAAAGAAACTCGAGACGTAAacatcgggccgttt
gtttcggttaaaatttttgtaaaatagcAAGCGAACGAATATTTAGGTAT
GTAAAAATAGGAAAAGAAAtgtggaaagtaacatttgtcacggaataaac
gtattaaaaatcgatatttctggggaaatttcttagcgtcaaagactcta
acccacccaccccttcgcgtcaatttgacgttagtcgtgggaagaatcga
tatgtgagtgaccccttattCAAACTTATTCAATAGGCTGTCGCGTTCTC
CAAACAACTTATTGAAGTTCTTACCATTTAAACGTGTATAGATAAGCCTC
TCATTTGATTCCAGTAATGTATTTGGTCCAAGTCCAAGCTTTTCCATGAT
GCCTGGTCTGAAAGGCTCGATAATAACATCAGATGAAGATGccaatcttt
taaaaacattctgtccttttgaagattttaagtCCAAACAAATTGATTGT
TTTCCACGAGAAAGAGAGTCCAAAGTAAAATTCTCATTGGTTCGATTAAC
TCGGCATACTTTAGCTCCAAAATCTGCAAGGATCATTCCTGTAAATGGTA
CAGGGGCAAGCCCGGCAAGCTCCAAAACCTTGATGCCATTCAGGGGCAAT
TTCCTCGTGACCCCTGCTGCagccgccattttgtttgttatgGTTCAGTG
TAAAAGAATCACGAAGTCACGAAAATTAGAAGGCTTGCTTCACACGAAGA
TCTATCTTAAAGCCTGTTTTACATTAGACGTGTCATTATCTTAgttgtca
ttttgaaatttttcataaaagtcAAAAGTTTGACAAAAGTCATGAAAGTG
TGTGTCACAGTGTCTGTAGTGTGCAAGGAAAGTGGGAATCCAGGAACTTG
TACACACTTGTACCTAGTGtctatcatcatcatcatcatcatcattcaat
catcaatcagaCAGCATGGAAATCAGGTCAAAATTCAATCCAGATATATT
ATTAAGTATTATAATGCGTAAGAAGAGTTTGAGGAGGGAAAAAGGTgata
caaacaaacaaacttgaCTTGATGAAGATTTCCATTCCAGATTCCAGGGg
gtttaagcttggatttttCAAGAGGTAAATtgtatttgtcctatttttca
tattttcaaaggcAGGAGCTCTAAAAaactctaaaacagcatctaataac
atgaaaaccagaatatgattcttcaatagaccttttttcaaagaggacgt
cctgttgaataattatgtagtccagagCCATAATAACAATGGTAGAGCcg
tgcataattactgtatcatgcatattgtaataattatgcatggttttatc
attgtttttctgctggactacataattattcaaacgacccacggcatggc
ccaaACATGTTCAGGCCTCTttattaatactttttaaaaatggcccgcgc
gtggcccgcgcagtttcggaccatgttcgggtcagattttcgaaaacttg
ctatgatcgcgcgtgtaatttcagggactcaatatttatattttaaattc
cttattttagcaaacaaatttaaaaatcttcatctttattcattcaaata
tatattgttcaaatataagttaggaaaaataaaaagaatgatttgaatct
tacataatatggtcttctttttattctttatcccgttcccttttctcgtg
gtcttctcctattcgaagcagaatttttctgtatcgttttttgtactgtt
atacaactttgtgaatcaaactggtatttggaactttgaatttgtctaag
gCAGgcagcaatcacaaatatcttcgtttcgcgtcgcccgatcgactctc
gaaaattgagtagaattgagtcggtgagtcggtaaatttgtcggactttt
tctgtcgaTGACGTTTCTTTCGTTCAAAAATgttattattgccgattttt
ttgcgagcgatttctagcgcattcgcagcattttgactttgtccATCatt
acagtgttcaaaggtcataatttgaaaccacccgTAACGCGCGGTCATTT
Tgactggctggctggcagtttccttcaagaatacactccaaaaatggatg
attaAGGTCTGACGAGAAGAAGAAATTCACTGGgtccaattttaagaaaa
cccgaccgaccgactcactttttcgacccaacgaggacgcgaaatgaaga
tatttgtgattgtcgcctagtgaaaatatttaacaatggatgatgataaa
ccaggaaaggtaaataaaatggcccgaacatggtccgaacaaaatgttcg
ggccgattacaataatacttttttgtggcccgagcatggtccgaacatgC
CATGTGTCGTTAGCTACCATCTTGCTTCCGGCATTTTCAGGGAAGTTAAA
AAATGAGCTTTATAAAGTCTCTGACAGTCAACACtagctatttttttatt
tcttatttcttatttctttttttcttttctctaaaGATTCAGTCAGTTAT
CCctgtaaaacaataaaaattcccAGAAAAACTCAGTGAAATCTCAGTCT
GGAAAGTTGAAGCTTTGTGCGCTAAGCTGAATGGTTTGgttacaaaatgc
ataaaacataatgcatattgcataatgcataatagtattgtttaatttac
attacgattttatattttctaaaactctcctttgtagaggctaaaaccgc
gaaaacctctttaaAAGAGCAGAcatgatttttacttttcaaatctgaac
gaaagagaaaacattctaatcataacaacaaagcatTCTCTGTCAGCata
tataaataataaaaagatgcaacagatcagaaaggtttttcccttcttct
ttctcaaaaaaaaggtaaacacataaacattcgaatgtaaaaaaatttga
attctatttttttaaatctagctttcgcatgaagctctttaatttatatt
ggctggatattggcttatctaacaaaaagcattcacatggtttaagaggg
aaaacccgttgaaatttattagcaattgttcgaaaagatctctggaGAAT
CCAGAATCAGAATAAagatattgctataaaatttacgttttcaagttaga
aaagtaatatacggaggagatattttcgtgttttttctacactatactac
gttttctaaaatacaactatgaaaatcaaaacggcgacaagcattttcag
tggatcaaggattttcttcatcatccaaaattctaatttacagctttcta
ccctttattttctggcagaaagtggtatatttgttttgttgaaagtatta
tctttcaaattctccttattatagcctctaaaattgacatttttcagata
ttatgcattatgcatatTATGTTTTGGACCCGCTGGTTTGGTTACATACC
TAGAGCTTCATCTTTTTTGGGATGCCTTTTTTACTGGCTAATTCAGGAAA
GGTAGGGTTGACAGGGTGTGCTATGGCtgacacagacagacagaagaTGT
TAGGTAGGTAGgcagggggggcacgcagttactacaagacatgatgtgta
gtaagtgctttttcaacattttttttcaggaccaccaccctttgcagtta
ctacatcttggtagtaactgttttcagaaaagatttccaggtaccacccc
tgtttttgagtgatatcatcaaaaaaatgctcgaaattaccctaaattgc
gattatttNtttttgagtgatatcatcaaaaaaatgCTCGAAgttaccct
aaattgcgattatttttcaacctaaagccatttttgtgctaaattttctt
ttaatatacttgattaacagctgttgagaacattttaatgataattaggg
aaagcataatttcaaagttgggtctgagaaaaatttcaaattttttttcg
tccatttataacaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtaacaaagaattttttcacaaaaaaattcattt
tttgtgaaaaattttgaaagttctttaaaaagaattaaaatataagcact
tactacaccaaaagtgcgtGTAGtgactgttttcataacttctgaataca
gtaccaccacggtagtaagtgtcatactgtcttgtagtaactgcgtgccc
cccccctggTAGGCAGGTGGAGCTCTAGCTGGAGCTGGCTGGAGCGGAGG
GCTGCACTTTATTCTAAAGATAAACAGTCAGGGAAATTCCTCAATTgtgg
tatactgcaattgcagtagttttcattcgtggttagcctacaaaggctta
taacgactacatatagtgctggtcgacaaagataaacaaacattgACTGT
AAAAAATTGTATGAGTGAGAAGAAAgcttgtaaaaaatattttgtgcgtt
aaaaagatatgatcaactatgtacaaaaattgcctgtcttctccttgaat
cttgaattctgttttatgaatatactgcaattgcggtatataaaaaatat
aaaagtgaTGTTTATACGTGgcaattgcagtaaaaaattactaccgcaat
taagggatttccctgactgataAACCAGAtgtaattaatcgaacagttca
ATTGCCGAACTAATTGAGCTTTGTCAAACTTACTCAAACAACAAAAGTAA
ATTCTTGAATTAAACTTTTTAGAATTTGCTTTaaattgtgagtgttcaat
TAATTTTGACTAAAGATTAAAGGCCATGAGACTCTTATCTTTTTTCAAGG
ATCAATCAAACCTCAGATCGcctaatttttttgcttccgctGACAGAGGC
TGAAAAAGGGTTGctcaatttctttattcaaaattttattcgaactttgt
atttttgaaaaattagtgagtattcgattaaaagTCGACAACCAAAATTA
GTCGAGAATTGATTAAGCTTTGACAACCAAACTTAGTTGAACATTAATTA
TTGGacaacaaagttcgattaggtttgacaaagttcaattaaaaatacag
ttcaattggttcgattaattacgtctagGATAAAGCtataaaaaacatat
ttataTCAGCAGATCTCAAACACTCTGAAAAAGTGGTAAAAGTGACAACT
CTCACCCATTCACGCATTTCCACATTTCTACATTGCCTCACACAATTTTG
ATTTCTCACTTATATTTTGGATTatgagaaaaaattttcgattttcagaa
aaaagtttcCCCGATCTTccgttttttgtaaaaaatttcctgattaatga
tttcaaaaaatcaaagaaatcaggctaaaatttcgaattttgtttCCCAA
TTTTTATCTCATGCAAAATAATCATCTCAAGGTCTAAAAGTGTAAAAATC
ACAATGCCAATAATTTTGttgaagttttgaaaacgaTGAACTTCTTTTAG
TTCCAAAAATGTCACTGAAACTTTTATGACATTTCAATAGACCTTTATTT
ATGTGGTGGATTGTCTGTAGAATAACAAATTACTACCAGCATAATTACAT
AAATTCTTGCCTTCAAACAGCACAAGCAGGatcaataattttctttgaaa
tgaacAGTAGTgctgtaaaagaaaaaatcaattatagatgaagttataat
ttaaGTTAAAATTTATGCTGTGCGTAGTAATTAGTTACCGTGTATACACT
TGCACtgatgttttttaataaaacgaaAAGCTTAAGCCGAAAAATAATtg
tcaaaatgttttttgaatcaaAGTTACCATGAAGGTAAGTTACTCGCCGA
CACAATCGCGGGTAAATGAAACAGTGTggtttgataataaaaaatcatgc
aagatcataaatttcaagatggcgggAATTCAGATGTTTCTTGATGGCTG
CTGGAACCTCAAATTTAATAATGATATTaaacataattatgcatgacatc
TTTTCATGATTAGGAGATATTTATACATTTCACTATCCGCaaattttctt
gtaaatttattttgattcaaCTTTGTATGttatgaccagccaggtcattc
atttgagggctatgcaagtttccttccaaggatgcaagttacccaacttc
acggtatTCAATAGTCTATTGTGAACTCCTAAACAACTCTTGGATTTTTG
tccttttaaaagtttcttctgTTTATTAACCATCAAACCaaaagttggtc
taatgtcgacatttCTAATTCTGACAGTGAGACCCATCTTTAGAGCTGGG
ATTAATAGGAAGATGGGAATTCACTTTCTAccatcaaactaatcaaactt
tttactgacTGATGTTTTGAGtgatttatttgaattttttttttaatttt
tgggttTTCCAGGTATACAACCCCTTATTACCCGGTACAATCTTGATATC
ACCATTGAGAAATGACACACCATCGTTAAGTACCCTGTACTAAAGTCGAT
TTCCCCCTCAAAACAGGTATACCACCCTTTAGTTCTTAGTGATGGTACTT
TCTGGTACACCTCCCCCtcctaaattttctaaaaaacacTGTATTAAAAG
ACATACCACAGCACTCTGTACCGCCCTTAATATCGCGGAAAGAATTCCTG
TCAAGTTAGGTCAAGTCAAATATCATTttgaaaccaattttttttattca
aaagaaataaagtttcaaataaaaaaaaaattataacaagcttgtcaaag
aaatcaaaagaactACAATAAACTAGTCtcgaaaaaaagagaaataagaA
TAACTAGGAAAAAAGTTAAAGATAGTTTTAAAACTGCTCATTCAAAGGTA
AAAATGTAACAACCATCCCAAGAAAATCCTAAGAACTTATAAAGTATACT
ATTGAATTAAAATATAGACTGCCTATAATAAGAAATGGTCCATTGCACCT
CTGCAGTACTCAGCAGTGAAAAAAGGTCCAGAGACTTTATAGGTTTTGAT
CCAAATAGtatcaatattttcataaaagaaTAATAGGGACTCTTAAACAG
TGATCATATTGTTTCAAAAGTAATCAATTCATTGTGGAATGTTCactgta
tttttttaatttgaagcttATTAAGGACCCTAAAATAATATGAAACTGAT
TTTAAAATGCCAAATAAAtaggtgaaaaaataaaagggtacatcttttgt
gattttgtaGGATTTTAAGTACCAGATACTAACTTGATGCCTCATATTTG
GTATTGACACCACTTAGTCCCTTgatacaaatttacaaaaatgttttttc
tcaaTTATGACCACCACTTAGTATCATGTACTAAAttgttttttacttac
cttatcAGACCACCACCCGGCACTGGTCCCCACaacttagtaccgacccc
cccccctgggtttCCCcctaaaaagtgaaattttggaaGATTTAGTTTCC
TGAAGGTAAAATGCCATGGAAAtcgaatgaaaaaaaattgaacctAATGA
TTGAAAAGCTGATGGTTGCTAAggcaaaatgactaaaatttgtgcaaatg
aaaaaaaaatcactttaaaaatgcctaaaaGTACGTTTTCAGCCCAAAAT
CCTTAGATATTAAAAATACATAGGTTCAGGTATATGGATTTAGTCCAGTC
CCAAATTTCACTAGATATCACTGCTAGCTTGTtgactaaaaaaacaaaaa
caattgtgTCAGGGCGATTTCAAGAGTGCGGCTTAGTGAATTTTAGGTCT
TTGATTTTGAAACCTTGCAATAACTTTGAAATAGATCACAGCTAACTTTG
GCATTTCTGAGTACCTTATAATGTGTATTTCCAGGAATATATATGGTTTA
ACCTTTCCAATGCAcaacatattttgaaaaatgtgaagaATTCCAATTAA
AAGCCTTTGTACCTTGAGAGTTAGACATTATTGATCTTGGTACCATtgaa
aaggtatttttataCTCATTCTAAAGGCATTCGATTTCAGGCTAAATTCT
GAGCACTTTTCCCACGTGCCGTTTTTTGATCTAGAAACACCAGTTATTGT
CAGTTACCTTAGTAACACTAAAACATCTTTTTCTGTGTGTGTCTTAAGAC
AAGTTGAGGGCACCCATAGGATCAATAAAAATTCTTAGGAAATCAAGGAA
TATACATTATATGATTACAGGTGAAAGAAATCGAGAAGAGAGATCAAGTA
TTGACAAGTGACAAACAAATTGACAGGTTGACAAAAGCAGGATCAAAATA
TCTTAACTTGAATCCTTACGAGGTGAGTAGTATTTTAGATCCAAAGCAGG
GGCTGTTCTTTCGAAGATTTATCTTGGCTAGCACTTTATAGCTGTCATTG
TTTActattttgatttgttgacCTCCCTAATTAGAAATATATATATCTTC
ATCGTTGTAGGTAATCCTAGACTTTTACCTTGTTTTTCACAATATTATAC
ATATTATTTTGGCATTCTATTTATGGATTTTGAGTACTTTTGGaagaaaa
ttaacaattttattgtttgaaaagtAATGCTACAGCTCAAAGCCTGCATT
GTAAGTAAGATTTATCAAATCATAAAATCAACAACAGCTGTAATAAACAA
CTTTTGGGGCAATTTCACAAAGAAACGCAAAGACCTGTatataaatttat
ataaatttgGTTGTTGACAATTATAATTTATACTCTCTGTCATAGGTTCT
TCAAATTTCACAAGATACAACAGAAGAGGATATGagaaagaaatataaaa
agGTACAAAATCTGTATTGTGAATGTTCTagttttatagatttttggGTT
TGAATACTTGAGAACTAAATCAACTCATCAAAAGTCATGGTAAGATGTTT
CACTTACTGCTTTTAAGATCatagaaatttttaaagagcaAAATGTCACG
TATATTTATTCCAAAACATTTTAACGGTCATTTCTTGTTGTTTGCTTATT
TCTAGCTTTCGATTTTAGTTCATCCAGACAAAAATCCTGATGAAAAAGAA
CGTGCTCAAAAAGCCTTTGATGGTATGGTGATAGAATATATTTCTTACAA
TACTATCATAAAATAAATCTAATCCAAATGATTAAATAACCTTTACTGTT
TAGATCCTTATCTCGTAAAGGTGAATTTTGATCAGACCAATggttgataa
atttattcgaagaAAGAATGTCCCTATAATATACTATATTCTAACTATTA
TTTTATGTATATTCATTGTTCCCAAAACCTTAGAACGAATTGTCTTATAT
TACACTGCTACCTTAATTAGAGCATTTTTTCTGTCTTTTAAAAACTCGAA
ACGGTTCCGAATCTTTAGCCGATGGGGCCCTTACTTACCTGCCATTGACT
GGCTGTTTTTTCTTTAAGACTGTTGATGTTTTCTAATGTTATTTTCAGCT
TTAAAGACTGCAAAGGAAACACTAAGTGACCCTGATCAagtcaaaaagat
caaattatTACTTGAGGAAGCAGCTGCTCTCTTAGAAATGAATGTAAGTG
TTATTGGATGTTGCTGAAGATTTCTTttctacgtcatatcttcctccGTT
TCGATCGTAAAACTCCTAACTCTTTGGGGGTTACTaatggccgcctatag
cagtgcctatagaccaagagtaaggcctaaaagcctggagctatCTCTTG
TGTAGACTAAAGATTTCGCGATAACAAAGACTTTACTCACCAGCTGATAA
ACGATTCTTAGGTTAAACATTTTTATGGAAATCTTTTAGGGCTTGTTTAT
TCTTATTATGTCCTGATTTTCAGGATtagaatgttaaaaaaaaataatct
taATTGTAATGCT

Coding sequence (CDS) from alignment at scaffold_60:1077571..1088583+

>TCONS_00071282 ID=TCONS_00071282|Name=TCONS_00071282|organism=Clytia hemisphaerica|type=CDS|length=1965bp|location=Sequence derived from alignment at scaffold_60:1077571..1088583+ (Clytia hemisphaerica)
atggCTGGCAGCAGCAAAGAAGAtaaatttgaaagtttcatgAAAGATGT
GAAAGAAATCGAGAAGAGAGATCAAGTATTGACAAGTGACAAACAAATTG
ACAGGTTGACAAAAGCAGGATCAAAATATCTTAACTTGAATCCTTACGAG
GTTCTTCAAATTTCACAAGATACAACAGAAGAGGATATGagaaagaaata
taaaaagCTTTCGATTTTAGTTCATCCAGACAAAAATCCTGATGAAAAAG
AACGTGCTCAAAAAGCCTTTGATGCTTTAAAGACTGCAAAGGAAACACTA
AGTGACCCTGATCAagtcaaaaagatcaaattatTACTTGAGGAAGCAGC
TGCTCTCTTAGAAATGAATGTAAGTGTTATTGGATGTTGCTGAatggCTG
GCAGCAGCAAAGAAGAtaaatttgaaagtttcatgAAAGATGTGAAAGAA
ATCGAGAAGAGAGATCAAGTATTGACAAGTGACAAACAAATTGACAGGTT
GACAAAAGCAGGATCAAAATATCTTAACTTGAATCCTTACGAGGTTCTTC
AAATTTCACAAGATACAACAGAAGAGGATATGagaaagaaatataaaaag
CTTTCGATTTTAGTTCATCCAGACAAAAATCCTGATGAAAAAGAACGTGC
TCAAAAAGCCTTTGATGCTTTAAAGACTGCAAAGGAAACACTAAGTGACC
CTGATCAagtcaaaaagatcaaattatTACTTGAGGAAGCAGCTGCTCTC
TTAGAAATGAATGTAAGTGTTATTGGATGTTGCTGAatggCTGGCAGCAG
CAAAGAAGAtaaatttgaaagtttcatgAAAGATGTGAAAGAAATCGAGA
AGAGAGATCAAGTATTGACAAGTGACAAACAAATTGACAGGTTGACAAAA
GCAGGATCAAAATATCTTAACTTGAATCCTTACGAGGTTCTTCAAATTTC
ACAAGATACAACAGAAGAGGATATGagaaagaaatataaaaagCTTTCGA
TTTTAGTTCATCCAGACAAAAATCCTGATGAAAAAGAACGTGCTCAAAAA
GCCTTTGATGCTTTAAAGACTGCAAAGGAAACACTAAGTGACCCTGATCA
agtcaaaaagatcaaattatTACTTGAGGAAGCAGCTGCTCTCTTAGAAA
TGAATGTAAGTGTTATTGGATGTTGCTGAatggCTGGCAGCAGCAAAGAA
GAtaaatttgaaagtttcatgAAAGATGTGAAAGAAATCGAGAAGAGAGA
TCAAGTATTGACAAGTGACAAACAAATTGACAGGTTGACAAAAGCAGGAT
CAAAATATCTTAACTTGAATCCTTACGAGGTTCTTCAAATTTCACAAGAT
ACAACAGAAGAGGATATGagaaagaaatataaaaagCTTTCGATTTTAGT
TCATCCAGACAAAAATCCTGATGAAAAAGAACGTGCTCAAAAAGCCTTTG
ATGCTTTAAAGACTGCAAAGGAAACACTAAGTGACCCTGATCAagtcaaa
aagatcaaattatTACTTGAGGAAGCAGCTGCTCTCTTAGAAATGAATGT
AAGTGTTATTGGATGTTGCTGAatggCTGGCAGCAGCAAAGAAGAtaaat
ttgaaagtttcatgAAAGATGTGAAAGAAATCGAGAAGAGAGATCAAGTA
TTGACAAGTGACAAACAAATTGACAGGTTGACAAAAGCAGGATCAAAATA
TCTTAACTTGAATCCTTACGAGGTTCTTCAAATTTCACAAGATACAACAG
AAGAGGATATGagaaagaaatataaaaagCTTTCGATTTTAGTTCATCCA
GACAAAAATCCTGATGAAAAAGAACGTGCTCAAAAAGCCTTTGATGCTTT
AAAGACTGCAAAGGAAACACTAAGTGACCCTGATCAagtcaaaaagatca
aattatTACTTGAGGAAGCAGCTGCTCTCTTAGAAATGAATGTAAGTGTT
ATTGGATGTTGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044302XLOC_044302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071282-exon-scaffold_60-1491911889:1077571..1077891TCONS_00071282-exon-scaffold_60-1491911889:1077571..1077891Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1510915933:1077571..1077891TCONS_00071282-exon-scaffold_60-1510915933:1077571..1077891Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1575043694:1077571..1077891TCONS_00071282-exon-scaffold_60-1575043694:1077571..1077891Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1491911889:1086941..1087042TCONS_00071282-exon-scaffold_60-1491911889:1086941..1087042Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1510915933:1086941..1087042TCONS_00071282-exon-scaffold_60-1510915933:1086941..1087042Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1575043694:1086941..1087042TCONS_00071282-exon-scaffold_60-1575043694:1086941..1087042Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1491911889:1087466..1087522TCONS_00071282-exon-scaffold_60-1491911889:1087466..1087522Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1510915933:1087466..1087522TCONS_00071282-exon-scaffold_60-1510915933:1087466..1087522Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1575043694:1087466..1087522TCONS_00071282-exon-scaffold_60-1575043694:1087466..1087522Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1491911889:1087726..1087792TCONS_00071282-exon-scaffold_60-1491911889:1087726..1087792Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1510915933:1087726..1087792TCONS_00071282-exon-scaffold_60-1510915933:1087726..1087792Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1575043694:1087726..1087792TCONS_00071282-exon-scaffold_60-1575043694:1087726..1087792Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1491911889:1088169..1088583TCONS_00071282-exon-scaffold_60-1491911889:1088169..1088583Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1510915933:1088169..1088583TCONS_00071282-exon-scaffold_60-1510915933:1088169..1088583Clytia hemisphaericaexon
TCONS_00071282-exon-scaffold_60-1575043694:1088169..1088583TCONS_00071282-exon-scaffold_60-1575043694:1088169..1088583Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071282-proteinTCONS_00071282-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1077571..1088583 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.1955	10.9666	18.2027	23.5445	17.2906	15.1672	19.4606	19.3493	12.2485	12.8924	10.8786	11.2921	8.84717	10.9826	11.1297	11.168	10.2974	12.596	2.78427	6.48409	12.2663	14.5215	18.1004	14.1186	11.7563	15.4818	11.364	11.3714	10.3279	11.1917
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
Blast
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BLAST of TCONS_00071282 vs. Swiss-Prot (Human)
Match: DNJC8 (DnaJ homolog subfamily C member 8 OS=Homo sapiens GN=DNAJC8 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.494e-30
Identity = 56/99 (56.57%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:  301 FESFMKDVKEIEKRDQVLTSDKQIDRLTKAGSKYLNLNPYEVLQISQDTTEEDMRKKYKKLSILVHPDKNPDEKERAQKAFDALKTAKETLSDPDQVKK 597
            F +F  +VK+IEKRD VLTS  QI+RLT+ GS Y NLNP+EVLQI  + T+E+++K++++LSILVHPDKN D+ +RAQKAF+A+  A + L D +Q K+
Sbjct:   20 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKR 118
The following BLAST results are available for this feature:
BLAST of TCONS_00071282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNJC81.494e-3056.57DnaJ homolog subfamily C member 8 OS=Homo sapiens ... [more]
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