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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071277 ID=TCONS_00071277|Name=TCONS_00071277|organism=Clytia hemisphaerica|type=transcript|length=3797bpRun BLAST on NCBI transcript from alignment at scaffold_60:924490..933371+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071277 ID=TCONS_00071277|Name=TCONS_00071277|organism=Clytia hemisphaerica|type=transcript|length=8882bp|location=Sequence derived from alignment at scaffold_60:924490..933371+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071277 vs. Swiss-Prot (Human)
Match: CO6A6 (Collagen alpha-6(VI) chain OS=Homo sapiens GN=COL6A6 PE=1 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 1.086e-36 Identity = 186/757 (24.57%), Postives = 320/757 (42.27%), Query Frame = 3
Query: 24 KVDVGFVLDSSGSLR-NDYDKEKDFLKALAATFGVSDDGARAGVVTFSYYTEHSIKLNDHTSLDTFNEAVDNIKLMGSTTRIDKALRMTQKDMFSIPNGGRPGVNKV---LIVLTDGSQTQDVGAEHPGIVAKELRDKGIRVISIGIGQGINTTELVHIAGGKENMFTAASFDDLISGDFLDKVNAAGCKEAQREPEPTCKVKVDVGFVLDSSGSL-RNDYSKEKDFLKASAAAFGVSDDGARAGVVTFSYYTEHSIKLNDHTKVSTFNDAVDKIALMGSTTRIDKALRMVQKDMFTIANGGRPGVTKVLFVLTDGSQTQDVGAEHPGIVAKELRDKXXXXXXXXXXXXXNTTELVHIAGGKENVFTAATFDDL--ISGDFLDKVTGFACNQAKYSPPEEIRQCDMEALDVVFGIDMS-SRSTQHYPQMNGFLTQFADALSANTKYLNLGALKYGSEAVVTFPYQSKPAADAFSQMVGKLTTVDNGRAVDAALVKAYEAFFKPRHNENGKSAGGYLSADRINEIVSGGKVGLQKVL--TRDGEEINRKRLFVLMVAGKHLDNGLDIIPVHAARLLYDLGIQIMVVAFDDVGD-RVTSIARNQRDVFEMHKGDSMLKFMNE----ICNKFEIKQPQYSRNGPIDVAFLLDSSASMYEA-YPLQAQIAQKIASQYQLSPNGTRASIVIYSNNAQIELLLKDGTSQEAFKQKVDNLPFLGLDTRLDRGLYLARLALFTKKYGARAK--VPKILYIFIDGE 2240
+ D+ ++D SGS + D+ + K FL + F ++ R G V ++ + ++N +++ +A++NI+ MG T AL T + + + NKV L+VLT+G + A LR++ IRV +IGI + N T+L IAG ++ ++ FD L D ++V C E E ++K D+ F++DSSGS+ ++SK K F+K + + D + GVV FS + +LN S ++A+D++A +G TT AL V + F+ G RP + K L ++TDG + QD+ E P +V ++ +I G N T+L I+G E VF FD L I D + + SP EE ++ +E LDVVF ID S S Y M F+ + GALKY + V F D F + ++ + N +A+ + A F + + R+N+ G+ +VL DGE + +L A+ L D GI ++ V D + ++A + F + + ++ +CN ++ +D+ FL+D S S+ + + + + +S N R +S+ E L ++ +++N+ + +T + L F G+R P++L + DG+
Sbjct: 434 EADIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYADSWDLEFEINKYSNKQDLGKAIENIRQMGGNTNTGAALNFT---LSLLQKAKKQRGNKVPCHLVVLTNGMSKDSILEP-----ANRLREEHIRVYAIGIKEA-NQTQLREIAGEEKRVYYVHDFDAL--KDIRNQVVQEICTE-----EACKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMSQSDISNAIDQMAHIGQTTLTGSALSFVSQ-YFSPTKGARPNIRKFLILITDG-EAQDIVKE-PAVVLRQ----EGVIIYSVGVFGSNVTQLEEISGRPEMVFYVENFDILQRIEDDLVFGIC---------SPREECKR--IEVLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLF------YLDDFGTKLEVISVLQNDQAMGGSTYTAEALGFSDHMFTEARGS-------RLNK-------GVPQVLIVITDGESHDADKLNA------------------TAKALRDKGILVLAVGIDGANPVELLAMAGSSDKYFFVETFGGLKGIFSDVTASVCNSSKVD----CEIDKVDLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFSDTYHPEFPLGTFIGEKEISFQIENIKQIFGNTHIGAALREVE-HYFRPDMGSRINTGTPQVLLVLTDGQ 1113 HSP 2 Score: 125.176 bits (313), Expect = 1.431e-28 Identity = 131/389 (33.68%), Postives = 193/389 (49.61%), Query Frame = 3
Query: 3 PEPTCK--AKVDVGFVLDSSGSLRND-YDKEKDFLKALAATFGVSDDGARAGVVTFSYYTEHSIKLNDHTSLDTFNEAVDNIKLMGSTTRIDKALRMTQKDMFSIPNGGR--PGVNKVLIVLTDGSQTQDVGAEHPGIVAKELRDKGIRVISIGIGQGINTTELVHIAGGKENMFTAASFDDLISGDFLDKVNAAGCKEAQREPEPTCKV-KVDVGFVLDSSGSLR-NDYSKEKDFLKASAAAFGVSDDGARAGVVTFS--YYTEHSIKLNDHTKVSTFNDAVDKIALMGSTTRIDKALRMVQK----DMFTIANGGRPGVTKVLFVLTDGSQTQDVGAEHPGIVAKELRDKXXXXXXXXXXXXXNTTELVHIAGGKENVFTAATFDDL 1130
P CK +DV FV+DSSGS+ D Y+ KDF+ L V + R G + ++ E L+D + + N + MG +T +AL + MF+ G R GV +VLIV+TDG ++ D A+ AK LRDKGI V+++GI G N EL+ +AG + F +F L G F D V A+ C ++ + C++ KVD+ F++D S S++ ND+ K K+FL + F VS + R G FS Y+ E + K +F ++ I + T I ALR V+ DM + N G P +VL VLTDG Q+QD A+ A+ LR + I ++ +L+ I G E T FD+L
Sbjct: 798 PREECKRIEVLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDFGTKLEVISVLQNDQAMGGSTYTAEALGFSDH-MFTEARGSRLNKGVPQVLIVITDG-ESHD--ADKLNATAKALRDKGILVLAVGI-DGANPVELLAMAGSSDKYFFVETFGGL-KGIFSD-VTASVCNSSKVD----CEIDKVDLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFSDTYHPEFPLGTFIGEKEISFQ--IENIKQIFGNTHIGAALREVEHYFRPDMGSRINTGTP---QVLLVLTDG-QSQDEVAQ----AAEALRHR-GIDIYSVGIGDVDDQQLIQITGTAEKKLTVHNFDEL 1164 The following BLAST results are available for this feature:
BLAST of TCONS_00071277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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