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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071272 ID=TCONS_00071272|Name=TCONS_00071272|organism=Clytia hemisphaerica|type=transcript|length=3345bpRun BLAST on NCBI transcript from alignment at scaffold_60:923187..933371+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071272 ID=TCONS_00071272|Name=TCONS_00071272|organism=Clytia hemisphaerica|type=transcript|length=10185bp|location=Sequence derived from alignment at scaffold_60:923187..933371+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071272 vs. Swiss-Prot (Human)
Match: CO6A6 (Collagen alpha-6(VI) chain OS=Homo sapiens GN=COL6A6 PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 1.803e-24 Identity = 138/567 (24.34%), Postives = 233/567 (41.09%), Query Frame = 1
Query: 70 KEVLPPEPTCKAKVDVGFVLDSSGSL-RNDYDKEKDFLKALAATFGVSDDGARAGVVTFSYYTEHSIKLNDHTSLDTFNEAVDNIKLMGSTTRIDKALRMTQKDMFSIPNGGRPGVNKVLIVLTDGSQTQDVGAEHPGIVAKELRDKGIRVISIGIGQGINTTELVHIAGGKENVFTAATFDDL--ISGDFLDKVTGFACNQAKYSPPEEIRQCDMEALDVVFGIDMS-SRSTQHYPQMNGFLTQFADALSANTKYLNLGALKYGSEAVVTFPYQSKPAADAFSQMVGKLTTVDNGRAVDAALVKAYEAFFKPRHNENGKSAGGYLSADRINEIVSGGKVGLQKVL--TRDGEEINRKRLFVLMVAGKHLDNGLDIIPVHAARLLYDLGIQIMVVAFDDVGD-RVTSIARNQRDVFEMHKGDSMLKFMNE----ICNKFEIKQPQYSRNGPIDVAFLLDSSASMY-EAYPLQAQIAQKIASQYQLSPNGTRASIVIYSNNAQIELLLKDGTSQEAFKQKVDNLPFLGLDTRLDRGLYLARLALFTKKYGARAK--VPKILYIFIDGE 1728
+E+ E + K D+ F++DSSGS+ ++ K K F+K L + + D + GVV FS + +LN S + A+D + +G TT AL + FS G RP + K LI++TDG + QD+ E P +V LR +G+ + S+G+ G N T+L I+G E VF FD L I D + + SP EE ++ +E LDVVF ID S S Y M F+ + GALKY + V F D F + ++ + N +A+ + A F + + R+N+ G+ +VL DGE + +L A+ L D GI ++ V D + ++A + F + + ++ +CN ++ +D+ FL+D S S+ + + + + +S N R +S+ E L ++ +++N+ + +T + L F G+R P++L + DG+
Sbjct: 608 QEICTEEACKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMSQSDISNAIDQMAHIGQTTLTGSALSFVSQ-YFSPTKGARPNIRKFLILITDG-EAQDIVKE-PAVV---LRQEGVIIYSVGV-FGSNVTQLEEISGRPEMVFYVENFDILQRIEDDLVFGIC---------SPREECKR--IEVLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLF------YLDDFGTKLEVISVLQNDQAMGGSTYTAEALGFSDHMFTEARGS-------RLNK-------GVPQVLIVITDGESHDADKLNA------------------TAKALRDKGILVLAVGIDGANPVELLAMAGSSDKYFFVETFGGLKGIFSDVTASVCNSSKVD----CEIDKVDLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFSDTYHPEFPLGTFIGEKEISFQIENIKQIFGNTHIGAALREVE-HYFRPDMGSRINTGTPQVLLVLTDGQ 1113 The following BLAST results are available for this feature:
BLAST of TCONS_00071272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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