|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071271 ID=TCONS_00071271|Name=TCONS_00071271|organism=Clytia hemisphaerica|type=transcript|length=4040bpRun BLAST on NCBI transcript from alignment at scaffold_60:923086..933371+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071271 ID=TCONS_00071271|Name=TCONS_00071271|organism=Clytia hemisphaerica|type=transcript|length=10286bp|location=Sequence derived from alignment at scaffold_60:923086..933371+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071271 vs. Swiss-Prot (Human)
Match: CO6A6 (Collagen alpha-6(VI) chain OS=Homo sapiens GN=COL6A6 PE=1 SV=2) HSP 1 Score: 157.147 bits (396), Expect = 2.713e-38 Identity = 203/835 (24.31%), Postives = 353/835 (42.28%), Query Frame = 3
Query: 3 KQGINMMTVGIGPGVNSTELARIAGGKKNMY--QAESFDVLIG--KPFLESV------TKAGCEKAKEVLPPEPTCKAKVDVGFVLDSSGSLR-NDYDKEKDFLKALAATFGVSDDGARAGVVTFSYYTEHSIKLNDHTSLDTFNEAVDNIKLMGSTTRIDKALRMTQKDMFSIPNGGRPGVNKV---LIVLTDGSQTQDVGAEHPGIVAKELRDKGIRVISIGIGQGINTTELVHIAGGKENMFTAASFDDLISGDFLDKVNAAGCKEAQREPEPTCKVKVDVGFVLDSSGSL-RNDYSKEKDFLKASAAAFGVSDDGARAGVVTFSYYTEHSIKLNDHTKVSTFNDAVDKIALMGSTTRIDKALRMVQKDMFTIANGGRPGVTKVLFVLTDGSQTQDVGAEHPGIVAKELRDKXXXXXXXXXXXXXNTTELVHIAGGKENVFTAATFDDL--ISGDFLDKVTGFACNQAKYSPPEEIRQCDMEALDVVFGIDMS-SRSTQHYPQMNGFLTQFADALSANTKYLNLGALKYGSEAVVTFPYQSKPAADAFSQMVGKLTTVDNGRAVDAALVKAYEAFFKPRHNENGKSAGGYLSADRINEIVSGGKVGLQKVL--TRDGEEINRKRLFVLMVAGKHLDNGLDIIPVHAARLLYDLGIQIMVVAFDDVGD-RVTSIARNQRDVFEMHKGDSMLKFMNE----ICNKFEIKQPQYSRNGPIDVAFLLDSSASMYEA-YPLQAQIAQKIASQYQLSPNGTRASIVIYSNNAQIELLLKDGTSQEAFKQKVDNLPFLGLDTRLDRGLYLARLALFTKKYGARAK--VPKILYIFIDGE 2423
++G+ + T+GI G + T+L +IA Y + ++F L + FL+ + T + + E L + D+ ++D SGS + D+ + K FL + F ++ R G V ++ + ++N +++ +A++NI+ MG T AL T + + + NKV L+VLT+G + A LR++ IRV +IGI + N T+L IAG ++ ++ FD L D ++V C E E ++K D+ F++DSSGS+ ++SK K F+K + + D + GVV FS + +LN S ++A+D++A +G TT AL V + F+ G RP + K L ++TDG + QD+ E P +V ++ +I G N T+L I+G E VF FD L I D + + SP EE ++ +E LDVVF ID S S Y M F+ + GALKY + V F D F + ++ + N +A+ + A F + + R+N+ G+ +VL DGE + +L A+ L D GI ++ V D + ++A + F + + ++ +CN ++ +D+ FL+D S S+ + + + + +S N R +S+ E L ++ +++N+ + +T + L F G+R P++L + DG+
Sbjct: 357 REGVTIFTLGI-EGASDTQLEKIASHPAEQYVSKLKTFADLAAHNQTFLKKLRNQITHTVSVFSERTETLKSGCVDTEEADIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYADSWDLEFEINKYSNKQDLGKAIENIRQMGGNTNTGAALNFT---LSLLQKAKKQRGNKVPCHLVVLTNGMSKDSILEP-----ANRLREEHIRVYAIGIKEA-NQTQLREIAGEEKRVYYVHDFDAL--KDIRNQVVQEICTE-----EACKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMSQSDISNAIDQMAHIGQTTLTGSALSFVSQ-YFSPTKGARPNIRKFLILITDG-EAQDIVKE-PAVVLRQ----EGVIIYSVGVFGSNVTQLEEISGRPEMVFYVENFDILQRIEDDLVFGIC---------SPREECKR--IEVLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLF------YLDDFGTKLEVISVLQNDQAMGGSTYTAEALGFSDHMFTEARGS-------RLNK-------GVPQVLIVITDGESHDADKLNA------------------TAKALRDKGILVLAVGIDGANPVELLAMAGSSDKYFFVETFGGLKGIFSDVTASVCNSSKVD----CEIDKVDLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFSDTYHPEFPLGTFIGEKEISFQIENIKQIFGNTHIGAALREVE-HYFRPDMGSRINTGTPQVLLVLTDGQ 1113 HSP 2 Score: 136.732 bits (343), Expect = 4.407e-32 Identity = 145/450 (32.22%), Postives = 223/450 (49.56%), Query Frame = 3
Query: 3 KQGINMMTVGIGPGVNSTELARIAGGKKNMYQAESFDVLIGKPFLESVTKAGCEKAKEVLPPEPTCK--AKVDVGFVLDSSGSLRND-YDKEKDFLKALAATFGVSDDGARAGVVTFSYYTEHSIKLNDHTSLDTFNEAVDNIKLMGSTTRIDKALRMTQKDMFSIPNGGR--PGVNKVLIVLTDGSQTQDVGAEHPGIVAKELRDKGIRVISIGIGQGINTTELVHIAGGKENMFTAASFDDLISGDFLDKVNAAGCKEAQREPEPTCKV-KVDVGFVLDSSGSLR-NDYSKEKDFLKASAAAFGVSDDGARAGVVTFS--YYTEHSIKLNDHTKVSTFNDAVDKIALMGSTTRIDKALRMVQK----DMFTIANGGRPGVTKVLFVLTDGSQTQDVGAEHPGIVAKELRDKXXXXXXXXXXXXXNTTELVHIAGGKENVFTAATFDDL 1313
++G+ + +VG+ G N T+L I+G + ++ E+FD+L + + + C P CK +DV FV+DSSGS+ D Y+ KDF+ L V + R G + ++ E L+D + + N + MG +T +AL + MF+ G R GV +VLIV+TDG ++ D A+ AK LRDKGI V+++GI G N EL+ +AG + F +F L G F D V A+ C ++ + C++ KVD+ F++D S S++ ND+ K K+FL + F VS + R G FS Y+ E + K +F ++ I + T I ALR V+ DM + N G P +VL VLTDG Q+QD A+ A+ LR + I ++ +L+ I G E T FD+L
Sbjct: 747 QEGVIIYSVGVF-GSNVTQLEEISGRPEMVFYVENFDIL--QRIEDDLVFGICS-------PREECKRIEVLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDFGTKLEVISVLQNDQAMGGSTYTAEALGFSDH-MFTEARGSRLNKGVPQVLIVITDG-ESHD--ADKLNATAKALRDKGILVLAVGI-DGANPVELLAMAGSSDKYFFVETFGGL-KGIFSD-VTASVCNSSKVD----CEIDKVDLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFSDTYHPEFPLGTFIGEKEISFQ--IENIKQIFGNTHIGAALREVEHYFRPDMGSRINTGTP---QVLLVLTDG-QSQDEVAQ----AAEALRHR-GIDIYSVGIGDVDDQQLIQITGTAEKKLTVHNFDEL 1164 The following BLAST results are available for this feature:
BLAST of TCONS_00071271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.