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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071268 ID=TCONS_00071268|Name=TCONS_00071268|organism=Clytia hemisphaerica|type=transcript|length=546bp
CCTTGGCTGATGTCACATTCCTCTTAGACGGATCATCTAGCGCCGCATCT
TCATTTGGATCATTGAAAGATTTCATCAGCTTTATCTTGTCTCGATTCCG
ATACTTCGCTCGGTTCGGAGTAATCATAGGTGGTGATTCTGCTCAATACA
AAATACCACATAATAATGGACAATCTTTGGACTCGTTGAAGCAATTGATC
ACTAACTTGAAACTGCAACCTGGAAATCGATTGAATCTTGACAAATCTTT
GGAACAAGCTCTAAATGAAATGCAAGGTTCAAGCATGCGTAATGGAGTAC
CTAAAGTCTTTGTTTTATTAACAACTTCAAATCAAAAGCCAACGGGTCAA
GAACTTGAGAAGATTAAACAGATCAGAGCTTTAGGTGGTCGGGTTATCAT
CATTGCTGTCGGTGATCAAGGAGGTTACGATTGGTCGTTCCTTTCCAATC
TCCCGTACGATCAACAATATGCGCATACCATTGCTGACAGCACTGGTTTG
GATGATGCATTTGGTAGAACTATCagtaaacaaatcaaaatggctG Run BLAST on NCBI protein sequence of TCONS_00071268-protein >TCONS_00071268-protein ID=TCONS_00071268-protein|Name=TCONS_00071268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
LADVTFLLDGSSSAASSFGSLKDFISFILSRFRYFARFGVIIGGDSAQYK
IPHNNGQSLDSLKQLITNLKLQPGNRLNLDKSLEQALNEMQGSSMRNGVP
KVFVLLTTSNQKPTGQELEKIKQIRALGGRVIIIAVGDQGGYDWSFLSNL
PYDQQYAHTIADSTGLDDAFGRTISKQIKMA Run BLAST on NCBI transcript from alignment at scaffold_60:920619..921480+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071268 ID=TCONS_00071268|Name=TCONS_00071268|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at scaffold_60:920619..921480+ (Clytia hemisphaerica)
CCTTGGCTGATGTCACATTCCTCTTAGACGGATCATCTAGCGCCGCATCT
TCATTTGGATCATTGAAAGATTTCATCAGCTTTATCTTGTCTCGATTCCG
ATACTTCGCTCGGTTCGGAGTAATCATAGGTGGTGATTCTGCTCAATACA
AAATACCACATAATAATGGACAATCTTTGGACTCGTTGAAGCAATTGATC
ACTAACTTGAAACTGCAACCTGGAAATCGATTGAATCTTGACAAATCTTT
GGAACAAGCTCTAAATGAAATGCAAGGTTCAAGCATGCGTAATGGAGTAC
CTAAAGTCTTTGTTTTATTAACAACTTCAAATCAAAAGCCAACGGGTCAA
GAACTTGAGAAGATTAAACAGATCAGAGCTTTAGGTAAACGAAAATTTTG
TGGCTGCTTTTTTGACGCCTTTGTCTAACTTAAGTTGTCCTGATTTCGAG
ACTTCATCGACGAACTTTAATTTTCAGACAAAGGAACATGCTCAAAATCA
GAGACCAAAGATAGCCTATACAGTCTCTGaaatttatatttcttttgatt
tttcaggaGAAGAATATAATTTCAACGTAGGAACCGTATAAGAACCCTTC
CTTTCCAGTTTTCaaactcttttgaaaatgataaGGCTAAAAATTCAGTT
TGCTCGCTCAAATATCCTTTTAACATTCTACTATCCCCTTTGTATCGCAG
GTGGTCGGGTTATCATCATTGCTGTCGGTGATCAAGGAGGTTACGATTGG
TCGTTCCTTTCCAATCTCCCGTACGATCAACAATATGCGCATACCATTGC
TGACAGCACTGGTTTGGATGATGCATTTGGTAGAACTATCagtaaacaaa
tcaaaatggctG Coding sequence (CDS) from alignment at scaffold_60:920619..921480+ >TCONS_00071268 ID=TCONS_00071268|Name=TCONS_00071268|organism=Clytia hemisphaerica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_60:920619..921480+ (Clytia hemisphaerica)
TTGGCTGATGTCACATTCCTCTTAGACGGATCATCTAGCGCCGCATCTTC
ATTTGGATCATTGAAAGATTTCATCAGCTTTATCTTGTCTCGATTCCGAT
ACTTCGCTCGGTTCGGAGTAATCATAGGTGGTGATTCTGCTCAATACAAA
ATACCACATAATAATGGACAATCTTTGGACTCGTTGAAGCAATTGATCAC
TAACTTGAAACTGCAACCTGGAAATCGATTGAATCTTGACAAATCTTTGG
AACAAGCTCTAAATGAAATGCAAGGTTCAAGCATGCGTAATGGAGTACCT
AAAGTCTTTGTTTTATTAACAACTTCAAATCAAAAGCCAACGGGTCAAGA
ACTTGAGAAGATTAAACAGATCAGAGCTTTAGGTGGTCGGGTTATCATCA
TTGCTGTCGGTGATCAAGGAGGTTACGATTGGTCGTTCCTTTCCAATCTC
CCGTACGATCAACAATATGCGCATACCATTGCTGACAGCACTGGTTTGGA
TGATGCATTTGGTAGAACTATCagtaaacaaatcaaaatggctTTGGCTG
ATGTCACATTCCTCTTAGACGGATCATCTAGCGCCGCATCTTCATTTGGA
TCATTGAAAGATTTCATCAGCTTTATCTTGTCTCGATTCCGATACTTCGC
TCGGTTCGGAGTAATCATAGGTGGTGATTCTGCTCAATACAAAATACCAC
ATAATAATGGACAATCTTTGGACTCGTTGAAGCAATTGATCACTAACTTG
AAACTGCAACCTGGAAATCGATTGAATCTTGACAAATCTTTGGAACAAGC
TCTAAATGAAATGCAAGGTTCAAGCATGCGTAATGGAGTACCTAAAGTCT
TTGTTTTATTAACAACTTCAAATCAAAAGCCAACGGGTCAAGAACTTGAG
AAGATTAAACAGATCAGAGCTTTAGGTGGTCGGGTTATCATCATTGCTGT
CGGTGATCAAGGAGGTTACGATTGGTCGTTCCTTTCCAATCTCCCGTACG
ATCAACAATATGCGCATACCATTGCTGACAGCACTGGTTTGGATGATGCA
TTTGGTAGAACTATCagtaaacaaatcaaaatggct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071268-exon-scaffold_60-1491911889:920619..921002 | TCONS_00071268-exon-scaffold_60-1491911889:920619..921002 | Clytia hemisphaerica | exon |
| TCONS_00071268-exon-scaffold_60-1510915933:920619..921002 | TCONS_00071268-exon-scaffold_60-1510915933:920619..921002 | Clytia hemisphaerica | exon |
| TCONS_00071268-exon-scaffold_60-1575043694:920619..921002 | TCONS_00071268-exon-scaffold_60-1575043694:920619..921002 | Clytia hemisphaerica | exon |
| TCONS_00071268-exon-scaffold_60-1491911889:921319..921480 | TCONS_00071268-exon-scaffold_60-1491911889:921319..921480 | Clytia hemisphaerica | exon |
| TCONS_00071268-exon-scaffold_60-1510915933:921319..921480 | TCONS_00071268-exon-scaffold_60-1510915933:921319..921480 | Clytia hemisphaerica | exon |
| TCONS_00071268-exon-scaffold_60-1575043694:921319..921480 | TCONS_00071268-exon-scaffold_60-1575043694:921319..921480 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:920619..921480 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002035 | VWF_A |
Blast
The following BLAST results are available for this feature:
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