TCONS_00071256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071256
Unique NameTCONS_00071256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071256 ID=TCONS_00071256|Name=TCONS_00071256|organism=Clytia hemisphaerica|type=transcript|length=708bp
CTGTTGTCTTTTTCTCTGTACACAAAATATTACATCCATCAACActttga
aaaaattaacattCTTTGACTTGGACAACTGAAACTTTGGAAGGCAGACT
CAATACACTGGTGGAAAAGCAGATATGgGTCTTCTCAATTTGATAAGAAA
GATGAAGaagaataaaaacaaggaaatgcgTATTCTATTACTTGGTTTGG
ATAATGCTGGAAAAACAACCATTTTGAAGTCATTAGCCTCAGAGGATATT
AGTCATATCACTCCCACGCAGGGTTTCAATATCAAATCAGTTCAATCATC
AGGAATCCTTCTAAACGTATGGGATATCGGAGGTCAAAAAACAATCAGAC
CATATTGGAgaaactattttgaaaatacaGATGTCCTTATATATGTTATT
GATAGCGCTGATCAACAACGATTTGAAGAGTCTGGTTTCcAATTGGCTGA
ACTGCTCGAAGAGGAAAAACTTCAAGGAGTTCCTGTTCTGgtttttgcaa
ataaacaaGATCTGATGAATGCTGCCAAATCAGATGTGATTATGGATACT
ATGTCATTGAATGATATCAAGGATCGACCATGGCAAATACAAGCGTGTTC
AGCTCTCTCTGGTGAAGGTTTATCGCATGGGCTTGATTGGATTCAGAAGA
ACATCAAATCTTGAAAaaTTAACACTACTTACtaaccaaaaattaaaatg
atgAAATG
Run BLAST on NCBI

protein sequence of TCONS_00071256-protein

>TCONS_00071256-protein ID=TCONS_00071256-protein|Name=TCONS_00071256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MGLLNLIRKMKKNKNKEMRILLLGLDNAGKTTILKSLASEDISHITPTQG
FNIKSVQSSGILLNVWDIGGQKTIRPYWRNYFENTDVLIYVIDSADQQRF
EESGFQLAELLEEEKLQGVPVLVFANKQDLMNAAKSDVIMDTMSLNDIKD
RPWQIQACSALSGEGLSHGLDWIQKNIKS
Run BLAST on NCBI

transcript from alignment at scaffold_60:831254..836051+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071256 ID=TCONS_00071256|Name=TCONS_00071256|organism=Clytia hemisphaerica|type=transcript|length=4798bp|location=Sequence derived from alignment at scaffold_60:831254..836051+ (Clytia hemisphaerica)
CTGTTGTCTTTTTCTCTGTACACAAAATATTACATCCATCAACAGCAAGT
GCAGTCTTATATAGTTTGAAGGCTTTATATATATACATTAGGGGTGGTTT
CGGTGGTTTATTGAATAAAATTGGATCGTTGAGCTTTGAATAAAGGGAGT
GGTAGGTCAAAATAAGAATAgtgtaattaaaaaaaattttgttcagaaca
tttttaaaaatgtcataATTGTATATTGGATATCAGGCGGGGGACAGTCA
CTTATTCTACATGGTTATTATAATtattgttgttataaaaatctagcttt
gaaaaaattaacattCTTTGACTTGGACAACTGAAACTTTGGAAGGCAGA
CTCAATACACTGGTGGAAAAGCAGATATGGtaattaaaccttttttttca
aacacctccactggaactttttttttgaaacaacaAAATTGTACTTCCTT
ACCAAAAATGACTTGTACACTGTAAGACATAATTGATTACTAAGATTGTA
TGTATGAACTATTCAAATGGCTTTCAtccaaaaaagtttaaataagtttt
cttcaaatattttgttctttAAAACTTGACGtccatcagaaaaatttaag
tttgcaAATATGTCTGGaattcaaaatctaaaattgaGCAATAAGtcagc
aataaaaatttgactgcttatttttttttactttgtcacaagaaagaaaa
atttagGTCTTTAATTCCAGACAGCTACTAACAAACACAACAAGGGGATC
TGAGTTTTTAGGTGGagtgtattttcatttttcttaggGTCTTCTCAATT
TGATAAGAAAGATGAAGaagaataaaaacaaggaaatgcgTATTCTATTA
CTTGGTTTGGATAATGCTGGAAAAACAACCATTTTGAAGTCATTAGCCTC
AGAGGATATTAGTCATATCACTCCCACGCAGGTAATTAATATTCAGGATT
AGTTTGTTTTATGGCTCCTCTGTTTATAATTATCAACATTATGCAAAAAT
TAGTGTCACAAAAAAATCGTGCACAGTCAGCGGATCTGTGACTTTGATGc
ctgatttaatttttttttttttgaggttAATTATTGAGGTATGTGTTGTT
TCTACCATTTGACATGTTCTGCTTGATAATAATTTTTTGTATTGACTCTA
CATAAATTTTAATCAACAGGGTTTCAATATCAAATCAGTTCAATCATCAG
GAATCCTTCTAAACGTATGGGATATCGGAGGTCAAAAAACAATCAGACCA
TATTGGAgaaactattttgaaaatacaGATGTCCTTGtaatcaagatttt
ttttcatttctactGTAAAATGAATAAATTTAGCAATGGTTTTTAAAATC
TTGAGTTATGGCTTTCATCATTGTATCAtaaaataatctgaaaatattcC
CTGTTCTacctttgaaattaaaaatctgTGAAACcattttttgtcttttg
gtAGACCAGTCAACTGTTTTCAACATTTAGTGGACTAATAATATCTGTAT
TGTGTTCCTTTTTTCAGATATATGTTATTGATAGCGCTGATCAACAACGA
TTTGAAGAGTCTGGTTTCGTAAGATTTGTCACATTTatactttcaaaatt
tatactttcaaaatttaacGCATTCACTGATTACTATGATTTTAACTTTG
ATACAGAAATTTTTTCTTGCgttccttttgtatttttcagtttAAAATCT
ATACAAAATTCAATGTTCCAACGGGTAAATTTTTCGATTCGGACAGTGAA
TGTGTTAATTTTGTTTCAACCATTTTAACACTTTCATCCTTTAACTTTTC
TTCAAGATTTCCATTCTTATTTCATAATTCATCTTGAGAGTAAGCAGAGC
AGAGCTGAGAAATTCattgtatgttttttttttctaaattttagcAATTG
GCTGAACTGCTCGAAGAGGAAAAACTTCAAGGAGTTCCTGTTCTGgtttt
tgcaaataaacaaGATCTGATGAATGCTGCCAAATCAGATGTGGTAAGAA
TTGTTTTGTTTCATAATCTTTCGAGAGAAAACGCGTCAGCTTTCTATCCA
CCTTgtaatcagtcagaaaatatcaAGCACGATAGTCCCAATTGAACCAA
TGCAATCTGAGATTCTGAAATTAGGACATTCCCAGTCATTAAGCATGTAG
TTTAACTTCATCCTTCCACTGGAATGACTGTCGTTTAtccaaaaagattt
tgtctGTACACAATATTTTGGGGCATGATCCTCTTAACCATTCCATAGAA
AATTCAATCATGATTAgccttttttatgaaataggCAAAATTTAACAATT
CAGATGACCTTTGATACACAGCATACTTAAAAATAAAtcctaaatgaaaa
ttgaattctgTAAGGTGGTTgaaatttctttgtttatgGTTTCTAAATCA
CGAGAAGAAAATAGGTTTCAGTTGTGGGttgcaaattttttgaattgtAT
TTCGGGAACTACTGGGCCCCTAAATTTTCTGCACTTTTATCTCTATTATA
GTCTTGAAAacttacaatttttttatacaGATTATGGATACTATGTCATT
GAATGATATCAAGGATCGACCATGGCAAATACAAGCGTGTTCAGCTCTCT
CTGGTGAAGGTTTATCGGTGAGTTGTTTTGGTTTTAGTGTATACNTTCAG
CTCTCTCTGGTGAAGGTTTATCGGTGAGTTGTTTTGGTTTTAGTATATAC
TATTCTGATGCCCTAGGTTGAATCATCTATCATTATCAATCAAAAATTAC
TAGTTTTGTAATGAGAACAGACTAGATTTTGGTAAAAATCTAttaaacaa
attaagaacattcccAGCCAAAGCTTTCAATAAATGTTGATTCTAATTTA
GTCTCTTGTAAGTCGTTTTAAGTCAATAAAGTAAGCATATTAGGATACCT
TTAACtttaaaaatcgcaaaaaactaccTTTATCGAGCTCAGGTTTTTAT
GTTGAAAATGGGTCGAATCAtcaatgtaaaaataatagataaccaactac
ctctagaaggcacttctcccaagagaacaaccatgcttttcctattgaaa
tgagcactctattaaaaagctctgtgtgcagtgcgtgttatgcttttagc
tagattttgacacactttttgacatccactNNTTCTGTTATCTacaaaat
atatgtgtgatttgaaatgcgatatctcacgtatgAAAAGTGTATGAAAG
ttgcatgatacaaaataaacagatgaatgtttatagaacaataatatcta
attaaaaaattccttctgtgaggctgcctataggaaaatacactttttct
aacccaaattttggaaaaatatgcatcacgtgatcgattctgtccaatag
aaggttgcaaatgaagcaagtttttatttaattgcactttttacgatgca
aaatctcattaatatttttacaaccgtaacacggatgttttttgagaatc
aaggtaagttggttatctattatttttacatcgttggtcgGATATACTCA
AATCTTGGGTGTGCGGTTTGTTGGATAATTTTTGCCAATATagcattgat
tttttttcacctttttagCATGGGCTTGATTGGATTCAGAAGAACATCAA
ATCTTGAAAGTATGATGAATTTGAAAACTGCCATAAGTATCTGCCATAAA
CTATGGTGAAACATTGAATCAATCTTTGAAGTCTCCTCTACAGCTCTTTT
AAGAGTTATGACCTTTCTTGTTTTTGCACCTTTTTATTCACTCTTTAGGA
GCCAATTTTCGTTGaccttttttctaagaaatagtTAATATCTATCAACT
TCCATTCGAAATTGCAAATATTTCTCCAAAGCTTTAATTTGATATCTTGG
CAAACATCTAATGTTCTGAAAGTTTGCAGACCGAAATTCTGAAAGAAATT
CCTGAAAGcaacatttctaaaaagttgCATTTTCAGCCACAATTTTTCGA
AGTAATTTCTGTCACTCAGGTCCAATTCGAACTGCAGATCTGATATTAAG
CACTAACAATATTAggaataaaaagattttttaacatGTTTATAGAGGGT
TGCTGCTACGAATTTTTAACTCACGCTATGTTGTTTATTTATATTTAGTA
TCACTTTATACGTTATGTAATTAATTTGGTTAAGAAAGTTTATAGACATC
ATTTTCCAAAAGTTCAAATTCGTCTAGATCAAGTCTCGctcaatttttaa
gattttttccagGTATATAAAATGATAAATCACTTTTGAGATAGTTGTAA
TTTTTGTTGAATagtgaaatgatttttttgtttgtgtagtcttttttaat
ttcgaatttaacaaattgcaaaattttattGATTATTTAAAAGAATAAAT
GTATAAAAACATGTTGGTCTGTTACTGTAGATAACAAGGGAGCATGAATG
AAGTTTCAGTGAAGGTATCTACTTTCATTCAATTCCATTGACTCTGTAAA
AGTCAaccagatttaattttaagtAAAGTTAAACTCTTAataaaagactt
ttttatttaattaagCCCCAAGGTGTTTAAAATGggtttctaaaaaaaat
gaagtAGGTTAGGTCAAACATTCATCTGAATTTTGAAGAATTACATAAAT
TCTGTTCCCCATTTTTTGTATGTAGACAAAATCCAGTTTTCAACCACACC
TgttcttttcaaaattattcTCAAATCTACAGTCATCTTTAGTTGACCAG
AGATTACAGCTTTTAGTAACTTGATTGTTATTTTAtactttctcttttct
ttttagaaTTAACACTACTTACtaaccaaaaattaaaatgatgAAATG

Coding sequence (CDS) from alignment at scaffold_60:831254..836051+

>TCONS_00071256 ID=TCONS_00071256|Name=TCONS_00071256|organism=Clytia hemisphaerica|type=CDS|length=3780bp|location=Sequence derived from alignment at scaffold_60:831254..836051+ (Clytia hemisphaerica)
ATGgGTCTTCTCAATTTGATAAGAAAGATGAAGaagaataaaaacaagga
aatgcgTATTCTATTACTTGGTTTGGATAATGCTGGAAAAACAACCATTT
TGAAGTCATTAGCCTCAGAGGATATTAGTCATATCACTCCCACGCAGGGT
TTCAATATCAAATCAGTTCAATCATCAGGAATCCTTCTAAACGTATGGGA
TATCGGAGGTCAAAAAACAATCAGACCATATTGGAgaaactattttgaaa
atacaGATGTCCTTATATATGTTATTGATAGCGCTGATCAACAACGATTT
GAAGAGTCTGGTTTCcAATTGGCTGAACTGCTCGAAGAGGAAAAACTTCA
AGGAGTTCCTGTTCTGgtttttgcaaataaacaaGATCTGATGAATGCTG
CCAAATCAGATGTGATTATGGATACTATGTCATTGAATGATATCAAGGAT
CGACCATGGCAAATACAAGCGTGTTCAGCTCTCTCTGGTGAAGGTTTATC
GCATGGGCTTGATTGGATTCAGAAGAACATCAAATCTTGAATGgGTCTTC
TCAATTTGATAAGAAAGATGAAGaagaataaaaacaaggaaatgcgTATT
CTATTACTTGGTTTGGATAATGCTGGAAAAACAACCATTTTGAAGTCATT
AGCCTCAGAGGATATTAGTCATATCACTCCCACGCAGGGTTTCAATATCA
AATCAGTTCAATCATCAGGAATCCTTCTAAACGTATGGGATATCGGAGGT
CAAAAAACAATCAGACCATATTGGAgaaactattttgaaaatacaGATGT
CCTTATATATGTTATTGATAGCGCTGATCAACAACGATTTGAAGAGTCTG
GTTTCcAATTGGCTGAACTGCTCGAAGAGGAAAAACTTCAAGGAGTTCCT
GTTCTGgtttttgcaaataaacaaGATCTGATGAATGCTGCCAAATCAGA
TGTGATTATGGATACTATGTCATTGAATGATATCAAGGATCGACCATGGC
AAATACAAGCGTGTTCAGCTCTCTCTGGTGAAGGTTTATCGCATGGGCTT
GATTGGATTCAGAAGAACATCAAATCTTGAATGgGTCTTCTCAATTTGAT
AAGAAAGATGAAGaagaataaaaacaaggaaatgcgTATTCTATTACTTG
GTTTGGATAATGCTGGAAAAACAACCATTTTGAAGTCATTAGCCTCAGAG
GATATTAGTCATATCACTCCCACGCAGGGTTTCAATATCAAATCAGTTCA
ATCATCAGGAATCCTTCTAAACGTATGGGATATCGGAGGTCAAAAAACAA
TCAGACCATATTGGAgaaactattttgaaaatacaGATGTCCTTATATAT
GTTATTGATAGCGCTGATCAACAACGATTTGAAGAGTCTGGTTTCcAATT
GGCTGAACTGCTCGAAGAGGAAAAACTTCAAGGAGTTCCTGTTCTGgttt
ttgcaaataaacaaGATCTGATGAATGCTGCCAAATCAGATGTGATTATG
GATACTATGTCATTGAATGATATCAAGGATCGACCATGGCAAATACAAGC
GTGTTCAGCTCTCTCTGGTGAAGGTTTATCGCATGGGCTTGATTGGATTC
AGAAGAACATCAAATCTTGAATGgGTCTTCTCAATTTGATAAGAAAGATG
AAGaagaataaaaacaaggaaatgcgTATTCTATTACTTGGTTTGGATAA
TGCTGGAAAAACAACCATTTTGAAGTCATTAGCCTCAGAGGATATTAGTC
ATATCACTCCCACGCAGGGTTTCAATATCAAATCAGTTCAATCATCAGGA
ATCCTTCTAAACGTATGGGATATCGGAGGTCAAAAAACAATCAGACCATA
TTGGAgaaactattttgaaaatacaGATGTCCTTATATATGTTATTGATA
GCGCTGATCAACAACGATTTGAAGAGTCTGGTTTCcAATTGGCTGAACTG
CTCGAAGAGGAAAAACTTCAAGGAGTTCCTGTTCTGgtttttgcaaataa
acaaGATCTGATGAATGCTGCCAAATCAGATGTGATTATGGATACTATGT
CATTGAATGATATCAAGGATCGACCATGGCAAATACAAGCGTGTTCAGCT
CTCTCTGGTGAAGGTTTATCGCATGGGCTTGATTGGATTCAGAAGAACAT
CAAATCTTGAATGgGTCTTCTCAATTTGATAAGAAAGATGAAGaagaata
aaaacaaggaaatgcgTATTCTATTACTTGGTTTGGATAATGCTGGAAAA
ACAACCATTTTGAAGTCATTAGCCTCAGAGGATATTAGTCATATCACTCC
CACGCAGGGTTTCAATATCAAATCAGTTCAATCATCAGGAATCCTTCTAA
ACGTATGGGATATCGGAGGTCAAAAAACAATCAGACCATATTGGAgaaac
tattttgaaaatacaGATGTCCTTATATATGTTATTGATAGCGCTGATCA
ACAACGATTTGAAGAGTCTGGTTTCcAATTGGCTGAACTGCTCGAAGAGG
AAAAACTTCAAGGAGTTCCTGTTCTGgtttttgcaaataaacaaGATCTG
ATGAATGCTGCCAAATCAGATGTGATTATGGATACTATGTCATTGAATGA
TATCAAGGATCGACCATGGCAAATACAAGCGTGTTCAGCTCTCTCTGGTG
AAGGTTTATCGCATGGGCTTGATTGGATTCAGAAGAACATCAAATCTTGA
ATGgGTCTTCTCAATTTGATAAGAAAGATGAAGaagaataaaaacaagga
aatgcgTATTCTATTACTTGGTTTGGATAATGCTGGAAAAACAACCATTT
TGAAGTCATTAGCCTCAGAGGATATTAGTCATATCACTCCCACGCAGGGT
TTCAATATCAAATCAGTTCAATCATCAGGAATCCTTCTAAACGTATGGGA
TATCGGAGGTCAAAAAACAATCAGACCATATTGGAgaaactattttgaaa
atacaGATGTCCTTATATATGTTATTGATAGCGCTGATCAACAACGATTT
GAAGAGTCTGGTTTCcAATTGGCTGAACTGCTCGAAGAGGAAAAACTTCA
AGGAGTTCCTGTTCTGgtttttgcaaataaacaaGATCTGATGAATGCTG
CCAAATCAGATGTGATTATGGATACTATGTCATTGAATGATATCAAGGAT
CGACCATGGCAAATACAAGCGTGTTCAGCTCTCTCTGGTGAAGGTTTATC
GCATGGGCTTGATTGGATTCAGAAGAACATCAAATCTTGAATGgGTCTTC
TCAATTTGATAAGAAAGATGAAGaagaataaaaacaaggaaatgcgTATT
CTATTACTTGGTTTGGATAATGCTGGAAAAACAACCATTTTGAAGTCATT
AGCCTCAGAGGATATTAGTCATATCACTCCCACGCAGGGTTTCAATATCA
AATCAGTTCAATCATCAGGAATCCTTCTAAACGTATGGGATATCGGAGGT
CAAAAAACAATCAGACCATATTGGAgaaactattttgaaaatacaGATGT
CCTTATATATGTTATTGATAGCGCTGATCAACAACGATTTGAAGAGTCTG
GTTTCcAATTGGCTGAACTGCTCGAAGAGGAAAAACTTCAAGGAGTTCCT
GTTCTGgtttttgcaaataaacaaGATCTGATGAATGCTGCCAAATCAGA
TGTGATTATGGATACTATGTCATTGAATGATATCAAGGATCGACCATGGC
AAATACAAGCGTGTTCAGCTCTCTCTGGTGAAGGTTTATCGCATGGGCTT
GATTGGATTCAGAAGAACATCAAATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044291XLOC_044291Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071256-proteinTCONS_00071256-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071256-exon-scaffold_60-1491911889:831254..831297TCONS_00071256-exon-scaffold_60-1491911889:831254..831297Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1510915933:831254..831297TCONS_00071256-exon-scaffold_60-1510915933:831254..831297Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1575043694:831254..831297TCONS_00071256-exon-scaffold_60-1575043694:831254..831297Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1491911889:831550..831632TCONS_00071256-exon-scaffold_60-1491911889:831550..831632Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1510915933:831550..831632TCONS_00071256-exon-scaffold_60-1510915933:831550..831632Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1575043694:831550..831632TCONS_00071256-exon-scaffold_60-1575043694:831550..831632Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1491911889:832041..832184TCONS_00071256-exon-scaffold_60-1491911889:832041..832184Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1510915933:832041..832184TCONS_00071256-exon-scaffold_60-1510915933:832041..832184Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1575043694:832041..832184TCONS_00071256-exon-scaffold_60-1575043694:832041..832184Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1491911889:832423..832539TCONS_00071256-exon-scaffold_60-1491911889:832423..832539Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1510915933:832423..832539TCONS_00071256-exon-scaffold_60-1510915933:832423..832539Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1575043694:832423..832539TCONS_00071256-exon-scaffold_60-1575043694:832423..832539Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1491911889:832771..832821TCONS_00071256-exon-scaffold_60-1491911889:832771..832821Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1510915933:832771..832821TCONS_00071256-exon-scaffold_60-1510915933:832771..832821Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1575043694:832771..832821TCONS_00071256-exon-scaffold_60-1575043694:832771..832821Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1491911889:833148..833246TCONS_00071256-exon-scaffold_60-1491911889:833148..833246Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1510915933:833148..833246TCONS_00071256-exon-scaffold_60-1510915933:833148..833246Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1575043694:833148..833246TCONS_00071256-exon-scaffold_60-1575043694:833148..833246Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1491911889:833784..833870TCONS_00071256-exon-scaffold_60-1491911889:833784..833870Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1510915933:833784..833870TCONS_00071256-exon-scaffold_60-1510915933:833784..833870Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1575043694:833784..833870TCONS_00071256-exon-scaffold_60-1575043694:833784..833870Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1491911889:834822..834862TCONS_00071256-exon-scaffold_60-1491911889:834822..834862Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1510915933:834822..834862TCONS_00071256-exon-scaffold_60-1510915933:834822..834862Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1575043694:834822..834862TCONS_00071256-exon-scaffold_60-1575043694:834822..834862Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1491911889:836010..836051TCONS_00071256-exon-scaffold_60-1491911889:836010..836051Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1510915933:836010..836051TCONS_00071256-exon-scaffold_60-1510915933:836010..836051Clytia hemisphaericaexon
TCONS_00071256-exon-scaffold_60-1575043694:836010..836051TCONS_00071256-exon-scaffold_60-1575043694:836010..836051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:831254..836051 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
118.929	125.004	226.469	230.173	142.131	117.609	86.942	88.2076	110.173	97.0081	71.2079	80.1732	38.2749	30.7011	45.5933	49.018	42.4527	50.2144	25.9288	27.6832	30.1403	31.9295	47.5682	45.5516	76.9781	67.8605	48.8257	40.3562	36.0943	36.5116
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00071256 vs. Swiss-Prot (Human)
Match: ARL3 (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 8.511e-74
Identity = 116/161 (72.05%), Postives = 140/161 (86.96%), Query Frame = 2 
Query:  185 LLLGLDNAGKTTILKSLASEDISHITPTQGFNIKSVQSSGILLNVWDIGGQKTIRPYWRNYFENTDVLIYVIDSADQQRFEESGFQXXXXXXXXXXQGVPVLVFANKQDLMNAAKSDVIMDTMSLNDIKDRPWQIQACSALSGEGLSHGLDWIQKNIKS*K 667
            LLLGLDNAGKTT+LK LASEDISHITPTQGFNIKSVQS G  LNVWDIGGQ+ IRPYW+NYFENTD+LIYVIDSAD++RFEE+G +LAELLEEEKL  VPVL+FANKQDL+ AA +  I + ++L+ I+DR WQIQ+CSAL+GEG+  G++W+ KN+ + K
Sbjct:   21 LLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK 181
The following BLAST results are available for this feature:
BLAST of TCONS_00071256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARL38.511e-7472.05ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
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