TCONS_00071254 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071254
Unique Name	TCONS_00071254
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2793

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_60:777082..781975+
coding sequence from alignment at scaffold_60:777082..781975+

transcript sequence

>TCONS_00071254 ID=TCONS_00071254|Name=TCONS_00071254|organism=Clytia hemisphaerica|type=transcript|length=2793bp
ATGCTTTATATTAAAAAGTCCTTATTTGAAATGATCTTTTCTTGCAATTT
TATCCAATATCATGTGTTTATCATCATCAagatatcttttttttaatgat
aacaTGACACTTTTTATACACTCGATGATAGTCATGAGATTTGGATGGCT
GTTAAATATAATATCATCTATAACCTCTATATAATTGTATTGTATACTGC
TGTTAAATCTAGTAAcaaatttgatagaaattcaACAAGAAAAGATGCTT
CTGAAACTAGTGGCACTGCAGTGTTGCCTTTATTTGGCACTCAGCACTCC
GGTATATTTCAAGCCTGATGAGCCATGTTATGATAGAAAATTCGATCTTG
GAAAAGCAGAGAAAGTACTCTCTCCACGTCCACATGAATATGTTAGTATT
GCTGACCTACCAAAAGCATTGGACTGGAGAAATTACAATGGAGTAAACTA
TGCTAGTACCAGTAGAAACCAACATATCCCACAATATTGTGGTTCATGCT
GGGCTCATGGCACAACCAGTGCCATGGCAGATCGAATCAACATCATCAGG
AAAGGAAAGTTTCCGTCAGCTATGTTGTCAGTCCAAAATGTCAATGACTG
CGGAAATGCTGGAACTTGCCATGGCGGTGGCATGATTGGAGTTTATGAGT
ATGCACACAACAAAGGAATTCCTGATGAAACGTGCAACAACTACCAAGCC
ATCGACCAAGACTGTAAACCTTTCAACCAATGCGGAACTTGCACAACTTT
TGGAGAATGCCATGTCATCAAGAACTATACCAAATTCTTTGTATCTGAAT
ACGgaTCTGTTTCTGGACGTGAAAAGATCATGGCTGAAATTGCAACACGT
GGACCTGTTGCATGTGAAATTATGGCAACCGCTGACTTCGAAGACTACAT
CAAAGGCACTTATTCTGAATACCACCTCTTCAACATGGGAAACCATATCA
TTTCCCTTCATGGGTGGGGTGTTGATGAAAATGGCGTTGAATATTGGGTT
GGGCGTAATTCATGGGGTACACCATGGGGAGAGAAAGGATGGTTCAAAAT
CGTGACCAGCTTGTACAAAAATGGAGAAGGAAACCATTACAATTTGGGAA
TTGAAAGTAATTGTGCTTGGGCTGTTCCAATCATCCCAGATAGCTGGAAG
ATCTAAATTAATGTATTTTACTGTATTATGTTGTATTTAGATTCATAAGT
GTCTTTAAAGGGCCCATTTTACTTTGTTTCATTGGGTCTATTCTTTtata
gtttaattttttttgctaatgttaaaaagaatttaaagtGTTTTGTACGT
AggtaattttttccaaattttttaaaagaaataatttgaacCTTTGCTTC
CGTTTTGAATTCTTTCTCTTAATGAGGTCATTGTAGGCAGTTTGAGAAAA
TGAGGAATCAAGAAAAGATTTCGAGCTCGAACTCGTGACAACAAAGTTGT
GTAACGATTACCTCTCTCAAAAAATCACATGAATTATTAAAATTATTCAT
TACGTTATGTAATTTAATTACTTTCATTATCCTTTCAAACTTATACAATC
GAAATCATGATATCTTAatccatttttcttttctctttttacaGACATAT
ACAATAccataagaaaaaataaataaatataacaACAATGAACACTGTAG
GAGCTTTGGTGTTGCTGTTGGTTGCGGTTGCCAATGCAAGACAACACCGC
TACTTTCATGAAAGGGAACCTTGTTACAGACCTGAATTTGATCAAGATGT
TCCTGAATTAGTGTTAACCAAACGTCCACACGAATACGTCGACGTTTCAG
CTCTCCCAAAGGGTTTGGACTGGAGAGATGTCAATGGAACTAACTATGCC
AGTACCACACGTAATCAGCACATCCCACAATATTGTGGTTCTTGTTGGGC
TCATGCAACCACATCAGTGTTGGCCGATCGTTTGAACATATTGAGAAAAG
GAGTATTCCCTTCAGCTTTCTTGTCCGTTCAAAATGTCATCGACTGTGGA
AATGCTGGCACCTGCCACGGTGGTGGTTTCTTACCCGTTTATAAATACGC
GCATGACGAGGGAATCCCTGATGAAACATGCAACAACTACCAAGCTAAGG
ATCAAGACTGTAAACCATTCAACCAATGTGGAACTTGCACAACTTTCGGA
GAATGCCATGTCATCAAGAATTACACTAAATTCCACGTCTCTGAATATGG
ATCAATCCAAGGTCGTGAACAAATGATGGCAGAATTATCAGAGCGTGGCC
CAATCTCTTGTGGTGTCATGGCAACAGAAACATTCGATCAATACACCGGT
GGTGTCTTCATGGAGTATCACGAGGAAAGTGCTATCAATCACGCTATCTC
TGTCCATGGGTGGGGCGTTGATGATAATGGCGTTGAATATTGGATCGGGC
GTAACTCATGGGGCGAACCATGGGGAGAACACGGGTGGTTTAAAGTTCCA
ACAAGTTTATATAAGAATGGAGATGGCAATAAATACAACTTGGGTATCGA
AACTCAATGCTCATGGGCTGTTCCAATCGTACCAAAAGACTGGCAAGTCT
GAGTAGACTAATTCTTTTAGTTGGTAATGCCCACACAAAAACTTATGATA
TATCCTGCTCAAGATGTCTACCTTACTTAATTGTTGTTGTTAAGTTAATT
TTTGCATTAGGaatctttttaaatgtttatcgaaataatttttgtacttg
tttcataaaaaaatgtgtgtaagtcaatcgaattttttgttttcgctagg
attttaacaaaatttgaaaaaaattctgaaatttaaagtcgac

Run BLAST on NCBI

protein sequence of TCONS_00071254-protein

>TCONS_00071254-protein ID=TCONS_00071254-protein|Name=TCONS_00071254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MNTVGALVLLLVAVANARQHRYFHEREPCYRPEFDQDVPELVLTKRPHEY
VDVSALPKGLDWRDVNGTNYASTTRNQHIPQYCGSCWAHATTSVLADRLN
ILRKGVFPSAFLSVQNVIDCGNAGTCHGGGFLPVYKYAHDEGIPDETCNN
YQAKDQDCKPFNQCGTCTTFGECHVIKNYTKFHVSEYGSIQGREQMMAEL
SERGPISCGVMATETFDQYTGGVFMEYHEESAINHAISVHGWGVDDNGVE
YWIGRNSWGEPWGEHGWFKVPTSLYKNGDGNKYNLGIETQCSWAVPIVPK
DWQV

Run BLAST on NCBI

transcript from alignment at scaffold_60:777082..781975+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071254 ID=TCONS_00071254|Name=TCONS_00071254|organism=Clytia hemisphaerica|type=transcript|length=4894bp|location=Sequence derived from alignment at scaffold_60:777082..781975+ (Clytia hemisphaerica)
ATGCTTTATATTAAAAAGTCCTTATTTGAAATGATCTTTTCTTGCAATTT
TATCCAATATCATGTGTTTATCATCATCAagatatcttttttttaatgat
aacaTGACACTTTTTATACACTCGATGATAGTCATGAGATTTGGATGGCT
GTTAAATATAATATCATCTATAACCTCTATATAATTGTATTGTATACTGC
TGTTAAATCTAGTAAcaaatttgatagaaattcaACAAGAAAAGATGCTT
CTGAAACTAGTGGCACTGCAGTGTTGCCTTTATTTGGCACTCAGCACTCC
GGTATATTTCAAGCCTGATGAGCCATGTTATGATAGAAAATTCGATCTTG
GAAAAGCAGAGAAAGTGtaagttgtttttaaatttctttctattgttagt
cttaaaaacatttttcatttttacagatttatttttatttacaaaaagtg
aTTATTCATTTCTGTTTGGCAATTCTTTTTAGACTCTCTCCACGTCCACA
TGAATATGTTAGTATTGCTGACCTACCAAAAGCATTGGACTGGAGAAATT
ACAATGGAGTAAACTATGCTAGTACCAGTAGAAACCAACATATCCCACAA
TATTGTGGTTCATGCTGGGCTCATGGCACAACCAGTGCCATGGCAGATCG
AATCAACATCATCAGGAAAGGAAAGTTTCCGTCAGCTATGTTGTCAGTCC
AAAATGTCAATGACTGCGGTATGTCCGACCTTTGCTTTCATTTCCACTAC
TGGCTTTTAGTTTtaggtgttttttttcaatttgataaaattcaatTTCT
TGATTGAATATCCTTCACTAGAGAATGTCGAATCAATGGGGGTTGTGGCT
GTAGAGAACATTAGAAAGTTCACAATCTTCTTAAGAAAACCCAGCTATGA
TTTCAATCACGCTTATCAAGGGCCTCATTGTTTGACTTTTAGGAAATGCT
GGAACTTGCCATGGCGGTGGCATGATTGGAGTTTATGAGTATGCACACAA
CAAAGGAATTCCTGATGAAACGTGCAACAACTACCAAGCCATCGACCAAG
ACTGTAAACCTTTCAACCAATGCGGAACTTGCACAACTTTTGGAGAATGC
CATGTCATCAAGAACTATACCAAATTCTTTGTATCTGAATACGGTAATTA
TTGTATTTTATAATAGATTTTGGATGCATTTCTCTCACAATTCTTTATAG
ATATTAGCGGGTCTTACTTTGGTTTTTATAATTGGTTGTATTTCTTAACA
AGATTATTTTTGTAGAAACTCATTGTCTTGCTTTTCCACATAATTTCCTG
AATAGAGGTTATTTGACAGACACATTTTAACTTGCAGTAccatgaatttt
tttcataggaTCTGTTTCTGGACGTGAAAAGATCATGGCTGAAATTGCAA
CACGTGGACCTGTTGCATGTGAAATTATGGCAACCGCTGACTTCGAAGAC
TACATCAAAGGCACNTGCATGTGAAATTATGGCAACTGCTGACTTCGAAG
ACTACATCAAAGGCACTTATTCTGAATACCACCTCTTCAACATGGGAAAC
CATATCATTTCCCTTCATGGGTGGGGTGTTGATGAAAATGGCGTTGAATA
TTGGGTTGGGCGTAATTCATGGGGTACACCATGGGGAGAGAAAGGATGGT
TCAAAATCGTGACCAGCTTGTACAAAAATGGAGAAGGAAACCATTACAAT
TTGGGAATTGAAAGTAATTGTGCTTGGGCTGTTCCAATCATCCCAGATAG
CTGGAAGATCTAAATTAATGTATTTTACTGTATTATGTTGTATTTAGATT
CATAAGTGTCTTTAAAGGGCCCATTTTACTTTGTTTCATTGGGTCTATTC
TTTtatagtttaattttttttgctaatgttaaaaagaatttaaagtGTTT
TGTACGTAggtaattttttccaaattttttaaaagaaataatttgaacCT
TTGCTTCCGTTTTGAATTCTTTCTCTTAATGAGGTCATTGTAGGCAGTTT
GAGAAAATGAGGAATCAAGAAAAGATTTCGAGCTCGAACTCGTGACAACA
AAGTTGTGTAACGATTACCTCTCTCAAAAAATCACATGAATTATTAAAAT
TATTCATTACGTTATGTAATTTAATTACTTTCATTATCCTTTCAAACTTA
TACAATCGAAATCATGATATCTTAatccatttttcttttctctttttaca
GACATATACAATAccataagaaaaaataaataaatataacaACAATGAAC
ACTGTAGGAGCTTTGGTGTTGCTGTTGGTTGCGGTTGCCAATGCAAGACA
ACACCGCTACTTTCATGAAAGGGAACCTTGTTACAGACCTGAATTTGATC
AAGATGTTCCTGAATTAGTGTAAGCTAGACTGATTATTAttgatcttttg
ggaatatTATAGAGCTGAAATCTAATTCTGATATGCTAACAatcattaaa
aatttccatggaTTAGCAATACCCTATTGATTTTAATGGGTTCTCACGAT
CTTCATGTTTCTCTGTCCATAGGTTAACCAAACGTCCACACGAATACGTC
GACGTTTCAGCTCTCCCAAAGGGTTTGGACTGGAGAGATGTCAATGGAAC
TAACTATGCCAGTACCACACGTAATCAGCACATCCCACAATATTGTGGTT
CTTGTTGGGCTCATGCAACCACATCAGTGTTGGCCGATCGTTTGAACATA
TTGAGAAAAGGAGTATTCCCTTCAGCTTTCTTGTCCGTTCAAAATGTCAT
CGACTGTGGTAAGAgttatttcttttgaaattctgtcTTTAAATGAACTA
ATCTTGGCGTGAAATAATTTTCTGCGAGTAGCAAAAACCCTTTAAAAGAT
TGAATTTTGCGAGGAACTTATTTTTGACAAGGCAGtaattctttttactt
ttcgtAAATGCGTAAACAGCAGGGTAAATTGGTTcctttttgccttaaaa
tgaGTGACTGAAAACCATATGAAATAACTTGCTTACCGAGGATCTTATTT
TAGTGAAGCAGCAATTTTTAGAGAAGTTATGTAATTTTGACGTAGGATTg
aagaatgaaaattaattagATGAAAAAGATTTGTTCTTGTTTTTCGAATT
GCTGTTTCTAATTATATAATTTTGAATCTtattaatttgtttttcttaac
CCCCCAGGAAATGCTGGCACCTGCCACGGTGGTGGTTTCTTACCCGTTTA
TAAATACGCGCATGACGAGGGAATCCCTGATGAAACATGCAACAACTACC
AAGCTAAGGATCAAGACTGTAAACCATTCAACCAATGTGGAACTTGCACA
ACTTTCGGAGAATGCCATGTCATCAAGAATTACACTAAATTCCACGTCTC
TGAATATGGTGAGCTCATgattttttagacatttttagAGTTAAAGATAC
TGTGCTATTTTTTTCGAACTCAGAAGGAGCTTTTTATGGTTAAAGGCTCT
TTAGTTAAATCACTACCAGGACCTTGCCAATTTCCATTCTTTGTGAACAA
TTGAGGTTCTTCGTTTTTCTGAATGTCTCGcttaatgaatttcttttggt
GTATCTCAGGTTAAAGCCTTGACTATATTGAATTTCGCAAAAGGCAAAAG
TCCATACCCCTGGCAGCAAAGCAAATATCTGCTTTCTAACAGTTTGACTT
TGGTGTTTTCTGACTTGGTctcatttcaagtttttttttattatttgaac
ttATTAGCTGGTCATCGATAATACCCATCATTTTCACTAAACCTTTCTCT
TTTAGGATCAATCCAAGGTCGTGAACAAATGATGGCAGAATTATCAGAGC
GTGGCCCAATCTCTTGTGGTGTCATGGCAACAGAAACATTCGATCAATAC
ACCGGTGGTGTCTTCATGGAGTATCACGAGGTAAACACTCATTGTGTTTT
TCTACTTAATTAAAAAATCAGAACTCTTCATATTGACCTAGAACatagac
aaaatagaaaaaaattcttaacgTTTTGAACTAACGttaaaaaatgacta
aaagtctCTACCCTGAGCATGGACATTCCCTGAGCTTTTAATAGAAATAG
TGGTGTTGGACCTCTAAAAGGTTTTTAGGGATTCAAAAAGAAGTCAGTGG
AATCACAGTGTCACTTCCTTGGGTCGAAAAACCGTTCCTTGTGCACATAG
TTCTCACTTTGATTGGTCCCTGTAATATGTCACGCCAGCAAAAAGTTAGT
ATATCATATCACCAATAAATTCATACTGTTGATGTGGGCGTAGGGCGGCA
TTTGCATACAATAGACTTCTAGCAATTTCCCGAATATTTTGAAATCAAgg
ggtttttttgaaaaataaagaccGTTATATTAGCGACCTAaagtgtgaaa
aaaaattatcactaGTAATAGAATCCTTCTTCCGATTCCTTCACCGACAC
TTATGTTTTTCTCTCTCATTTTTAGGAAAGTGCTATCAATCACGCTATCT
CTGTCCATGGGTGGGGCGTTGATGATAATGGCGTTGAATATTGGATCGGG
CGTAACTCATGGGGCGAACCATGGGGAGAACACGGGTGGTTTAAAGTTCC
AACAAGTTTATATAAGAATGGAGATGGCAATAAATACAACTTGGGTATCG
AAACTCAATGCTCATGGGCTGTTCCAATCGTACCAAAAGACTGGCAAGTC
TGAGTAGACTAATTCTTTTAGTTGGTAATGCCCACACAAAAACTTATGAT
ATATCCTGCTCAAGATGTCTACCTTACTTAATTGTTGTTGTTAAGTTAAT
TTTTGCATTAGGaatctttttaaatgtttatcgaaataatttttgtactt
gtttcataaaaaaatgtgtgtaagtcaatcgaattttttgttttcgctag
gattttaacaaaatttgaaaaaaattctgaaatttaaagtcgac

Coding sequence (CDS) from alignment at scaffold_60:777082..781975+

>TCONS_00071254 ID=TCONS_00071254|Name=TCONS_00071254|organism=Clytia hemisphaerica|type=CDS|length=4575bp|location=Sequence derived from alignment at scaffold_60:777082..781975+ (Clytia hemisphaerica)
ATGAACACTGTAGGAGCTTTGGTGTTGCTGTTGGTTGCGGTTGCCAATGC
AAGACAACACCGCTACTTTCATGAAAGGGAACCTTGTTACAGACCTGAAT
TTGATCAAGATGTTCCTGAATTAGTGTTAACCAAACGTCCACACGAATAC
GTCGACGTTTCAGCTCTCCCAAAGGGTTTGGACTGGAGAGATGTCAATGG
AACTAACTATGCCAGTACCACACGTAATCAGCACATCCCACAATATTGTG
GTTCTTGTTGGGCTCATGCAACCACATCAGTGTTGGCCGATCGTTTGAAC
ATATTGAGAAAAGGAGTATTCCCTTCAGCTTTCTTGTCCGTTCAAAATGT
CATCGACTGTGGAAATGCTGGCACCTGCCACGGTGGTGGTTTCTTACCCG
TTTATAAATACGCGCATGACGAGGGAATCCCTGATGAAACATGCAACAAC
TACCAAGCTAAGGATCAAGACTGTAAACCATTCAACCAATGTGGAACTTG
CACAACTTTCGGAGAATGCCATGTCATCAAGAATTACACTAAATTCCACG
TCTCTGAATATGGATCAATCCAAGGTCGTGAACAAATGATGGCAGAATTA
TCAGAGCGTGGCCCAATCTCTTGTGGTGTCATGGCAACAGAAACATTCGA
TCAATACACCGGTGGTGTCTTCATGGAGTATCACGAGGAAAGTGCTATCA
ATCACGCTATCTCTGTCCATGGGTGGGGCGTTGATGATAATGGCGTTGAA
TATTGGATCGGGCGTAACTCATGGGGCGAACCATGGGGAGAACACGGGTG
GTTTAAAGTTCCAACAAGTTTATATAAGAATGGAGATGGCAATAAATACA
ACTTGGGTATCGAAACTCAATGCTCATGGGCTGTTCCAATCGTACCAAAA
GACTGGCAAGTCTGAATGAACACTGTAGGAGCTTTGGTGTTGCTGTTGGT
TGCGGTTGCCAATGCAAGACAACACCGCTACTTTCATGAAAGGGAACCTT
GTTACAGACCTGAATTTGATCAAGATGTTCCTGAATTAGTGTTAACCAAA
CGTCCACACGAATACGTCGACGTTTCAGCTCTCCCAAAGGGTTTGGACTG
GAGAGATGTCAATGGAACTAACTATGCCAGTACCACACGTAATCAGCACA
TCCCACAATATTGTGGTTCTTGTTGGGCTCATGCAACCACATCAGTGTTG
GCCGATCGTTTGAACATATTGAGAAAAGGAGTATTCCCTTCAGCTTTCTT
GTCCGTTCAAAATGTCATCGACTGTGGAAATGCTGGCACCTGCCACGGTG
GTGGTTTCTTACCCGTTTATAAATACGCGCATGACGAGGGAATCCCTGAT
GAAACATGCAACAACTACCAAGCTAAGGATCAAGACTGTAAACCATTCAA
CCAATGTGGAACTTGCACAACTTTCGGAGAATGCCATGTCATCAAGAATT
ACACTAAATTCCACGTCTCTGAATATGGATCAATCCAAGGTCGTGAACAA
ATGATGGCAGAATTATCAGAGCGTGGCCCAATCTCTTGTGGTGTCATGGC
AACAGAAACATTCGATCAATACACCGGTGGTGTCTTCATGGAGTATCACG
AGGAAAGTGCTATCAATCACGCTATCTCTGTCCATGGGTGGGGCGTTGAT
GATAATGGCGTTGAATATTGGATCGGGCGTAACTCATGGGGCGAACCATG
GGGAGAACACGGGTGGTTTAAAGTTCCAACAAGTTTATATAAGAATGGAG
ATGGCAATAAATACAACTTGGGTATCGAAACTCAATGCTCATGGGCTGTT
CCAATCGTACCAAAAGACTGGCAAGTCTGAATGAACACTGTAGGAGCTTT
GGTGTTGCTGTTGGTTGCGGTTGCCAATGCAAGACAACACCGCTACTTTC
ATGAAAGGGAACCTTGTTACAGACCTGAATTTGATCAAGATGTTCCTGAA
TTAGTGTTAACCAAACGTCCACACGAATACGTCGACGTTTCAGCTCTCCC
AAAGGGTTTGGACTGGAGAGATGTCAATGGAACTAACTATGCCAGTACCA
CACGTAATCAGCACATCCCACAATATTGTGGTTCTTGTTGGGCTCATGCA
ACCACATCAGTGTTGGCCGATCGTTTGAACATATTGAGAAAAGGAGTATT
CCCTTCAGCTTTCTTGTCCGTTCAAAATGTCATCGACTGTGGAAATGCTG
GCACCTGCCACGGTGGTGGTTTCTTACCCGTTTATAAATACGCGCATGAC
GAGGGAATCCCTGATGAAACATGCAACAACTACCAAGCTAAGGATCAAGA
CTGTAAACCATTCAACCAATGTGGAACTTGCACAACTTTCGGAGAATGCC
ATGTCATCAAGAATTACACTAAATTCCACGTCTCTGAATATGGATCAATC
CAAGGTCGTGAACAAATGATGGCAGAATTATCAGAGCGTGGCCCAATCTC
TTGTGGTGTCATGGCAACAGAAACATTCGATCAATACACCGGTGGTGTCT
TCATGGAGTATCACGAGGAAAGTGCTATCAATCACGCTATCTCTGTCCAT
GGGTGGGGCGTTGATGATAATGGCGTTGAATATTGGATCGGGCGTAACTC
ATGGGGCGAACCATGGGGAGAACACGGGTGGTTTAAAGTTCCAACAAGTT
TATATAAGAATGGAGATGGCAATAAATACAACTTGGGTATCGAAACTCAA
TGCTCATGGGCTGTTCCAATCGTACCAAAAGACTGGCAAGTCTGAATGAA
CACTGTAGGAGCTTTGGTGTTGCTGTTGGTTGCGGTTGCCAATGCAAGAC
AACACCGCTACTTTCATGAAAGGGAACCTTGTTACAGACCTGAATTTGAT
CAAGATGTTCCTGAATTAGTGTTAACCAAACGTCCACACGAATACGTCGA
CGTTTCAGCTCTCCCAAAGGGTTTGGACTGGAGAGATGTCAATGGAACTA
ACTATGCCAGTACCACACGTAATCAGCACATCCCACAATATTGTGGTTCT
TGTTGGGCTCATGCAACCACATCAGTGTTGGCCGATCGTTTGAACATATT
GAGAAAAGGAGTATTCCCTTCAGCTTTCTTGTCCGTTCAAAATGTCATCG
ACTGTGGAAATGCTGGCACCTGCCACGGTGGTGGTTTCTTACCCGTTTAT
AAATACGCGCATGACGAGGGAATCCCTGATGAAACATGCAACAACTACCA
AGCTAAGGATCAAGACTGTAAACCATTCAACCAATGTGGAACTTGCACAA
CTTTCGGAGAATGCCATGTCATCAAGAATTACACTAAATTCCACGTCTCT
GAATATGGATCAATCCAAGGTCGTGAACAAATGATGGCAGAATTATCAGA
GCGTGGCCCAATCTCTTGTGGTGTCATGGCAACAGAAACATTCGATCAAT
ACACCGGTGGTGTCTTCATGGAGTATCACGAGGAAAGTGCTATCAATCAC
GCTATCTCTGTCCATGGGTGGGGCGTTGATGATAATGGCGTTGAATATTG
GATCGGGCGTAACTCATGGGGCGAACCATGGGGAGAACACGGGTGGTTTA
AAGTTCCAACAAGTTTATATAAGAATGGAGATGGCAATAAATACAACTTG
GGTATCGAAACTCAATGCTCATGGGCTGTTCCAATCGTACCAAAAGACTG
GCAAGTCTGAATGAACACTGTAGGAGCTTTGGTGTTGCTGTTGGTTGCGG
TTGCCAATGCAAGACAACACCGCTACTTTCATGAAAGGGAACCTTGTTAC
AGACCTGAATTTGATCAAGATGTTCCTGAATTAGTGTTAACCAAACGTCC
ACACGAATACGTCGACGTTTCAGCTCTCCCAAAGGGTTTGGACTGGAGAG
ATGTCAATGGAACTAACTATGCCAGTACCACACGTAATCAGCACATCCCA
CAATATTGTGGTTCTTGTTGGGCTCATGCAACCACATCAGTGTTGGCCGA
TCGTTTGAACATATTGAGAAAAGGAGTATTCCCTTCAGCTTTCTTGTCCG
TTCAAAATGTCATCGACTGTGGAAATGCTGGCACCTGCCACGGTGGTGGT
TTCTTACCCGTTTATAAATACGCGCATGACGAGGGAATCCCTGATGAAAC
ATGCAACAACTACCAAGCTAAGGATCAAGACTGTAAACCATTCAACCAAT
GTGGAACTTGCACAACTTTCGGAGAATGCCATGTCATCAAGAATTACACT
AAATTCCACGTCTCTGAATATGGATCAATCCAAGGTCGTGAACAAATGAT
GGCAGAATTATCAGAGCGTGGCCCAATCTCTTGTGGTGTCATGGCAACAG
AAACATTCGATCAATACACCGGTGGTGTCTTCATGGAGTATCACGAGGAA
AGTGCTATCAATCACGCTATCTCTGTCCATGGGTGGGGCGTTGATGATAA
TGGCGTTGAATATTGGATCGGGCGTAACTCATGGGGCGAACCATGGGGAG
AACACGGGTGGTTTAAAGTTCCAACAAGTTTATATAAGAATGGAGATGGC
AATAAATACAACTTGGGTATCGAAACTCAATGCTCATGGGCTGTTCCAAT
CGTACCAAAAGACTGGCAAGTCTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044290	XLOC_044290	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071254-protein	TCONS_00071254-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:777082..781975 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
252.065	261.936	305.377	308.832	57.5087	45.4442	95.5668	102.127	198.434	171.83	169.828	123.178	77.1864	74.6493	174.214	161.533	166.044	152.843	166.559	215.238	113.95	113.771	184.122	202.358	228.899	245.334	188.3	185.669	562.532	455.722

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000668	Peptidase_C1A_C
IPR025661	Pept_asp_AS

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0008234	cysteine-type peptidase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity

Blast

[Close]

BLAST of TCONS_00071254 vs. Swiss-Prot (Human)
Match: CATZ (Cathepsin Z OS=Homo sapiens GN=CTSZ PE=1 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 7.815e-121
Identity = 173/279 (62.01%), Postives = 206/279 (73.84%), Query Frame = 3

Query: 1701 YFHEREPCYRPEFDQDVPELVLTK--RPHEYVDVSALPKGLDWRDVNGTNYASTTRNQHIPQYCGSCWAHATTSVLADRLNILRKGVFPSAFLSVQNVIDCGNAGTCHGGGFLPVYKYAHDEGIPDETCNNYQAKDQDCKPFNQCGTCTTFGECHVIKNYTKFHVSEYGSIQGREQMMAELSERGPISCGVMATETFDQYTGGVFMEYHEESAINHAISVHGWGVDDNGVEYWIGRNSWGEPWGEHGWFKVPTSLYKNGDGNKYNLGIETQCSWAVPIV 2531
            YF   + CYRP     +  L  +   RPHEY+  + LPK  DWR+V+G NYAS TRNQHIPQYCGSCWAHA+TS +ADR+NI RKG +PS  LSVQNVIDCGNAG+C GG  L V+ YAH  GIPDETCNNYQAKDQ+C  FNQCGTC  F ECH I+NYT + V +YGS+ GRE+MMAE+   GPISCG+MATE    YTGG++ EY + + INH +SV GWG+ D G EYWI RNSWGEPWGE GW ++ TS YK+G G +YNL IE  C++  PIV
Sbjct:   26 YFRRGQTCYRPLRGDGLAPLGRSTYPRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISD-GTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPIV 303

HSP 2 Score: 362.459 bits (929), Expect = 1.280e-116
Identity = 169/280 (60.36%), Postives = 207/280 (73.93%), Query Frame = 2

Query:  302 VYFKPDEPCYD--RKFDLGKAEKVLSPRPHEYVSIADLPKALDWRNYNGVNYASTSRNQHIPQYCGSCWAHGTTSAMADRINIIRKGKFPSAMLSVQNVNDCGNAGTCHGGGMIGVYEYAHNKGIPDETCNNYQAIDQDCKPFNQCGTCTTFGECHVIKNYTKFFVSEYGSVSGREKIMAEIATRGPVACEIMATADFEDYIKGTYSEYHLFNMGNHIISLHGWGVDENGVEYWVGRNSWGTPWGEKGWFKIVTSLYKNGEGNHYNLGIESNCAWAVPII 1135
            +YF+  + CY   R   L    +   PRPHEY+S ADLPK+ DWRN +GVNYAS +RNQHIPQYCGSCWAH +TSAMADRINI RKG +PS +LSVQNV DCGNAG+C GG  + V++YAH  GIPDETCNNYQA DQ+C  FNQCGTC  F ECH I+NYT + V +YGS+SGREK+MAEI   GP++C IMAT    +Y  G Y+EY      NH++S+ GWG+ + G EYW+ RNSWG PWGE+GW +IVTS YK+G+G  YNL IE +C +  PI+
Sbjct:   25 LYFRRGQTCYRPLRGDGLAPLGRSTYPRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISD-GTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPIV 303

The following BLAST results are available for this feature:

BLAST of TCONS_00071254 vs. Swiss-Prot (Human)

BLAST of TCONS_00071254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CATZ	7.815e-121	62.01	Cathepsin Z OS=Homo sapiens GN=CTSZ PE=1 SV=1	[more]

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TCONS_00071254 (transcript) - C. hemisphaerica