TCONS_00071253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071253
Unique NameTCONS_00071253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071253 ID=TCONS_00071253|Name=TCONS_00071253|organism=Clytia hemisphaerica|type=transcript|length=785bp
CAAATTAATTTTATATAGCCATGTAACAATCACATTATGAGATATTTCCA
CCACCTCTAGaataatataaaaattatataaatttaaatgaattatataa
aaaacaccaatcaaactCTAGTTGAGTATAAATTGTTCTTTCAGAAATAC
TAATTAAAGAAAGGGTGTGGTGGCCACCTGAACCGGCATCACAATAGGTC
CATTAAGCCACCAAACCCAGAAGAAtctctacaatttttttctttctact
tAGGCGTCTGCTGGCATAGGAAAAGAGAGGATTCCAATTTATGGAGTATT
GAAGTGTACCATCAAAGAAGGTGGTCTTCGTTCATTGTGGAGAGGTAATT
TCATCAATTGTATGAAAGTTGGACCCGAATCTGCGATTCGATTGTTGACA
TTTGAACAGGTAACGTCTTTTGATTTAGCAGTCCGATTTCCTCCCCATCT
GTTTCTGTGAAAAAAATACGACATGaaataaaaatcatattttttcctcc
cgcaaggcactaagtgatatTGCCAGGGGTAAACTAGAGTGGTTGCCAAA
CCACCCAGTAACCGGTGTCATATTGGCTTTTGGATGGACTCGGTGATGAA
ATACATACTCTGCCACATACATAGGTTGTATCAATAGGCAGTTGATGACT
GGTTGTTTTGGTTGTCTTTACGATTTACATTCGCCATGACACCTGAAAAc
caaaagaataaaataaacaataaaaccACGTAAGACTTAAACAAGGGATT
TTAGGGGGCTATTGCAATCTCTGGTTCGATCATAG
Run BLAST on NCBI

transcript from alignment at scaffold_60:688566..689350+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071253 ID=TCONS_00071253|Name=TCONS_00071253|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at scaffold_60:688566..689350+ (Clytia hemisphaerica)
CAAATTAATTTTATATAGCCATGTAACAATCACATTATGAGATATTTCCA
CCACCTCTAGaataatataaaaattatataaatttaaatgaattatataa
aaaacaccaatcaaactCTAGTTGAGTATAAATTGTTCTTTCAGAAATAC
TAATTAAAGAAAGGGTGTGGTGGCCACCTGAACCGGCATCACAATAGGTC
CATTAAGCCACCAAACCCAGAAGAAtctctacaatttttttctttctact
tAGGCGTCTGCTGGCATAGGAAAAGAGAGGATTCCAATTTATGGAGTATT
GAAGTGTACCATCAAAGAAGGTGGTCTTCGTTCATTGTGGAGAGGTAATT
TCATCAATTGTATGAAAGTTGGACCCGAATCTGCGATTCGATTGTTGACA
TTTGAACAGGTAACGTCTTTTGATTTAGCAGTCCGATTTCCTCCCCATCT
GTTTCTGTGAAAAAAATACGACATGaaataaaaatcatattttttcctcc
cgcaaggcactaagtgatatTGCCAGGGGTAAACTAGAGTGGTTGCCAAA
CCACCCAGTAACCGGTGTCATATTGGCTTTTGGATGGACTCGGTGATGAA
ATACATACTCTGCCACATACATAGGTTGTATCAATAGGCAGTTGATGACT
GGTTGTTTTGGTTGTCTTTACGATTTACATTCGCCATGACACCTGAAAAc
caaaagaataaaataaacaataaaaccACGTAAGACTTAAACAAGGGATT
TTAGGGGGCTATTGCAATCTCTGGTTCGATCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044289XLOC_044289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071253-exon-scaffold_60-1491911889:688566..689350TCONS_00071253-exon-scaffold_60-1491911889:688566..689350Clytia hemisphaericaexon
TCONS_00071253-exon-scaffold_60-1510915933:688566..689350TCONS_00071253-exon-scaffold_60-1510915933:688566..689350Clytia hemisphaericaexon
TCONS_00071253-exon-scaffold_60-1575043694:688566..689350TCONS_00071253-exon-scaffold_60-1575043694:688566..689350Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:688566..689350 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.908159	1.06852	0.209217	0.204686	0.083062	0.276271	0.237564	0.337814	0.103807	0.257163	0.0624023	0.272206	0.0819275	0.109624	0.513263	0.409819	1.53147	3.51223	0.5238	0.41109	0.837972	0.462932	0.751728	0.570767	0.210147	0.721123	0.30932	0.487889	0	0.327294
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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