Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071251 ID=TCONS_00071251|Name=TCONS_00071251|organism=Clytia hemisphaerica|type=transcript|length=6774bpRun BLAST on NCBI transcript from alignment at scaffold_60:687454..704533+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071251 ID=TCONS_00071251|Name=TCONS_00071251|organism=Clytia hemisphaerica|type=transcript|length=17080bp|location=Sequence derived from alignment at scaffold_60:687454..704533+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00071251 vs. Swiss-Prot (Human)
Match: SCMC2 (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1) HSP 1 Score: 293.508 bits (750), Expect = 6.579e-86 Identity = 145/303 (47.85%), Postives = 199/303 (65.68%), Query Frame = 2 Query: 305 IDDQITTSEQNLVWMVWKQLMAGGLGGLVSRTTTAPLDRIKILLQASAGIGKERIPIYGVLKCTIKEGGLRSLWRGNFINCMKVGPESAIRLLTFEQMKLLIGQGESDLEMYQRFVAGSIAGIIAQTSIYPMEVIRTRMAVAKTGVYKNFYDCTKKLKREIGWRGFYKGIIPSLIGIVPNAGIDLCIYETMKQNWLNSFAVKPQRPSFTSTLLAGGMSSLCSMAVCYPFALIRTNLQAETIKPELKGSNEFITMSNSFRDIVKTHGIRGLYRGIVPNMLKVVPACSISYMVYEQARDQLGLHS 1213 + D+ T E+ M W+ L+AGG G VSRT TAPLDR+K+L+Q A + I G I+EGG RSLWRGN IN +K+ PESAI+ + +EQ+K L+G + L +++R VAGS+AG IAQ+SIYPMEV++TRMA+ KTG Y DC +++ G FYKG +P+++GI+P AGIDL +YET+K WL +AV P L G MSS C YP AL+RT +QA+ ++G+ E +TMS+ F+ I++T G GLYRG+ PN +KV+PA SISY+VYE + LG+ S Sbjct: 172 VPDEFTVEERQ-TGMWWRHLVAGGGAGAVSRTCTAPLDRLKVLMQVHAS-RSNNMGIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLVGSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQHYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQA---SIEGAPE-VTMSSLFKHILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITLGVQS 468 The following BLAST results are available for this feature:
BLAST of TCONS_00071251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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