|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071248 ID=TCONS_00071248|Name=TCONS_00071248|organism=Clytia hemisphaerica|type=transcript|length=1470bpRun BLAST on NCBI transcript from alignment at scaffold_60:579568..587675+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071248 ID=TCONS_00071248|Name=TCONS_00071248|organism=Clytia hemisphaerica|type=transcript|length=8108bp|location=Sequence derived from alignment at scaffold_60:579568..587675+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071248 vs. Swiss-Prot (Human)
Match: AVIL (Advillin OS=Homo sapiens GN=AVIL PE=1 SV=3) HSP 1 Score: 209.149 bits (531), Expect = 7.968e-59 Identity = 125/333 (37.54%), Postives = 187/333 (56.16%), Query Frame = 2
Query: 224 GVEIWRINKFKIEKWPIEDYGKFYSGDSYIILNTYKDADEDELNYDLHFWIGKYSTQDEYGTAAYKTVELDTFHNDKPVQHREVQGHESSLFKTYF-ETITLMKGGAATGFRHVKPTEYK-PRLFQVVGERKKIDVLEIPMKKGNVNSDDVFIFDLGLQIYQLNGSNANKDEKFRATQYVQKIKS-ERGGKAKLEVLEEGDTASDHEIFKSLKDGVSRNSVKRRAPPPPT----QKG---MYKLSDASGKLQFSTISTGSLNKSGLDTKDVFLVD-GGSHLYVWVGNGASRAERQNGMVFATKFLQDKKNPLCPVTVMNEKKANKNQVFQALF 1189
G+ +WRI K ++ P+ +G FY GD Y+IL+T + A L+ D+HFWIGK S+QDE AA T +LD + PVQHREVQ HES F+ YF + I +GG A+G +HV+ Y RL V G+R I E+ M + N DVF+ DLG I Q NG +N E+ +A + I+ ERGG+AK+ V+E A+ E+ K L+D + R S+ + P QK +Y +SD++G+L + ++T L + L+ D +++D G+ +YVW G GA++AE+Q M A F++ K P V ++ +F+ LF
Sbjct: 15 GIIVWRIEKMELALVPVSAHGNFYEGDCYVILSTRRVASL--LSQDIHFWIGKDSSQDEQSCAAIYTTQLDDYLGGSPVQHREVQYHESDTFRGYFKQGIIYKQGGVASGMKHVETNTYDVKRLLHVKGKR-NIRATEVEMSWDSFNRGDVFLLDLGKVIIQWNGPESNSGERLKAMLLAKDIRDRERGGRAKIGVIEGDKEAASPELMKVLQDTLGRRSIIKPTVPDEIIDQKQKSTIMLYHISDSAGQLAVTEVATRPLVQDLLNHDDCYILDQSGTKIYVWKGKGATKAEKQAAMSKALGFIKMKSYP-SSTNVETVNDGAESAMFKQLF 343 HSP 2 Score: 104.375 bits (259), Expect = 1.608e-23 Identity = 86/341 (25.22%), Postives = 161/341 (47.21%), Query Frame = 2
Query: 170 KKESAEQEKAWH-GSGQKVGVEIWRINKFKIEKWPIEDYGKFYSGDSYIILNTYKDADEDELNYDLHFWIGKYSTQDEYGTAAYKTVELDTFHNDKPVQHREVQGHESSLFKTYFETITLMKGGAATGFRHVKPTEYKPRLFQVVG-ERKKIDVLEIPMKKGNVNSDDVFIFDLGLQIYQLNGSNANKDEKFRATQYV-------QKIKSERGGKAKLEVLEEGDT--ASDHEIFKSLKDGVSRNSVKRRAPPPPTQKGMYKLSDASGKLQFSTISTGSLNKSGLDTKDVFLVDGGSHLYVWVGNGASRAERQNGMVFATKFLQDK---KNPLCPVTVMNE 1150
K E A QE+ G+G+ VE+WRI ++ + YG FY GD Y++L TY+ + ++ L+ W G++++QDE +AY+ VE+D + VQ R G E F F+ ++ G + + +P + RLFQ+ G ++ +E+P ++NS+DVF+ + Y G ++ DE+ A + + +E A+ L G T A+D + + + D SR +++ S+ +G QF + L+ DV L+D +++W+G A+ E+++ + A ++L ++P P+ ++ +
Sbjct: 380 KPEVAAQERMVDDGNGK---VEVWRIENLELVPVEYQWYGFFYGGDCYLVLYTYEVNGKP--HHILYIWQGRHASQDELAASAYQAVEVDRQFDGAAVQVRVRMGTEPRHFMAIFKGKLVIFEGGTSRKGNAEP-DPPVRLFQIHGNDKSNTKAVEVPAFASSLNSNDVFLLRTQAEHYLWYGKGSSGDERAMAKELASLLCDGSENTVAEGQEPAEFWDLLGGKTPYANDKRLQQEILDVQSR---------------LFECSNKTG--QFVVTEITDFTQDDLNPTDVMLLDTWDQVFLWIGAEANATEKESALATAQQYLHTHPSGRDPDTPILIIKQ 697 The following BLAST results are available for this feature:
BLAST of TCONS_00071248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.