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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071244 ID=TCONS_00071244|Name=TCONS_00071244|organism=Clytia hemisphaerica|type=transcript|length=1377bp
TTCGTGTCTCTTTCAATCTCCGTCTTTCTTCGTTTAAGTTGCAGCTTTTA
TAGCTGTCAACGGAATGTCAATGGAATGTCGTTAGATTTAAATAAAGTAA
CAGATATTGGTCTTGGGCCGCATGGATCTCATTTGTATGTTTGTTGCGGT
TCGAGCATGTTTCAGCATTTGCGTAGTTTTAATCATCGATCGTTATGTGA
TATTGGTCTTGGTAGAGCCATTTTCCGATGGGGTGGCCAGCTGGTATTAA
GCTCCAGCTGACAATATGAACAAAAACGTGATTGGAATTAACAGCCGTTT
TGAGAGGTATGAAAAAACAGCTACAGAGACGGATGAAATAACAAAAGAAC
AACTTCAGCAACTGAAAAGTCTTcaaaagtctaatgaaaaagCTGTTAAG
GGCCTTGAGCCTAAAGTAAATAAAATAGATGCAAAGTTGAAAAAGTTGGA
AGAGAGTAAATGGACTGACAGAGTCAAAATCATGGAAAAGCAACTATCAG
AGGCAATACAGAAAGAAAAGGCATGTAAAACAGAAATTCTCCAACACACG
AAAGATATcgacattttaaaaacattcgcTCTCAAAATGGTCTGGCTTCA
ACATTTCACGTGTTCTCTTCATCAGCAATATCGTCGGCCATCATATTTAA
CAACCCATCTTTTCAAGCACGACTTTGATCAACATGAAGATGTCAAAAAT
TGGTCGTTGGTGAAAGCGGAAAGTACCACATCTAAAAACGATTCGGATTT
CTTGATTTGTTTAGCTAATTTATATAACAACTTTTCTACGATAATATTTC
CAGATACCTATGCCGAAAGATGGCTAAAATTAACGAAAATAATGAGAGAT
GGTGAACTTTTTGCTGGATTAGGAGCTACCATGTTCGTCCGAGTCTACTG
CTTGGCATTATCAAATCACATACAAGTTACCGTTTCAAATGAAGTTTTTA
CATTTAAAGAACCGTGGTATCGACACTCGATATTCGTTGCAACCTTANGT
TTCAAATGAAGTTTTTCCATTTAAAGAACCGTGGTATCGACACTCGATGT
TCGTTACAACCTTAAAATCAAATCCATTTGTTGTAAAGGTTATTGCAAAT
CCACCGAAAACAATACGGCTTCTTCACCCTTTTGTTGAAGAAAAATCAAT
CTTCTAAAAAAATGGTATAACAGAATCTCTGAATGAATTTAAGTTTGATA
CAGAGAGTGGTATGCTTTATGATTATGAAGAGTATCTTTTACAAATTGaa
ttctgaaaaaataaaacatatgTCAACAGACGTTCACCAGTATATGAAAA
ACAAGGTTTTAATTTGGTTTGTTGAAATTTACCTAAAAACAGTATtcatc
aaagaaatcaaaacaattttaaaactg Run BLAST on NCBI protein sequence of TCONS_00071244-protein >TCONS_00071244-protein ID=TCONS_00071244-protein|Name=TCONS_00071244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MNKNVIGINSRFERYEKTATETDEITKEQLQQLKSLQKSNEKAVKGLEPK
VNKIDAKLKKLEESKWTDRVKIMEKQLSEAIQKEKACKTEILQHTKDIDI
LKTFALKMVWLQHFTCSLHQQYRRPSYLTTHLFKHDFDQHEDVKNWSLVK
AESTTSKNDSDFLICLANLYNNFSTIIFPDTYAERWLKLTKIMRDGELFA
GLGATMFVRVYCLALSNHIQVTVSNEVFTFKEPWYRHSIFVATLXFK Run BLAST on NCBI transcript from alignment at scaffold_60:406701..408136+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071244 ID=TCONS_00071244|Name=TCONS_00071244|organism=Clytia hemisphaerica|type=transcript|length=1436bp|location=Sequence derived from alignment at scaffold_60:406701..408136+ (Clytia hemisphaerica)
TTCGTGTCTCTTTCAATCTCCGTCTTTCTTCGTTTAAGTTGCAGCTTTTA
TAGCTGTCAACGGAATGTCAATGGAATGTCGTTAGATTTAAATAAAGTAA
CAGATATTGGTCTTGGGCCGCATGGATCTCATTTGTATGTTTGTTGCGGT
TCGAGCATGTTTCAGCATTTGCGTAGGTTTAATCATCGATCGTTATGTAA
GGTATAATTTCAGCATGTTTCAGCATTTTCGTAAGTTTTAATCATCGATC
GTTATGTGATATTGGTCTTGGTAGAGCCATTTTCCGATGGGGTGGCCAGC
TGGTATTAAGCTCCAGCTGACAATATGAACAAAAACGTGATTGGAATTAA
CAGCCGTTTTGAGAGGTATGAAAAAACAGCTACAGAGACGGATGAAATAA
CAAAAGAACAACTTCAGCAACTGAAAAGTCTTcaaaagtctaatgaaaaa
gCTGTTAAGGGCCTTGAGCCTAAAGTAAATAAAATAGATGCAAAGTTGAA
AAAGTTGGAAGAGAGTAAATGGACTGACAGAGTCAAAATCATGGAAAAGC
AACTATCAGAGGCAATACAGAAAGAAAAGGCATGTAAAACAGAAATTCTC
CAACACACGAAAGATATcgacattttaaaaacattcgcTCTCAAAATGGT
CTGGCTTCAACATTTCACGTGTTCTCTTCATCAGCAATATCGTCGGCCAT
CATATTTAACAACCCATCTTTTCAAGCACGACTTTGATCAACATGAAGAT
GTCAAAAATTGGTCGTTGGTGAAAGCGGAAAGTACCACATCTAAAAACGA
TTCGGATTTCTTGATTTGTTTAGCTAATTTATATAACAACTTTTCTACGA
TAATATTTCCAGATACCTATGCCGAAAGATGGCTAAAATTAACGAAAATA
ATGAGAGATGGTGAACTTTTTGCTGGATTAGGAGCTACCATGTTCGTCCG
AGTCTACTGCTTGGCATTATCAAATCACATACAAGTTACCGTTTCAAATG
AAGTTTTTACATTTAAAGAACCGTGGTATCGACACTCGATATTCGTTGCA
ACCTTANGTTTCAAATGAAGTTTTTCCATTTAAAGAACCGTGGTATCGAC
ACTCGATGTTCGTTACAACCTTAAAATCAAATCCATTTGTTGTAAAGGTT
ATTGCAAATCCACCGAAAACAATACGGCTTCTTCACCCTTTTGTTGAAGA
AAAATCAATCTTCTAAAAAAATGGTATAACAGAATCTCTGAATGAATTTA
AGTTTGATACAGAGAGTGGTATGCTTTATGATTATGAAGAGTATCTTTTA
CAAATTGaattctgaaaaaataaaacatatgTCAACAGACGTTCACCAGT
ATATGAAAAACAAGGTTTTAATTTGGTTTGTTGAAATTTACCTAAAAACA
GTATtcatcaaagaaatcaaaacaattttaaaactg Coding sequence (CDS) from alignment at scaffold_60:406701..408136+ >TCONS_00071244 ID=TCONS_00071244|Name=TCONS_00071244|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_60:406701..408136+ (Clytia hemisphaerica)
ATGAACAAAAACGTGATTGGAATTAACAGCCGTTTTGAGAGGTATGAAAA
AACAGCTACAGAGACGGATGAAATAACAAAAGAACAACTTCAGCAACTGA
AAAGTCTTcaaaagtctaatgaaaaagCTGTTAAGGGCCTTGAGCCTAAA
GTAAATAAAATAGATGCAAAGTTGAAAAAGTTGGAAGAGAGTAAATGGAC
TGACAGAGTCAAAATCATGGAAAAGCAACTATCAGAGGCAATACAGAAAG
AAAAGGCATGTAAAACAGAAATTCTCCAACACACGAAAGATATcgacatt
ttaaaaacattcgcTCTCAAAATGGTCTGGCTTCAACATTTCACGTGTTC
TCTTCATCAGCAATATCGTCGGCCATCATATTTAACAACCCATCTTTTCA
AGCACGACTTTGATCAACATGAAGATGTCAAAAATTGGTCGTTGGTGAAA
GCGGAAAGTACCACATCTAAAAACGATTCGGATTTCTTGATTTGTTTAGC
TAATTTATATAACAACTTTTCTACGATAATATTTCCAGATACCTATGCCG
AAAGATGGCTAAAATTAACGAAAATAATGAGAGATGGTGAACTTTTTGCT
GGATTAGGAGCTACCATGTTCGTCCGAGTCTACTGCTTGGCATTATCAAA
TCACATACAAGTTACCGTTTCAAATGAAGTTTTTACATTTAAAGAACCGT
GGTATCGACACTCGATATTCGTTGCAACCTTANGTTTCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071244-exon-scaffold_60-1491911889:406701..406876 | TCONS_00071244-exon-scaffold_60-1491911889:406701..406876 | Clytia hemisphaerica | exon |
| TCONS_00071244-exon-scaffold_60-1510915933:406701..406876 | TCONS_00071244-exon-scaffold_60-1510915933:406701..406876 | Clytia hemisphaerica | exon |
| TCONS_00071244-exon-scaffold_60-1575043694:406701..406876 | TCONS_00071244-exon-scaffold_60-1575043694:406701..406876 | Clytia hemisphaerica | exon |
| TCONS_00071244-exon-scaffold_60-1491911889:406936..408136 | TCONS_00071244-exon-scaffold_60-1491911889:406936..408136 | Clytia hemisphaerica | exon |
| TCONS_00071244-exon-scaffold_60-1510915933:406936..408136 | TCONS_00071244-exon-scaffold_60-1510915933:406936..408136 | Clytia hemisphaerica | exon |
| TCONS_00071244-exon-scaffold_60-1575043694:406936..408136 | TCONS_00071244-exon-scaffold_60-1575043694:406936..408136 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:406701..408136 + |
Blast
The following BLAST results are available for this feature:
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