TCONS_00071243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071243
Unique NameTCONS_00071243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071243 ID=TCONS_00071243|Name=TCONS_00071243|organism=Clytia hemisphaerica|type=transcript|length=1444bp
tgtgtgtgtgtgtgtggttGTTTGTGTTGATGCATGCTTCAAGAGAAGGA
AAAGCAGTGGAAAGATACATCACAATAAATATAAGTTAAATTCATAAGGA
GGATGGCTTCAAACAGCAAATTCACCAATGATGATTTCCAAAAATCAACA
AGCTCACAAAATCAGGATGGAAATAAATGCTCAATTTGCTTGAATCAAAT
CAAGGAAGATATCCACAAGCAACTAAGTGGAAAATGTCAAATCTGTTTGG
ACAAAATCAAAGCTGTTCCTTCTGGTTTCCCATTTGTATTAGCTGGTGAA
GAAATCAACGAATTTGAATGTCCAATCTGTTCATTATTGATTCGAAACGC
TACGGAATTGAAATGTGAACATCTTTTCTGTGAAGATTGCTTAACCTATT
ATGAAAAGGACCAGTTGAACAAAGACGGGGATGCAAAATTCTTTTGTCCA
GTTTGCCAAGCTGAATACAAATCAAAAGAGAAATTCAACGTTCGATCAAC
CGATAAGGTCATACAANtctactttttccccaaattttccaaaaataggc
accctacgagggactgatttttctattttggtgtttttgcgaccctacct
gggactcgtggaggttgaaaacggtaccctgaccagcggagcatccccgt
aacccattttgccctagtacccccccNTGTTTACAAAAGGAATGCGAATG
GACAGGCTGTATCAAAGACTACAAGAACCATAGCAAGAAGTGTGAATTTT
TAGAAGTAGAATGTCCAAACAAAGGTTGCATATACCAAGTTAACGCCAAA
GAAATGGAAGAACATCTCAGAGTTTGTTTTTACCGTCAAGTAGAATGTGA
ATACTGTAACAAAGAATGCTCTTTCACCCAGTTGAAGGAGCATTACAATA
ACTGCGAAGGATATCCGATACCTTGCAACAATTTAGGATGTCCTGATAAT
ATTCAGAGATCTTTGATGGAAAATCATTTAGAGAATTGTGAGTTCGCGAT
TGTTTCTTGTCCCTTTCTTGCATTTGGTTGCACAGAAAAGATTCAACGAC
GTGACATAGAGGATCATAATGGAAAAGCAAAATCGTCACACGACACTCTT
CTCTTCCAAATGGTTAACAAAATGAAACACGAAAATATAGAGAGAGATCA
AAAGATTCAACAACAAGACCAAAGAATTGAAGAGTTGGAAAATATCGTCA
CAAAAAACGAAGAGGAAATCAAGGAGCTTCAAAACAACTCAATGCAACAA
AAAGCTAGCATTACCAAAGATCTTCTAGCACTTGCCGATAAAAATCAATC
AATTGAAGACtctttaatcaaaacaaactcaaTGACTTCCAATATTGTAG
ACTGGGCTAACAAAGGGGGAGACGGCTCAGCGGAGAGATCAGTAATTTAA
GACTGTATATGGTTTCGTACCATCGATTAACTTATATTCTCAAT
Run BLAST on NCBI

protein sequence of TCONS_00071243-protein

>TCONS_00071243-protein ID=TCONS_00071243-protein|Name=TCONS_00071243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MEEHLRVCFYRQVECEYCNKECSFTQLKEHYNNCEGYPIPCNNLGCPDNI
QRSLMENHLENCEFAIVSCPFLAFGCTEKIQRRDIEDHNGKAKSSHDTLL
FQMVNKMKHENIERDQKIQQQDQRIEELENIVTKNEEEIKELQNNSMQQK
ASITKDLLALADKNQSIEDSLIKTNSMTSNIVDWANKGGDGSAERSVI
Run BLAST on NCBI

transcript from alignment at scaffold_60:398312..406184+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071243 ID=TCONS_00071243|Name=TCONS_00071243|organism=Clytia hemisphaerica|type=transcript|length=7873bp|location=Sequence derived from alignment at scaffold_60:398312..406184+ (Clytia hemisphaerica)
tgtgtgtgtgtgtgtggttGTTTGTGTTGATGCATGCTTCAAGAGAAGGA
AAAGCAGTGGAAAGATACATCACAATAAATATAAGTTAAATTCATAAGGT
ATATCATGTATACATTATAGATCCTTAGTTACAATATGTTAACCTGATAT
CAGATCGCGATTGTTTTCTGAGGCTCTAAAGGGATGGATGAAAGCAAACG
ATCTGACGGATATGCGATCTCGAATTTGTATGCTGGCCCGGCGGTAGCAA
AGATACCtatgattttttaatttaaagtttttgtttaGTAATTAGTTCTT
GATTTGTGATTCGATTTTAGCTACATAATGTGAAAggcctatttttcaaa
aatttatagcCCTTTCTTAACATAATGGCGNATGTGAAAggcctattttt
caaaaatttatagcCCGTTCTTAACATAATGGCGCAAAACAACATTCTTG
TTATTGAATTTACTATTTGTCTTAGATGGTTAACTTCCAAGcccctttag
aggtttaccgtacGCTTAAAAAAATATGgtcatctgttatcaggttacat
tATGCTTATCTGATAGCTGATGTTTATACTGTTCCATCCATGACTCCATT
TATTTGTGTACGGTACATACTTCTATTGATATTAGGAGGATGGCTTCAAA
CAGCAAATTCACCAATGATGATTTCCAAAAATCAACAAGCTCACAAAATC
AGGATGGAAATAAATGCTCAATTTGCTTGAATCAAATCAAGGAAGATATC
CACAAGCAACTAAGTGGAAAATGTCAAATCTGTTTGGACAAAATCAAAGC
TGTTCCTTCTGGTTTCCCATTTGTATTAGCTGGTGAAGAAATCAACGAAT
TTGAATGTCCAATCTGTTCATTATTGATTCGAAACGCTACGGAATTGAAA
TGTGAACATCTTTTCTGTGAAGATTGCTTAACCTATTATGAAAAGGACCA
GTTGAACAAAGACGGGTAAATCTACAGAAGTTTTTATGTTTTGCTAGGTT
TAGGGGAGACCCCATACCCAAATGCGTATTTTTGTCGACGTCTTCAAAAT
GTGCTTTTTGATACGAAAAATGGGAATAGTATCAGGACCAGAGGCAATTA
GTAGGGCTGGGTTTAGGTTGAGTTAGGGAATGGTCATGGGCTTGGGAGCG
GGTTATAAAAGTAAACGTTTGAATTCTAGAggcgaaaaaagaaaattgaa
tgtTTGCTTCCATTAAGTTATGTATAAACTTAACAATGCAAGAAAACCTC
CACAAGGAGTTTATCCTGAACTATGCGAACAAGATTTACCTAACCCTTAC
TTATgctagaaaacaaaaaatgtgaGTGGGATTCGCGTAGTTTATTTTTG
CTACTTTCATTTGGGGTGAATTTCAGGACCATTTCCAGTTGGATGAGTAC
CTCTagttctgtgaaaatttcttcgatttcgaaagcttttcaaggggttA
AGACTTCTCTCTGGCTCACAGGATTGAGGAGGTTAAGATATGTTATTCAC
TCTCCAAACTATGTTATCACTAGactaattaatcatgtcagagggtgGGA
ACATAAAGACGGCGGTCGTTTGCTTAAATAGGAGCTgggtaggagaacga
gcaaaatttggtgagaggctgcttaTTAATTAAGCTTGCCGCCGACAAAT
TTTCCTcttacgcttacctaactcctacgctcacttttcccgcgtgatac
cgttccagaccgactggcgtgccagtctacctTACTACCTGGCCAGACAG
CcctcactttttaaaaaataacacAAACATTTCTAATCTTACACttatta
ttgttattgattTGTTTTAGGGATGCAAAATTCTTTTGTCCAGTTTGCCA
AGCTGAATACAAATCAAAAGAGGTAGGACTCTGTGTTATGTATCTATTGG
ACTTGTGTATATATGTGATTGTATTTTAAAAGACTTAAGACTTCTAAGTG
CTCCGGATATACCAAGCCCTAGAATTCTCCAACATGGCTCATGACTTATT
ACTGCTTGTAATAATACCGTGAGCATAAAAGCGGAGACGGACTGTAAGAA
TTTTATCGtgtattattatccatatagcggtcattaagtaagccattaaa
gattcgagcggcgggcggtattgaaaggttctatgactcaaatagtcata
cccgcgctgagaaaactaaggcgtcgtgcttcagagggctgaaatatcat
taaccgccctggttatagggcgataacgtcatATGCGGCCCGCTCAGAGc
tttattgaagtcgttgcattgaagtggtgagactaaaccgacgtcagaaa
aaaaaacttttttggtcatttgcggcccgctcgcaagggtacagcacctg
accccgaaaatgcagtaaaccccgagaatgtaggtttctcattttttagc
attgtagccctaacgatagttcaacttcataaaaagttgttttagagcat
actgttacatattactgattatttctagacataaaattttaacttgaatt
gattttttcaggccaaaatctgaatcgaagttgattggatactactcgaa
ttgagacattttttacataaatcctctctaaatcgaaatctattggaatt
aagttatgatgatagggtattttcttattcctaatgaactaaggaaatgt
gaaaaatagtccatttcaatatttattgttctaagttagatattttaacg
aaaatgtttgacctaccttttggggttagttgacctacaatttgggacat
cttcataacccgacataaaaagtctgtcaaattataaaaagcttttttgt
tttcttttcataacatgaaagtattacctgagagatgattaatgttggta
ttttaagcttttacgacgtgtcccagacccgctgggaccccagcccaatc
agaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGCTCTcagcaaccgaatct
tttcacctacattctgggggttaaaaagcgaaaaaatccaattttcagaa
taacaaaagctctttagaatattgttttggcataagatatttctaaaatt
tcctgttataattaattcagtcgaaaaaatatcaacattttactattact
agatttaaagccataaaaccaaacctacattctgggggttataacgaaaa
ttggagtcaacttcaaggaccaaaaaaattagactatctatcaaaagtaa
tgaaacaaacccctgggaaaggattttgggacttgggagttcaaaatttc
gtttaaaacattcaatatttttttaaatgcaaatctacatctctcaggtc
tgattcaaatttcacctacattctcggggtcaggtgctgtactcaaaact
tgttgaagtcattgcattgaagcgaaaagacttggatgacgctagaaaaa
aacgttgtttgaatttccgatattaagcagatattcgacaagaaaaatcg
gatatcgaaaattattcagtcgagcttgatgatattcgacgaagcgaagc
tgagtttaatttcgatatccgatttttcacgTTGAATATATGGTTTATCG
TTCACAAATTAGAAGAAAAGCATTTAAATGTTCTATTTCATTCggtcttt
ctctctttttatgacattttcgaacgttttactatCTTATAAGgatgtca
atttcattgtttttttctctttaactctttaattacaaaacgttcgaatt
tcctttctcttttgttGAAAGGACCTTTCtgtttatgtttttatatatgt
gacatttaaataattatttgatcaaTAGACTATTTTCTTTATGCTCGCTG
CTAAAGAAGAGATATTTTGCtatcggatatctaaaaatattcgacagtGC
GTTTTGCCTAGAGGTGGACGATAAGGATAATAAAagtaatagcgttaagc
tttcgttcgttgttgtcattaattctgcccttgcagttttattattagcc
ctctagtgccatttgctccctccgcttcgcgtcgggcccaaatgacactc
tcgggctaataatcaaccacctcaaactgaacgctattgttatatttttt
ctcAATCTATAAATAAGTTTCAATTTCTCTGAAGTGATATACAAATATGC
ATGTTGTATTCTGAGATTACACTATTTCATTGAATCTTTTCTACGTTTCT
AACTCGTTATTTGATTGGTACGGCTTTCATCAAAGATCCTGGATGATTAC
AACGGTTACTTTTTGTTCTCGCTGAATGAAATCGAGATTTGTCGTCACAG
TGTTATATTCATACGCTATGACACCCACAGTATCTAAATTGCGCACACAC
AATactaataattatttttttaagaattagaATAAGTTTTATTTTAATCC
GGGCAGTGTTAAAAAATTAGACCGGCATGGGTCGCGACTCTTCTAGTTTC
AAACCTACCGGTACATGACCAAAGAATTGGACGATCTCATCATACGATGT
CAGTGGCTTTTAATGGGTTAATTTAGCTGGTGTTATCAAGTTATACTTTT
ACGTTTTTACTTTAGAAATTCAACGTTCGATCAACCGATAAGGTCATACA
ANtctactttttccccaaattttccaaaaataggcaccctacgagggact
gatttttctattttggtgtttttgcgaccctacctgggactcgtggaggt
tgaaaacggtaccctgaccagcggagcatccccgtaacccattttgccct
agtacccccccNTGTTTACAAAAGGAATGCGAATGGACAGGCTGTATCAA
AGACTACAAGGTAACGAAATACGATGATCTTCTGGTTGAGAGGGGGCACA
CAGTAGATGAGCCAATTGGAGCAAACTGCGCATGCGTTCTTTTAAATCGT
TAGTGGTTAAATAGCGGAAAGAACTAAGGGGAATGAATACGTAGGGGTAG
GGTTGTGAATGgcaaaatatgtcgttctttattgtcattttttcgttttt
tgtcgtttttcttCGTTTCTCGTTTTTTCTTCGTTCTTTCATAGTCTCTT
TATGGTGGTCTCATTTTGGCACTTCCACTCCCTCGGGACACCTTTTGGTC
ATCTGTATATCCGTCGGGTCAAATACTTAGAAAAGTCCGTCATTTCCAGT
ATGTATTGCAAACTTGCCGAGAGGAAGTATCTCTATTAATATGGTATTCT
AAGGCTCAATGGGCAAAACTGTGTGATATAGAATTATAGCTTACTAAACA
AATCAATGATATAGTTCGGGGGCAAAATGAATATCAAGAGTCATTTGATA
AATTTATGAATGGATATTATTGATAGTATTCAAGTATACTATATGAAAAT
AAGCTTTCGGATTATAGTGCCAAATCTTGGTTTTCCTTTTTGTAGAACCA
TAGCAAGAAGTGTGAATTTTTAGAAGTAGAATGTCCAAACAAAGGTTGCA
TATACCAAGTTAACGCCAAAGAAATGGAAGAACATCTCAGAGTTTGTTTT
TACCGTCAAGTAGAATGTGAATACTGTAACAAAGAATGCTCTTTCACCCA
GTTGAAGGTAAGGATATAGATGTTTTGGCGAACGCGatagtcttttgaat
aactaattactccacatacattactttctctcaaccaataaaaacatgat
aaattatcttgtctctaggtaactgttgtggagtaatgagttattcaaaa
gaccgtcGCGTTTACCAAAACAACTATTAGATGACTTCGAGAGGTGTATA
TGATGCTTTGGAATAATGCTGTTAAGCACAAACCTTAACCTTGTCCCttt
gtatcccaggctttatttacgcttctgatggacgccagagaataatGCAC
AAACCTGTAATCCTGGTGaattaaaatatatttggatttctgGGTTAGAT
TTCGTCCTCTATCAGAATCTATCAAATAAAGAGCTTATCTGATATTCGAA
TAGCGGATCGGCCACGCAAAGGCAACGCTCCAAAGGAGTGGGCGAGTTCG
GCTTCCCACTTTATTTCACAGCATATTTCCATTTAGGAGGATTAATATAA
CCGCCCTTTTCGTTTTAGGAGCATTACAATAACTGCGAAGGATATCCGAT
ACCTTGCAACAATTTAGGATGTCCTGATAATATTCAGAGATCTTTGGTAT
ACCTTTTAATTATATCAGTGAACCGTAACCGATTCAGTTTGAAAGTCGTG
TTATTTCAAAataggttttttttattttatccaaAACTTTTTAATGTTCA
TTCTAATGTTTTTGCATCTCCAGTCAGTCTGatgaatatatttatttcaC
TAGATGGAAAATCATTTAGAGAATTGTGAGTTCGCGATTGTTTCTTGTCC
CTTTCTTGCATTTGGTTGCACAGAAAAGGTAggcatttttattcatttgt
tatgatttttgctttaaattttgctttgatCTCTCACCATACGACATCCA
CGTGTCACAGACCACCCGGTGAGTGTAGACTCCGCTGGAAAACTTCTCGg
ttaagttatggcatgtcttaaaactACCATAATTTTTAGCGCATTAACTG
acagaaaacgaccaaacaaatcaatgactgaacatgaagggtaccatgat
gtagtttctaacctgatgtgtaaccttattgttttttcgctggttttcgc
gaaaaaccgcaataactgattatgacgtcataatcgatgacgtcataaaa
actaaaaattgaatttctcaaggattgtttatccaattgtcttcaaactt
tcaccaaaggtGTATCCTACTTAAGTCaatcatttgaagaaaaaaaatca
gtttttgcggatttttgcgaaaatcagcgaaaaaacaattagtaCCCTTC
GTGTTCAGCCATttatttggtcattttctgtcggctaatgcaatctaaaa
attatggtaatattcagtttttgagacatgccataacttacgcGAGTTGG
CCAAAACTTCGTCTCAGGTGGGAAAAATCCCTTAAATCTCATTTCCACTT
GATTAGTGATTTTAATTTCAtctaaatttgaaattcaattgttgAAGTAT
CCAAATTTGGGTCTctatagaaatttttatcccaatCATAGGAAAAGTTT
CACCAGGGCACTGAGAAAGGGGTATATAATTTTGGATTCAGTCAATGTCT
ATTTTCTTGATTTGAACAGATTCAACGACGTGACATAGAGGATCATAATG
GAAAAGCAAAATCGTCACACGACACTCTTCTCTTCCAAATGGTTAACAAA
ATGAAACACGAAAATATAGAGAGAGATCAAAAGATTCAACAACAAGACCA
AAGAATTGAAGAGTTGGAAAATATCGTCACAAAAAACGAAGAGGAAATCA
AGGAGCTTCAAAACAACTCAATGCAACAAAAAGCTAGCATTACCAAAGAT
CTTCTAGCACTTGCCGATAAAAATCAATCAATTGAAGACtctttaatcaa
aacaaactcaaTGACTTCCAATATTGTAGACTGGGCTAACAAAGGGGGAG
ACGGCTCAGCGGAGAGATCAGTAATTTAAGACTGTATATGGTTTCGTACC
ATCGATTAACTTATATTCTCAAT

Coding sequence (CDS) from alignment at scaffold_60:398312..406184+

>TCONS_00071243 ID=TCONS_00071243|Name=TCONS_00071243|organism=Clytia hemisphaerica|type=CDS|length=2388bp|location=Sequence derived from alignment at scaffold_60:398312..406184+ (Clytia hemisphaerica)
ATGGAAGAACATCTCAGAGTTTGTTTTTACCGTCAAGTAGAATGTGAATA
CTGTAACAAAGAATGCTCTTTCACCCAGTTGAAGGAGCATTACAATAACT
GCGAAGGATATCCGATACCTTGCAACAATTTAGGATGTCCTGATAATATT
CAGAGATCTTTGATGGAAAATCATTTAGAGAATTGTGAGTTCGCGATTGT
TTCTTGTCCCTTTCTTGCATTTGGTTGCACAGAAAAGATTCAACGACGTG
ACATAGAGGATCATAATGGAAAAGCAAAATCGTCACACGACACTCTTCTC
TTCCAAATGGTTAACAAAATGAAACACGAAAATATAGAGAGAGATCAAAA
GATTCAACAACAAGACCAAAGAATTGAAGAGTTGGAAAATATCGTCACAA
AAAACGAAGAGGAAATCAAGGAGCTTCAAAACAACTCAATGCAACAAAAA
GCTAGCATTACCAAAGATCTTCTAGCACTTGCCGATAAAAATCAATCAAT
TGAAGACtctttaatcaaaacaaactcaaTGACTTCCAATATTGTAGACT
GGGCTAACAAAGGGGGAGACGGCTCAGCGGAGAGATCAGTAATTTAAATG
GAAGAACATCTCAGAGTTTGTTTTTACCGTCAAGTAGAATGTGAATACTG
TAACAAAGAATGCTCTTTCACCCAGTTGAAGGAGCATTACAATAACTGCG
AAGGATATCCGATACCTTGCAACAATTTAGGATGTCCTGATAATATTCAG
AGATCTTTGATGGAAAATCATTTAGAGAATTGTGAGTTCGCGATTGTTTC
TTGTCCCTTTCTTGCATTTGGTTGCACAGAAAAGATTCAACGACGTGACA
TAGAGGATCATAATGGAAAAGCAAAATCGTCACACGACACTCTTCTCTTC
CAAATGGTTAACAAAATGAAACACGAAAATATAGAGAGAGATCAAAAGAT
TCAACAACAAGACCAAAGAATTGAAGAGTTGGAAAATATCGTCACAAAAA
ACGAAGAGGAAATCAAGGAGCTTCAAAACAACTCAATGCAACAAAAAGCT
AGCATTACCAAAGATCTTCTAGCACTTGCCGATAAAAATCAATCAATTGA
AGACtctttaatcaaaacaaactcaaTGACTTCCAATATTGTAGACTGGG
CTAACAAAGGGGGAGACGGCTCAGCGGAGAGATCAGTAATTTAAATGGAA
GAACATCTCAGAGTTTGTTTTTACCGTCAAGTAGAATGTGAATACTGTAA
CAAAGAATGCTCTTTCACCCAGTTGAAGGAGCATTACAATAACTGCGAAG
GATATCCGATACCTTGCAACAATTTAGGATGTCCTGATAATATTCAGAGA
TCTTTGATGGAAAATCATTTAGAGAATTGTGAGTTCGCGATTGTTTCTTG
TCCCTTTCTTGCATTTGGTTGCACAGAAAAGATTCAACGACGTGACATAG
AGGATCATAATGGAAAAGCAAAATCGTCACACGACACTCTTCTCTTCCAA
ATGGTTAACAAAATGAAACACGAAAATATAGAGAGAGATCAAAAGATTCA
ACAACAAGACCAAAGAATTGAAGAGTTGGAAAATATCGTCACAAAAAACG
AAGAGGAAATCAAGGAGCTTCAAAACAACTCAATGCAACAAAAAGCTAGC
ATTACCAAAGATCTTCTAGCACTTGCCGATAAAAATCAATCAATTGAAGA
CtctttaatcaaaacaaactcaaTGACTTCCAATATTGTAGACTGGGCTA
ACAAAGGGGGAGACGGCTCAGCGGAGAGATCAGTAATTTAAATGGAAGAA
CATCTCAGAGTTTGTTTTTACCGTCAAGTAGAATGTGAATACTGTAACAA
AGAATGCTCTTTCACCCAGTTGAAGGAGCATTACAATAACTGCGAAGGAT
ATCCGATACCTTGCAACAATTTAGGATGTCCTGATAATATTCAGAGATCT
TTGATGGAAAATCATTTAGAGAATTGTGAGTTCGCGATTGTTTCTTGTCC
CTTTCTTGCATTTGGTTGCACAGAAAAGATTCAACGACGTGACATAGAGG
ATCATAATGGAAAAGCAAAATCGTCACACGACACTCTTCTCTTCCAAATG
GTTAACAAAATGAAACACGAAAATATAGAGAGAGATCAAAAGATTCAACA
ACAAGACCAAAGAATTGAAGAGTTGGAAAATATCGTCACAAAAAACGAAG
AGGAAATCAAGGAGCTTCAAAACAACTCAATGCAACAAAAAGCTAGCATT
ACCAAAGATCTTCTAGCACTTGCCGATAAAAATCAATCAATTGAAGACtc
tttaatcaaaacaaactcaaTGACTTCCAATATTGTAGACTGGGCTAACA
AAGGGGGAGACGGCTCAGCGGAGAGATCAGTAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044283XLOC_044283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071243-exon-scaffold_60-1491911889:398312..398409TCONS_00071243-exon-scaffold_60-1491911889:398312..398409Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1510915933:398312..398409TCONS_00071243-exon-scaffold_60-1510915933:398312..398409Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1575043694:398312..398409TCONS_00071243-exon-scaffold_60-1575043694:398312..398409Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1491911889:398947..399276TCONS_00071243-exon-scaffold_60-1491911889:398947..399276Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1510915933:398947..399276TCONS_00071243-exon-scaffold_60-1510915933:398947..399276Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1575043694:398947..399276TCONS_00071243-exon-scaffold_60-1575043694:398947..399276Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1491911889:400132..400183TCONS_00071243-exon-scaffold_60-1491911889:400132..400183Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1510915933:400132..400183TCONS_00071243-exon-scaffold_60-1510915933:400132..400183Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1575043694:400132..400183TCONS_00071243-exon-scaffold_60-1575043694:400132..400183Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1491911889:403177..403421TCONS_00071243-exon-scaffold_60-1491911889:403177..403421Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1510915933:403177..403421TCONS_00071243-exon-scaffold_60-1510915933:403177..403421Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1575043694:403177..403421TCONS_00071243-exon-scaffold_60-1575043694:403177..403421Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1491911889:404007..404168TCONS_00071243-exon-scaffold_60-1491911889:404007..404168Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1510915933:404007..404168TCONS_00071243-exon-scaffold_60-1510915933:404007..404168Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1575043694:404007..404168TCONS_00071243-exon-scaffold_60-1575043694:404007..404168Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1491911889:404680..404757TCONS_00071243-exon-scaffold_60-1491911889:404680..404757Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1510915933:404680..404757TCONS_00071243-exon-scaffold_60-1510915933:404680..404757Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1575043694:404680..404757TCONS_00071243-exon-scaffold_60-1575043694:404680..404757Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1491911889:404915..404989TCONS_00071243-exon-scaffold_60-1491911889:404915..404989Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1510915933:404915..404989TCONS_00071243-exon-scaffold_60-1510915933:404915..404989Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1575043694:404915..404989TCONS_00071243-exon-scaffold_60-1575043694:404915..404989Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1491911889:405781..406184TCONS_00071243-exon-scaffold_60-1491911889:405781..406184Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1510915933:405781..406184TCONS_00071243-exon-scaffold_60-1510915933:405781..406184Clytia hemisphaericaexon
TCONS_00071243-exon-scaffold_60-1575043694:405781..406184TCONS_00071243-exon-scaffold_60-1575043694:405781..406184Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071243-proteinTCONS_00071243-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:398312..406184 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.700753	0.746344	1.665	2.57504	3.7772	3.10571	9.9221	10.8209	11.5823	9.62198	13.0217	12.423	37.1674	38.0137	9.9923	9.99253	4.74821	7.47545	8.67448	7.1765	6.51811	4.41172	3.60594	4.53872	17.7827	15.3084	6.16322	6.33084	6.91341	9.19067
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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