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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071234 ID=TCONS_00071234|Name=TCONS_00071234|organism=Clytia hemisphaerica|type=transcript|length=2077bp
gtCGAAGTTAAGTCATTGTTGTTTGTACGAAGGTCAACAAGTTACTGCAT
CTTTAAACAACACAGTTTTTGTTGAAGATGCACGGTCCACAGTGGAATGT
ATTTTACGATGTCAAAGGTTGGAGAAAACACCTTTATATACTGAGGAAAA
GAAATGTTATTGTTTTGGAAAGTTTGAAGAACAGAGCTCGAACGAATCAA
AAACCGGGACCATATTCAAGAAGGTTTCCATTGTTGGTGACGAAATGGAA
GATAAGACAGTAAACTATAATCTCATTGGTACATTGGAGATGATTTGTAC
AAGTGATACTGGAAGAATGTGTGAATATCACGGTAGTTTCGTCTTAAATA
TCGGAAGTTTACCGGTAAACCAAAATATCACAATTTGGTCCGTTCCTCAG
CTATCATTCCTTAGCATCATTGTAGGTAACGTTCACACAGTTCAGATCAA
CCACCAGTTTAAAGAGAAGAAGAGCTTCACAACGAGTGAATTAGAATTGA
TTACATTTGATGGAGCAATTCAAGAGTATGACTTTGAAACCAAAACAAGT
AATGTTTTGGGAGATTTCAATGGACAAAGTTTCATTGCGAAGGATATATT
TCAAGCAGACGGACGAAAAATAATCAATGGCGATACCGGTTATGCAACAA
TCACATTACAATTTGTCAAAACATGAAATGAATATTTACCcacatatctt
ttaaataagcatccaaaaatccaaaaactggCTAATTTTCAAAGATCAAC
GGGACCTTGATAGCCAAAGTATATTGCGACTCacaattttctgttttctt
ataAGTGTTCATTTCGTCttaatttataaattttgaagtatttgatttga
ttttaaattgtaTGATGAAGTTTTTCTTAGCTGACAATAGTGTAGACCAC
ATTTTTACACATGAAAAATTAAAGATAAACAAACTGATTCTCATATATTG
ACTTCCAAActgactcgagactcctggttgggaaatgaagccacttattt
ccccttcagaacgcccgcgcgtggtttttacacaaacgctgaattgaaag
taaaatccacTGCTAGCGGTGTGttctgaatgggaaataagtggcttcac
tttttctttcctGGGATAgcttagagattctactctagccatttgggctt
taaactcgatgGTTTCATGGCCACACTTTTTCGGGCAATCATAtctataa
agaaaataaaagcgttttttttttcggtttaANTTTTTCGGGCAAACAAA
TCTATAAAGCAAATAAAAGCGTGTTTTTTCGGTTTAATTACGTCGAATAG
AAAAATTGTTTCAGCATAATAATTTTAAACTGCAATAAATTGTAAATTCT
ACAATAAAATGTAAGATAATGACCATGCTACAGAGaacatttaatttcaa
aatgttttgaaaagtgtTTTCAATCTGTTTCTCATCACTCATGAATAAAA
TATGAAGTTCAGTATAACTATCAAGCAACTTGGAAAAGACAAAAAGGAGA
CTACCAAAGAAAGGCAAAAAAACATAttatagatttataaaataaattag
aaaagAGAAGCCGAGATTCAAATTGATTCATTTTTAAAAGTCCTGTTCGT
TTGCTTATGTTTTTTGATCAAACCCATTTTCAAGAATCgctcattttttt
taatttccatgTTACACCTTCGAACGTGGATATTCCAGCTCCACTTTATC
CAACTACGTTTTTAAAATCGTTTCTCATTTCTCCTTCTCTCAATTGTGCT
AGATCAGCAAAAATTCTCATNcgggtacccctttttttaaataatatgat
tcagaaagttggtatccatatcaaaatgacagcaaaactttcctaatttt
tgcccttcatagctagaaaatacccggggtacatatcagtctaaacaggt
ttcaattggatttgttctagcttttgagtataatgactgtaaatgagtaa
tatAATAAGTTTAAATGACTTTGCAGTTTGttaattttggactttttcga
tattttcaagttttatttttgatcaagcctgaagcaaaaatattttttct
gtgatagcatttggtaatgagtgaatc Run BLAST on NCBI protein sequence of TCONS_00071234-protein >TCONS_00071234-protein ID=TCONS_00071234-protein|Name=TCONS_00071234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
SKLSHCCLYEGQQVTASLNNTVFVEDARSTVECILRCQRLEKTPLYTEEK
KCYCFGKFEEQSSNESKTGTIFKKVSIVGDEMEDKTVNYNLIGTLEMICT
SDTGRMCEYHGSFVLNIGSLPVNQNITIWSVPQLSFLSIIVGNVHTVQIN
HQFKEKKSFTTSELELITFDGAIQEYDFETKTSNVLGDFNGQSFIAKDIF
QADGRKIINGDTGYATITLQFVKT Run BLAST on NCBI transcript from alignment at scaffold_60:308442..311568+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071234 ID=TCONS_00071234|Name=TCONS_00071234|organism=Clytia hemisphaerica|type=transcript|length=3127bp|location=Sequence derived from alignment at scaffold_60:308442..311568+ (Clytia hemisphaerica)
gtCGAAGTTAAGTCATTGTTGTTTGTACGAAGGTCAACAAGTTACTGCAT
CTTTAAACAACACAGTTTTTGTTGAAGATGCACGGTCCACAGTGGAATGT
ATTTTACGATGTCAAAGGTTGGAGAAAACACCTTTATATACTGAGGAAAA
GAAATGTTATTGTTTTGGAAAGTTTGAAGAACAGAGCTCGAACGAATCAA
AAACCGGGACCATATTCAAGAAGGTACATAACTACGTAAATATTTTTCTG
TAATGCGCCGtgtccagcccccccccccccccccgggccgNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATTTCTAAACGATGGCATGTGCTACCAGAA
ttatggctttcaaaatcgtaccctacACCATGTAGcccttttgtttgtaa
caaaagaaaattgaacaaaaagctaaaacaatcaAACATTGCCAGACCGG
GTTTTTTTATAACGACTATGACCTATGTGCGTTTTACCGAACGTTTCCGA
TAAGGAGCCTCTGTGCCATAAATTTCAGCCATATActatttttcaaagta
aaaaccTAATTCTGCCTGActataaagaaaaatgtttagGTATTAACATC
ATCTTGTGTAACAATCTATTATCTATTTCTTGTATTTTAATGTTTAGGTT
TCCATTGTTGGTGACGAAATGGAAGATAAGACAGGTAAAATGAATATCAA
AGATATTATGATGTATCGGTATCTTAGTTGAGTTGTACGGTTTTCTTAGT
CCAAAATATATACCCTAGTGTTGCCATTTTTTATAATATTCCGCCCGAGA
AAATTTTGCTAACTAAGGTCCTATGCCCAATATGTTGATgcattttttgt
cattttgccaaaaaattatGACTACTTTTGaatagcataccgcagtgatt
ctaaaaatagacatcaaaattacattttgtccgagttttaatcccatcat
cctttgcattaattgcttttgcaagtcaattacacttatggacaatacaa
aagtaataacttgcacgcattacgaatcaagatgaaaaggattgtgggat
tgaatttcggtcaaatgttaaaagtaataattatgacgtttgcatagcaG
TGTGCTATTGAGTAATATTTCGTTATTTATATACACTGAAGATATTCTTT
TCCTTTTTAGTAAACTATAATCTCATTGGTACATTGGAGATGATTTGTAC
AAGTGATACTGGAAGAATGTGTGAATATCACGGTAGTTTCGTCTTAAATA
TCGGAAGTTTACCGGTAAACCAAAATATCACAATTTGGTCCGTTCCTCAG
CTATCATTCCTTAGCATCATTGTAGGTAACGTTCACACAGTTCAGATCAA
CCACCAGTTTAAAGAGAAGAAGAGCTTCACAACGAGTGAATTAGAATTGA
TTACATTTGATGGAGCAATTCAAGAGTATGACTTTGAAACCAAAACAAGT
AATGTTTTGGGAGATTTCAATGGACAAAGTTTCATTGCGAAGGATATATT
TCAAGCAGACGGACGAAAAATAATCAATGGCGATACCGGTTATGCAACAA
TCACATTACAATTTGTCAAAACATGAAATGAATATTTACCcacatatctt
ttaaataagcatccaaaaatccaaaaactggCTAATTTTCAAAGATCAAC
GGGACCTTGATAGCCAAAGTATATTGCGACTCacaattttctgttttctt
ataAGTGTTCATTTCGTCttaatttataaattttgaagtatttgatttga
ttttaaattgtaTGATGAAGTTTTTCTTAGCTGACAATAGTGTAGACCAC
ATTTTTACACATGAAAAATTAAAGATAAACAAACTGATTCTCATATATTG
ACTTCCAAActgactcgagactcctggttgggaaatgaagccacttattt
ccccttcagaacgcccgcgcgtggtttttacacaaacgctgaattgaaag
taaaatccacTGCTAGCGGTGTGttctgaatgggaaataagtggcttcac
tttttctttcctGGGATAgcttagagattctactctagccatttgggctt
taaactcgatgGTTTCATGGCCACACTTTTTCGGGCAATCATAtctataa
agaaaataaaagcgttttttttttcggtttaANTTTTTCGGGCAAACAAA
TCTATAAAGCAAATAAAAGCGTGTTTTTTCGGTTTAATTACGTCGAATAG
AAAAATTGTTTCAGCATAATAATTTTAAACTGCAATAAATTGTAAATTCT
ACAATAAAATGTAAGATAATGACCATGCTACAGAGaacatttaatttcaa
aatgttttgaaaagtgtTTTCAATCTGTTTCTCATCACTCATGAATAAAA
TATGAAGTTCAGTATAACTATCAAGCAACTTGGAAAAGACAAAAAGGAGA
CTACCAAAGAAAGGCAAAAAAACATAttatagatttataaaataaattag
aaaagAGAAGCCGAGATTCAAATTGATTCATTTTTAAAAGTCCTGTTCGT
TTGCTTATGTTTTTTGATCAAACCCATTTTCAAGAATCgctcattttttt
taatttccatgTTACACCTTCGAACGTGGATATTCCAGCTCCACTTTATC
CAACTACGTTTTTAAAATCGTTTCTCATTTCTCCTTCTCTCAATTGTGCT
AGATCAGCAAAAATTCTCATNcgggtacccctttttttaaataatatgat
tcagaaagttggtatccatatcaaaatgacagcaaaactttcctaatttt
tgcccttcatagctagaaaatacccggggtacatatcagtctaaacaggt
ttcaattggatttgttctagcttttgagtataatgactgtaaatgagtaa
tatAATAAGTTTAAATGACTTTGCAGTTTGttaattttggactttttcga
tattttcaagttttatttttgatcaagcctgaagcaaaaatattttttct
gtgatagcatttggtaatgagtgaatc Coding sequence (CDS) from alignment at scaffold_60:308442..311568+ >TCONS_00071234 ID=TCONS_00071234|Name=TCONS_00071234|organism=Clytia hemisphaerica|type=CDS|length=2025bp|location=Sequence derived from alignment at scaffold_60:308442..311568+ (Clytia hemisphaerica)
tCGAAGTTAAGTCATTGTTGTTTGTACGAAGGTCAACAAGTTACTGCATC
TTTAAACAACACAGTTTTTGTTGAAGATGCACGGTCCACAGTGGAATGTA
TTTTACGATGTCAAAGGTTGGAGAAAACACCTTTATATACTGAGGAAAAG
AAATGTTATTGTTTTGGAAAGTTTGAAGAACAGAGCTCGAACGAATCAAA
AACCGGGACCATATTCAAGAAGGTTTCCATTGTTGGTGACGAAATGGAAG
ATAAGACAGTAAACTATAATCTCATTGGTACATTGGAGATGATTTGTACA
AGTGATACTGGAAGAATGTGTGAATATCACGGTAGTTTCGTCTTAAATAT
CGGAAGTTTACCGGTAAACCAAAATATCACAATTTGGTCCGTTCCTCAGC
TATCATTCCTTAGCATCATTGTAGGTAACGTTCACACAGTTCAGATCAAC
CACCAGTTTAAAGAGAAGAAGAGCTTCACAACGAGTGAATTAGAATTGAT
TACATTTGATGGAGCAATTCAAGAGTATGACTTTGAAACCAAAACAAGTA
ATGTTTTGGGAGATTTCAATGGACAAAGTTTCATTGCGAAGGATATATTT
CAAGCAGACGGACGAAAAATAATCAATGGCGATACCGGTTATGCAACAAT
CACATTACAATTTGTCAAAACATGAtCGAAGTTAAGTCATTGTTGTTTGT
ACGAAGGTCAACAAGTTACTGCATCTTTAAACAACACAGTTTTTGTTGAA
GATGCACGGTCCACAGTGGAATGTATTTTACGATGTCAAAGGTTGGAGAA
AACACCTTTATATACTGAGGAAAAGAAATGTTATTGTTTTGGAAAGTTTG
AAGAACAGAGCTCGAACGAATCAAAAACCGGGACCATATTCAAGAAGGTT
TCCATTGTTGGTGACGAAATGGAAGATAAGACAGTAAACTATAATCTCAT
TGGTACATTGGAGATGATTTGTACAAGTGATACTGGAAGAATGTGTGAAT
ATCACGGTAGTTTCGTCTTAAATATCGGAAGTTTACCGGTAAACCAAAAT
ATCACAATTTGGTCCGTTCCTCAGCTATCATTCCTTAGCATCATTGTAGG
TAACGTTCACACAGTTCAGATCAACCACCAGTTTAAAGAGAAGAAGAGCT
TCACAACGAGTGAATTAGAATTGATTACATTTGATGGAGCAATTCAAGAG
TATGACTTTGAAACCAAAACAAGTAATGTTTTGGGAGATTTCAATGGACA
AAGTTTCATTGCGAAGGATATATTTCAAGCAGACGGACGAAAAATAATCA
ATGGCGATACCGGTTATGCAACAATCACATTACAATTTGTCAAAACATGA
tCGAAGTTAAGTCATTGTTGTTTGTACGAAGGTCAACAAGTTACTGCATC
TTTAAACAACACAGTTTTTGTTGAAGATGCACGGTCCACAGTGGAATGTA
TTTTACGATGTCAAAGGTTGGAGAAAACACCTTTATATACTGAGGAAAAG
AAATGTTATTGTTTTGGAAAGTTTGAAGAACAGAGCTCGAACGAATCAAA
AACCGGGACCATATTCAAGAAGGTTTCCATTGTTGGTGACGAAATGGAAG
ATAAGACAGTAAACTATAATCTCATTGGTACATTGGAGATGATTTGTACA
AGTGATACTGGAAGAATGTGTGAATATCACGGTAGTTTCGTCTTAAATAT
CGGAAGTTTACCGGTAAACCAAAATATCACAATTTGGTCCGTTCCTCAGC
TATCATTCCTTAGCATCATTGTAGGTAACGTTCACACAGTTCAGATCAAC
CACCAGTTTAAAGAGAAGAAGAGCTTCACAACGAGTGAATTAGAATTGAT
TACATTTGATGGAGCAATTCAAGAGTATGACTTTGAAACCAAAACAAGTA
ATGTTTTGGGAGATTTCAATGGACAAAGTTTCATTGCGAAGGATATATTT
CAAGCAGACGGACGAAAAATAATCAATGGCGATACCGGTTATGCAACAAT
CACATTACAATTTGTCAAAACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071234-exon-scaffold_60-1491911889:308442..308664 | TCONS_00071234-exon-scaffold_60-1491911889:308442..308664 | Clytia hemisphaerica | exon |
| TCONS_00071234-exon-scaffold_60-1510915933:308442..308664 | TCONS_00071234-exon-scaffold_60-1510915933:308442..308664 | Clytia hemisphaerica | exon |
| TCONS_00071234-exon-scaffold_60-1575043694:308442..308664 | TCONS_00071234-exon-scaffold_60-1575043694:308442..308664 | Clytia hemisphaerica | exon |
| TCONS_00071234-exon-scaffold_60-1491911889:309239..309275 | TCONS_00071234-exon-scaffold_60-1491911889:309239..309275 | Clytia hemisphaerica | exon |
| TCONS_00071234-exon-scaffold_60-1510915933:309239..309275 | TCONS_00071234-exon-scaffold_60-1510915933:309239..309275 | Clytia hemisphaerica | exon |
| TCONS_00071234-exon-scaffold_60-1575043694:309239..309275 | TCONS_00071234-exon-scaffold_60-1575043694:309239..309275 | Clytia hemisphaerica | exon |
| TCONS_00071234-exon-scaffold_60-1491911889:309752..311568 | TCONS_00071234-exon-scaffold_60-1491911889:309752..311568 | Clytia hemisphaerica | exon |
| TCONS_00071234-exon-scaffold_60-1510915933:309752..311568 | TCONS_00071234-exon-scaffold_60-1510915933:309752..311568 | Clytia hemisphaerica | exon |
| TCONS_00071234-exon-scaffold_60-1575043694:309752..311568 | TCONS_00071234-exon-scaffold_60-1575043694:309752..311568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:308442..311568 + |
Blast
The following BLAST results are available for this feature:
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