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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071232 ID=TCONS_00071232|Name=TCONS_00071232|organism=Clytia hemisphaerica|type=transcript|length=1686bp
caaaaatttgatattgAATGAGAATACCACCTTTATACGCTTTAAAAGCC
TCCATAAAATCCCAAGAGAAGGAATTTCAAGGAATGTAAACGTACACTAT
TGTGCATTCTCAGACCTCAGTACAGTCACATCTGATGATTACTCAATATC
ATATTAGACTCATTCTTGTCCGTATTTTGATGATATTAAACTTGCAATTC
TTTGCTTTTCATTAGGCTTCTACGTTTACCGTGACTTACCTATGGTCCAA
GGAAAGATGGCTTATTATGGTATCCCAAGAAATCTTAAAGAAGATGGTAT
GATGAATGGTGCTCTTTGCGAAACTGAAACAAATGCTCAATGTGAGCCAT
TGGAGAAAACCTTTTATCTCCAATATCAATGGTTTCCCTTCTACATCGCT
GTCATTGGTTTCCTTTATTATCTCCCTTATGTCTTGTTCCGATACATCAA
CACAGATCTAATCAGTTTGAAAAGTAGCATCAAAGCTGTCGAACCAGACA
TTGATGGAATTGTCAAGAATTACTTCAACTACCAGATCAACCCCCCAATG
CGCATGCGATTGAGATTATTTGCGAACATTTTCTGTAAGATTTGTTATCT
CGTCGTTAACGTGATTGCCTTTGTTGCAACGGACAACCTGTTGAATGGTG
ACTTCCGAAGATACGGTACCGAATGGATTAACTGGAGCAAACAAAGCAAT
AGCAAAGCTTATGATTATACTGCTGGACGCAAACGATTGAGACCTGGAGA
AATCATGCTTCCAACATTCGGTTTCTGTGAAGTTTTGGAACTGAGCAAAG
ATATCAAACACCACTTGTTCAATACACACAAATTCGTTTGCGAAATCTCT
CAGAATGTCTTATACCAATACGTTTTGATTGTCTTGTGGTTTTTATTCAT
CTTCGGTATGATTGTTAGTTGTATTGGATTCATCATGCAAGTGGTCGACC
ATTTAGTCACCATCACATGTTTCTTATCTCAAGGCTCACAGGCTAGACGC
GTCTACCAATCCTTAACCTTACGGGAATGTGAATATCTCGAGTATGTCCG
TAAGAAAAACTTGCCGGTCTACGGTCGGTTGATCCGCAAATTGAAGGAAG
AGAGATTAGATCGTTTCCAGGGCAACAACGGATATGCACCTGAGGATCAA
AAAATGAACCCGTACGGACCAAGTCAAAAACTCTTAAACGATGTTGCACA
ATTGTAAAATACCTACACTTACACACACCAttaccaaaacaaaaacattt
attAAGGGATTTTTTCTATCAAAGCTGCTTCACACAGTAGATATTTGTAT
GTACTTTCATATGGACACCAACCGAACTCTTACGTAATGCTGACGTTATC
TTGTTCGaccatgacgtcataattctaCAACATTACAGAATTGCCGGATT
TTAAAACACTTTTAGTACTGAATTTTATTCATATGTGGTGCTCACCGAAC
ACATTTTAAAGACACTAGTAAGTATTTTCACATCATTTTATGTAAAGATT
TTAGACAACTTTTAGCATTTTATTTCATGACCTCTCAGATATTACGAGCT
CAGATATTACGAGGTCAAcattttttactacttttaatCTCTTTTTTGTA
ACATAGAATTTTAAGAAACCAATCTATCTTGAATTTCCTCGTTTAGTAGA
TTTTTGCTGCCAATAAGCACAGCACGTAAATAGCCA Run BLAST on NCBI transcript from alignment at scaffold_60:295127..296812+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071232 ID=TCONS_00071232|Name=TCONS_00071232|organism=Clytia hemisphaerica|type=transcript|length=1686bp|location=Sequence derived from alignment at scaffold_60:295127..296812+ (Clytia hemisphaerica)
caaaaatttgatattgAATGAGAATACCACCTTTATACGCTTTAAAAGCC
TCCATAAAATCCCAAGAGAAGGAATTTCAAGGAATGTAAACGTACACTAT
TGTGCATTCTCAGACCTCAGTACAGTCACATCTGATGATTACTCAATATC
ATATTAGACTCATTCTTGTCCGTATTTTGATGATATTAAACTTGCAATTC
TTTGCTTTTCATTAGGCTTCTACGTTTACCGTGACTTACCTATGGTCCAA
GGAAAGATGGCTTATTATGGTATCCCAAGAAATCTTAAAGAAGATGGTAT
GATGAATGGTGCTCTTTGCGAAACTGAAACAAATGCTCAATGTGAGCCAT
TGGAGAAAACCTTTTATCTCCAATATCAATGGTTTCCCTTCTACATCGCT
GTCATTGGTTTCCTTTATTATCTCCCTTATGTCTTGTTCCGATACATCAA
CACAGATCTAATCAGTTTGAAAAGTAGCATCAAAGCTGTCGAACCAGACA
TTGATGGAATTGTCAAGAATTACTTCAACTACCAGATCAACCCCCCAATG
CGCATGCGATTGAGATTATTTGCGAACATTTTCTGTAAGATTTGTTATCT
CGTCGTTAACGTGATTGCCTTTGTTGCAACGGACAACCTGTTGAATGGTG
ACTTCCGAAGATACGGTACCGAATGGATTAACTGGAGCAAACAAAGCAAT
AGCAAAGCTTATGATTATACTGCTGGACGCAAACGATTGAGACCTGGAGA
AATCATGCTTCCAACATTCGGTTTCTGTGAAGTTTTGGAACTGAGCAAAG
ATATCAAACACCACTTGTTCAATACACACAAATTCGTTTGCGAAATCTCT
CAGAATGTCTTATACCAATACGTTTTGATTGTCTTGTGGTTTTTATTCAT
CTTCGGTATGATTGTTAGTTGTATTGGATTCATCATGCAAGTGGTCGACC
ATTTAGTCACCATCACATGTTTCTTATCTCAAGGCTCACAGGCTAGACGC
GTCTACCAATCCTTAACCTTACGGGAATGTGAATATCTCGAGTATGTCCG
TAAGAAAAACTTGCCGGTCTACGGTCGGTTGATCCGCAAATTGAAGGAAG
AGAGATTAGATCGTTTCCAGGGCAACAACGGATATGCACCTGAGGATCAA
AAAATGAACCCGTACGGACCAAGTCAAAAACTCTTAAACGATGTTGCACA
ATTGTAAAATACCTACACTTACACACACCAttaccaaaacaaaaacattt
attAAGGGATTTTTTCTATCAAAGCTGCTTCACACAGTAGATATTTGTAT
GTACTTTCATATGGACACCAACCGAACTCTTACGTAATGCTGACGTTATC
TTGTTCGaccatgacgtcataattctaCAACATTACAGAATTGCCGGATT
TTAAAACACTTTTAGTACTGAATTTTATTCATATGTGGTGCTCACCGAAC
ACATTTTAAAGACACTAGTAAGTATTTTCACATCATTTTATGTAAAGATT
TTAGACAACTTTTAGCATTTTATTTCATGACCTCTCAGATATTACGAGCT
CAGATATTACGAGGTCAAcattttttactacttttaatCTCTTTTTTGTA
ACATAGAATTTTAAGAAACCAATCTATCTTGAATTTCCTCGTTTAGTAGA
TTTTTGCTGCCAATAAGCACAGCACGTAAATAGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071232-exon-scaffold_60-1491911889:295127..296812 | TCONS_00071232-exon-scaffold_60-1491911889:295127..296812 | Clytia hemisphaerica | exon |
| TCONS_00071232-exon-scaffold_60-1510915933:295127..296812 | TCONS_00071232-exon-scaffold_60-1510915933:295127..296812 | Clytia hemisphaerica | exon |
| TCONS_00071232-exon-scaffold_60-1575043694:295127..296812 | TCONS_00071232-exon-scaffold_60-1575043694:295127..296812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:295127..296812 + |
Blast
The following BLAST results are available for this feature:
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