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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071229 ID=TCONS_00071229|Name=TCONS_00071229|organism=Clytia hemisphaerica|type=transcript|length=1195bp
CTCTTGCTTAGTTTAGAACTTCTCCTTCTTATGGTCAGACATACAGTCTG
TTCTGTTGTccaaattgttattttttctaaaaataaCTCGCCAACCCGGT
GCACCTCTAAAATCGCGGCAAAAAATTAAAGTGTCCAAAAAACCATTCAG
CAAAGAAGGCAGGTGAGCACATACACAAACAGTGTGTGTAAACGTCGTAA
CACGAAACGCAAAAGGGGGTTGCGTGTGTGAAATAGTAGAAGAGAGACGC
TtctcttcaaaaaaatcaaaaacttggATTTGTCGATATATAACTCTCAG
CAACCACCAAAATGTCGATGATCACTGGAAGTATCAAAGGTCTGCTACAG
ATCAAATTTAAGGCCCGTCATGATTCGCTAACTGATCAATTTAACCGTAT
TTTCATGGTCAAAATGGCAATGGTCTCCAGCATGCTGTTAGGGTTGAATT
GGTTCAAAGATACAATGACATGCGTCATCCCTGGCACTGCTGGTATTGAC
AAAGGATATGTCCATGAAGCTTGCTGGATTCAAGGCTTCTACGTTTACCG
TGACTTACCTATGGTCCAAGGAAAGATGGCTTATTATGGTATCCCAAGAA
ATCTTAAAGAAGATGGTATGATGAATGGTGCTCTTTGCGAAACTGAAACA
AATGCTCAATGTGAGCCATTGGAGAAAACCTTTTATCTCCAATATCAATG
GTTTCCCTTCTACATCGCTGTCATTGGTTTCCTTTATTATCTCCCTTATG
TCTTGTTCCGATACATCAACACAGATCTAATCAGTTTGAAAAGTAGCATC
AAAGCTGTCGAACCAGACATTGATGGAATTGTCAAGAATTACTTCAACTA
CCAGATCAACCCCCCAATGCGCATGCGATTGAGATTATTTGCGAACATTT
TCTGTAAGATTTGTTATCTCGTCGTTAACGTGATTGCCTTTGTTGCAACG
GACAACCTGTTGAATGGTGACTTCCGAAGATACGGTACCGAATGGATTAA
CTGGAGCAAACAAAGCAATAGCAAAGCTTATGATTATACTGCTGGACGCA
AACGATTGAGACCTGGAGAAATCATGCTTCCAACATTCGGTTTCTGTGAA
GTTTTGGAACTGAGCAAAGATATCAAACACCACTTGTTCAATACACACAA
ATTCGTTTGCGAAATCTCTCAGAATGTCTTATACCAATACGTTTT Run BLAST on NCBI transcript from alignment at scaffold_60:287407..294800+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071229 ID=TCONS_00071229|Name=TCONS_00071229|organism=Clytia hemisphaerica|type=transcript|length=7394bp|location=Sequence derived from alignment at scaffold_60:287407..294800+ (Clytia hemisphaerica)
CTCTTGCTTAGTTTAGAACTTCTCCTTCTTATGGTCAGACATACAGTCTG
TTCTGTTGTccaaattgttattttttctaaaagtgagttaatttttgttt
ttgtttacttttcgtctttgttttttgttgttgttgtttctttggctttt
tttgtttccattttcttttgttttgatttgtttcgtTTATTCAGAATTAG
GGTTGTGGtgaaattgatcatttctcgtAAATGATGTAACTGATTTCAGA
ACAATTCATTTCGCAAACAGATGGCATTGTGATTAATGATCTTTTTCACC
TAAACATCAATGGAAATACAATTTCTTTGAATGTCAGCATATTttagaaa
tgtttgtttgtgaaatcactttttcattttacttcaattgaaaatattaa
aataacgagtctgctaaatgacgtgccctacgtgcccacgtgccctcatt
tttttgacgtgccttcgtgccctacgtgccttaCGTGCCTTCGTGNCAAT
GCTCCAAAAAGTACTTGAATATACTTGATTTTCAATGACTAAAATCGCTG
GCCACCCTGTAATacagagtctgctaaatgacatgtcctacgtgcccacg
tgccctcatttttttgacgtgccttcgtgccctacgtgccttacgtgcct
tcgtgccttACGTGCTCAACGTGCCTACGTGCTCGCGTGCCCTCCGAAAT
TTTACGTGCCCGACGTGCTTACGTGCTTGCGTGcccaaagttttgacgtg
ccctcgaattttgacgtgccctcaaattttgacgtgccctcaagttttga
cgtgccctcgaatttcgacgtgccctcaagttttaacgtgccctcaaatt
ttgacgtgccctcaaattttgacgtgccctcgaattttgacgtgccctca
agttttgacgtgccctcgaattttgacgtgccctcgaatttcgacgtgcc
ctcgaattttgactcTCCTATGAATTCTTCTGTGAAGTTAAACTGTTCCT
CGTTTTGCACacaaaaatcgcaaaaagtcGACACAAAAGACAAAagagta
aaaatcaaaaatcaccgtATTTACTTATCATCATATTGAGTACACCACAC
GCTTCACAGCTTTTAATAAGATTGTCCTTGAAGTCCTTGAATATATTCGC
GAAAGCCATCGTTTTCGAATGTCGCTTATTTACACATAAGAATATCGTTG
ATTTAGAGTCTATGTAATGTTCTAGTTGGTGAGTTtgggagttggggagt
tgctagtttcgagttggggagttcgtaaaactttagggcgaccgaaaatt
ttctaatttaaacaaatgtagcccaaaagtacaaatttcaaattagccag
taccaaacatattattgactttaagattatgaaaatggtaaggtgctggc
tagcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtgctggctagcaaagccaaaatactaAGTACTGTTATGTGATTGTCAT
AATGCTGACAACATGacacgttcttgtaaaaatattgacaaaatctttaa
atacaattattgtcaaacaaattccccaaaaaatattgatcatactgcaa
gcgatgcttattgtataaaaggatataagttgacagtcatcttaGCCTCA
AAAAAGTCTTAGATATAGCTTAtatagagctagaaaaataatgacacttt
cttttgtcattttatcattggaattgacactttttaataaaaattttgat
cacattataaaatacaatggttNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtatactcaatgtgatgcaggaaatata
aatggatatgaattgacagtagaaaatagctCTCCGTGCTCTCACctctc
agcgcacgtgtttaaggcaataagcatattacaggtggcatatgtattat
acgtattatgtgtgttatatattactctcattagtcatattacatttact
ttcaaaatcgtacttttgatatatgttattctttttcggtagccggtaat
tttttaactccccaactcgaaactagcaactccctaactcgcgactagaa
tagtttccaaactcgttgatttactattttctttttaaagtctattcacg
ataagtgtgcactcttttttcatttacctataacttttgaaggaattctt
caatctttataaatttggtatcattggaaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ntatctttccaatgataccaaacttataaagattgaagaattccttcaaa
agttataggtaaaagaaaaaagagtgcacacttattgtgaacagacttta
attaAAAGTGCAGACACAGACAATTTGTATAAGAAAATGTGGTGTTTAaa
gaaacttttctttttggtcaGCGGATTTAAGATTTTCAGCGTCACTGACT
TTATGATGTTTTACTTAAAATATTCTCCTTAAAGTGGAGACAACATACac
cattttttaatagaaatttccaaaaaatttggcatcgaattaaaaaagtt
tttatataggaaacaaaaaactatgagactgtctttgtgcaaaatttcaa
gttgtattTCAATGTGATGCTTAAGATTTGAAGGGATTTCTAATGCCATA
CCTCTATTAAAATCTTAAAAAATTCCTTCCTATTTCAGAAAGTTCTTATA
ATTAATACTATATCCcctaacttgaaataaaaagagaGCCAGCTGATAAA
AAGTAAATAGCATGCGTCTcacatattttctcttttttcaaccaatcaga
aaagttctttatttagTTTTGGTTGATTTGCACGTCCAAATtggagggca
cgtcaaaattggagggcacgtcaaaattggagggcacgtcaaaattggag
ggcacgtcaaaatttgagggcacgtcaaaatttgagagcacgtcgaaatt
cgagggcacgtcaaaacttgagggcacgtcaaaatttgagagcacgtcga
aattcgagggcacgtcaaaacttgagggcacgtcaaaattcgagggcacg
tcaaaacttgagggcacgtcaaaacttgagggcacgtcaaaactttgggC
ACGCAAGCACGTAAACACGTAAGCACGTCGGGCACGTAAAATTTCGGAGG
GCACGCGAGCACGTAGGCACGTAAGGCACGCGAGCACGAAGGCACGtaag
gcacgtagggcacgaaggcacgtcaaaaaaatgagggcacgtgggcacgt
agggcacgtcatttagcagactctaaAATAACCATTCTCAAAAATGACCA
ATTAAACAAATAGTATGGTTTACAAACTTTTGAGGTTGGTTGATTTACAA
TTGCTTggtattcgaaaatctaatcgTACCATTCAAGATTATAAGTTATC
TGCACGCCCTTTGTTTGAATTTTGAGGTTACCTTTATTTATGATTATGAA
ACAATCTTTTCTCGATCCTTTTAAAATTCCGTATCATGTCAGAGGTTTCG
ATATTTGGTATCATTCAATCCTTTTAAATCCATTTAAAAGTGGCTTTTCT
ACACGTGTACAAATGAAAAGACTTTTGACGAGTTTTTTTTCTCTGTTGAA
TCTCCTGAGTAATATTTGAATGTAATTACGTTGTTTTAAATCGAGTTTTT
AAATCATGATTTTAatatttctctttctttctttctttctttctttttgt
atctTTAACTTTACTATAAATTCCAAATGAATGggtttaaaagttttttg
ttaTATATTTCTTTAGTTTACGTCTACTTTCAtggtctttttaaagtttt
agcgcgtttcttaatatttttaccAAGTTAGAAATCAAGCTTTAAAATTC
TTCTACCGTTTCTTTTTAACATAATCTTAGAGGGTTTGGGTTTCCAACTC
GTAGTTTAGATGAATAAATGGCATCAGATATtgattagaaaatcaaaaat
actaTAATGCACATATCACATTTAATATTCCATATTCCGTATCTACATTG
AATACCCTGAAATAAATGTgacattttatttcttttttcagataaCTCGC
CAACCCGGTGCACCTCTAAAATCGCGGCAAAAAATTAAAGTGTCCAAAAA
ACCATTCAGCAAAGAAGGCAGGTGAGCACATACACAAACAGTGTGTGTAA
ACGTCGTAACACGAAACGCAAAAGGGGGTTGCGTGTGTGAAATAGTAGAA
GAGAGACGCTtctcttcaaaaaaatcaaaaacttggATTTGTCGATATAT
AACTCTCAGCAACCACCAAAATGTCGATGATCACTGGAAGTATCAAAGGT
CTGCTACAGATCAAATTTAAGGCCCGTCATGATTCGCTAACTGATCAATT
TAACCGTATTTTCATGGTCAAAATGGCAATGGTCTCCAGCATGCTGTTAG
GGTTGAATTGGTTCAAAGATACAATGACATGCGTCATCCCTGGCACTGCT
GGTATTGACAAAGGATATGTCCATGAAGCTTGCTGGATTCAAGGTATATA
TGATTTATTGTTTACACTGTGTTTAGACTTTGGTGCTTTTATCTCTGAAA
TTTACCAGATTTTCAGTAGATGAATGTGTAGCAGTTTTTTGTCTCAATTT
TAAATTCACAAGGAATAAGATTTGAAGGGAAATAGTTTGGTTAGCTAAGC
GGAGATAAGATAAAGAATTGATAGTCATTTGATCatatgtttattttttc
aaataggtGGTTTTAACAGGTTTTAAGCCATTTTTAATGAGGGGTTTAGT
GGCTTTTACATATGTATACATTTGCTTTTTCCCGGACGATTNATTTTTTT
TAATGAGGGGTTTAGTGGCTTTTACATATGTATACATTTGCTTTTTCTCG
GACGATTTTATTTGCTCcgctaaattgtaaaaatgtcGAAAGATAACGGT
AAAACATGTGGTGTAATGTCATAGCAACTTCTTCAAAAACgctctttaaa
aatttaaatttgaaaatgaagatgaaaaatcttGTTAAATAAAACATTTA
TCAATGAAAGAACAATAGCCAGAAAGAATAgcacgaaatttgtaaacact
ATACTGAATTTTCTTACGATTGATTCATTATTTAGAGCAGCCGAAACAGT
TATATCATTCAAAAGTGCGTGTATTGTAAAGCGAAAAAATTTaccttctt
tttataagaaaatttcctgaaaattcAAGTCAGTTTATCGATTCTTTTAA
AAAGATTCACAACTAATAAATCAATATTCTCGAGAGAATTTTCGTCCGAA
AATGAAAAGACTCAGTTAATAGTCAGAATAAAGCTCCATCTAAAACTAAC
AAAGAACTCGGTAGCCAAAAGAATTTTCTTAACTGCTAATGCGGTAGAAA
CTTAAACTCGAAACTTTGGTCTTTTCCTCCTGTTTCTACGTTATCATCAT
TATACTTTCCAAAGTCATTTCCTTTTTTCTACGTCAACTATTTCGTTTAA
TTAAAAGCACATTTTCAAAGTATGCGTTTAAATAGTCACTTCCTCAGCCT
TTTCTTTTAAACCACCACAGTTTGTTATGGTTTCCTCTTTGTAATTTACC
tttaccagaaaaaaaccattacaTTGAGAAATCAAATCTTCATAGATATC
TTTGATTTAtcataaattcaaaaatttgatattgAATGAGAATACCACCT
TTATACGCTTTAAAAGCCTCCATAAAATCCCAAGAGAAGGAATTTCAAGG
AATGTAAACGTACACTATTGTGCATTCTCAGACCTCAGTACAGTCACATC
TGATGATTACTCAATATCATATTAGACTCATTCTTGTCCGTATTTTGATG
ATATTAAACTTGCAATTCTTTGCTTTTCATTAGGCTTCTACGTTTACCGT
GACTTACCTATGGTCCAAGGAAAGATGGCTTATTATGGTATCCCAAGAAA
TCTTAAAGAAGATGGTATGATGAATGGTGCTCTTTGCGAAACTGAAACAA
ATGCTCAATGTGAGCCATTGGAGAAAACCTTTTATCTCCAATATCAATGG
TTTCCCTTCTACATCGCTGTCATTGGTTTCCTTTATTATCTCCCTTATGT
CTTGTTCCGATACATCAACACAGATCTAATCAGTTTGAAAAGTAGCATCA
AAGCTGTCGAACCAGACATTGATGGAATTGTCAAGAATTACTTCAACTAC
CAGATCAACCCCCCAATGCGCATGCGATTGAGATTATTTGCGAACATTTT
CTGTAAGATTTGTTATCTCGTCGTTAACGTGATTGCCTTTGTTGCAACGG
ACAACCTGTTGAATGGTGACTTCCGAAGATACGGTACCGAATGGATTAAC
TGGAGCAAACAAAGCAATAGCAAAGCTTATGATTATACTGCTGGACGCAA
ACGATTGAGACCTGGAGAAATCATGCTTCCAACATTCGGTTTCTGTGAAG
TTTTGGAACTGAGCAAAGATATCAAACACCACTTGTTCAATACACACAAA
TTCGTTTGCGAAATCTCTCAGAATGTCTTATACCAATACGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071229-exon-scaffold_60-1491911889:287407..287488 | TCONS_00071229-exon-scaffold_60-1491911889:287407..287488 | Clytia hemisphaerica | exon |
| TCONS_00071229-exon-scaffold_60-1510915933:287407..287488 | TCONS_00071229-exon-scaffold_60-1510915933:287407..287488 | Clytia hemisphaerica | exon |
| TCONS_00071229-exon-scaffold_60-1575043694:287407..287488 | TCONS_00071229-exon-scaffold_60-1575043694:287407..287488 | Clytia hemisphaerica | exon |
| TCONS_00071229-exon-scaffold_60-1491911889:292348..292799 | TCONS_00071229-exon-scaffold_60-1491911889:292348..292799 | Clytia hemisphaerica | exon |
| TCONS_00071229-exon-scaffold_60-1510915933:292348..292799 | TCONS_00071229-exon-scaffold_60-1510915933:292348..292799 | Clytia hemisphaerica | exon |
| TCONS_00071229-exon-scaffold_60-1575043694:292348..292799 | TCONS_00071229-exon-scaffold_60-1575043694:292348..292799 | Clytia hemisphaerica | exon |
| TCONS_00071229-exon-scaffold_60-1491911889:294140..294800 | TCONS_00071229-exon-scaffold_60-1491911889:294140..294800 | Clytia hemisphaerica | exon |
| TCONS_00071229-exon-scaffold_60-1510915933:294140..294800 | TCONS_00071229-exon-scaffold_60-1510915933:294140..294800 | Clytia hemisphaerica | exon |
| TCONS_00071229-exon-scaffold_60-1575043694:294140..294800 | TCONS_00071229-exon-scaffold_60-1575043694:294140..294800 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:287407..294800 + |
Blast
The following BLAST results are available for this feature:
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