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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071228 ID=TCONS_00071228|Name=TCONS_00071228|organism=Clytia hemisphaerica|type=transcript|length=1153bp
TAGCGCACTAAATTGTCTGGTGTCCGAAAGAGTTGTGAAGataaCTCGCC
AACCCGGTGCACCTCTAAAATCGCGGCAAAAAATTAAAGTGTCCAAAAAA
CCATTCAGCAAAGAAGGCAGGTGAGCACATACACAAACAGTGTGTGTAAA
CGTCGTAACACGAAACGCAAAAGGGGGTTGCGTGTGTGAAATAGTAGAAG
AGAGACGCTtctcttcaaaaaaatcaaaaacttggATTTGTCGATATATA
ACTCTCAGCAACCACCAAAATGTCGATGATCACTGGAAGTATCAAAGGTC
TGCTACAGATCAAATTTAAGGCCCGTCATGATTCGCTAACTGATCAATTT
AACCGTATTTTCATGGTCAAAATGGCAATGGTCTCCAGCATGCTGTTAGG
GTTGAATTGGTTCAAAGATACAATGACATGCGTCATCCCTGGCACTGCTG
GTATTGACAAAGGATATGTCCATGAAGCTTGCTGGATTCAAGGCTTCTAC
GTTTACCGTGACTTACCTATGGTCCAAGGAAAGATGGCTTATTATGGTAT
CCCAAGAAATCTTAAAGAAGATGGTATGATGAATGGTGCTCTTTGCGAAA
CTGAAACAAATGCTCAATGTGAGCCATTGGAGAAAACCTTTTATCTCCAA
TATCAATGGTTTCCCTTCTACATCGCTGTCATTGGTTTCCTTTATTATCT
CCCTTATGTCTTGTTCCGATACATCAACACAGATCTAATCAGTTTGAAAA
GTAGCATCAAAGCTGTCGAACCAGACATTGATGGAATTGTCAAGAATTAC
TTCAACTACCAGATCAACCCCCCAATGCGCATGCGATTGAGATTATTTGC
GAACATTTTCTGTAAGATTTGTTATCTCGTCGTTAACGTGATTGCCTTTG
TTGCAACGGACAACCTGTTGAATGGTGACTTCCGAAGATACGGTACCGAA
TGGATTAACTGGAGCAAACAAAGCAATAGCAAAGCTTATGATTATACTGC
TGGACGCAAACGATTGAGACCTGGAGAAATCATGCTTCCAACATTCGGTT
TCTGTGAAGTTTTGGAACTGAGCAAAGATATCAAACACCACTTGTTCAAT
ACACACAAATTCGTTTGCGAAATCTCTCAGAATGTCTTATACCAATACGT
TTT Run BLAST on NCBI transcript from alignment at scaffold_60:285905..294800+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071228 ID=TCONS_00071228|Name=TCONS_00071228|organism=Clytia hemisphaerica|type=transcript|length=8896bp|location=Sequence derived from alignment at scaffold_60:285905..294800+ (Clytia hemisphaerica)
TAGCGCACTAAATTGTCTGGTGTCCGAAAGAGTTGTGAAGGTAAGGGCTT
TTTTCACTGGCATAAATTCAAATGTGATGAtgtttgtcaatatttttgaa
gccttcgtatatgttctcaactttttgagcctaaaaatgtacttaattca
ccattttgtgagtatttttctttgtgaaatttcctaagaaattcgtagTT
ATATGGAATTGGGTGTTCTAAATTTAGATTCCATAAACTCTAAATattct
taaactttttcttaataATTTGGCTATCAAAGCTTTATGTGCTTATGTAG
TTATTtggttttataaaaaacatgtttatGAATATCTGTCAATTCATTTT
GATGTAAATTCCTGACTGTTTTCTTTCTACCATACGCTGTGGTCAGACTT
TCCAACCTTTTGCTAACCATATAAAGTCGCATTTTATCAGGACGATGTAT
TTATCCAATTTATCAGTTCAAAAAATGATTAGATTAATATAAAAGAAAGA
CCACCACTTTTCTGATACATTCAACCTGCAAATAAACTTAGTCTAGAACA
AGtttgaatttaaagtttttttgctgcCATTCACCACAGACATATGAACA
GTTAGAAAGACTCACAATGACTAACTGTTCATATGTCTATGCATTCATTT
ACATGGAAATCTTGTTTAAAAGTCACTGCTACTCGATCACAGATCACTAA
GAGACAACTCtgagggacaagctggagtttttacaagctcttatttgatt
tggttggtcgttaactagtaataaaacaattttgttactttttctaaaga
acgcgtcatctctatcacttcaaatgaccaattagtgaagtatcttataa
aaactccagctcatcccaactCTGAGGGCTTCAAAAAGCTTTTCTTTGGT
GTATACACGtcattctttattagaaaatttttgaagcctccggatgttct
taactttttgagagtttcaagcctaaaagtgttcacaacatgttcttatt
ttccccattttttatgtatttttgtccattttcctaaaaaattagCTGTT
TTAAGAGTCcgtaaagctttaaaatgttcttaacttgttcttaacatttt
tgccatcgaaggctcatgttcttatatagcttgttcttataaaaaacgta
taatcttataaaaaatctaGACTTTTCGTGCCATCTCACTGCGTCTTAGT
CAGATTTGTATTTGCGATAAAAAAAATCATCGTAGCATGCTTAAAGaagc
atttttcttttaaaataagaTGGCTTTCAGCATTCCTTCTTTTGTGCTTT
TTAATAACAGCCATTATGCGAATGGTTTATGATCGATTATGCGTCGGTTG
GTCATATTCAATAGACTCTATTGTATAACGCAGTCATTACCGGAGTGATT
TTATCGTTTTCATTGATGACACTCTATTGTAAAACTTTACAATTGATtgc
ttttattgttgttttgttctattgacttcattttttttccattaGTTTTA
GACTCTTGCTTAGTTTAGAACTTCTCCTTCTTATGGTCAGACATACAGTC
TGTTCTGTTGTccaaattgttattttttctaaaagtgagttaatttttgt
ttttgtttacttttcgtctttgttttttgttgttgttgtttctttggctt
tttttgtttccattttcttttgttttgatttgtttcgtTTATTCAGAATT
AGGGTTGTGGtgaaattgatcatttctcgtAAATGATGTAACTGATTTCA
GAACAATTCATTTCGCAAACAGATGGCATTGTGATTAATGATCTTTTTCA
CCTAAACATCAATGGAAATACAATTTCTTTGAATGTCAGCATATTttaga
aatgtttgtttgtgaaatcactttttcattttacttcaattgaaaatatt
aaaataacgagtctgctaaatgacgtgccctacgtgcccacgtgccctca
tttttttgacgtgccttcgtgccctacgtgccttaCGTGCCTTCGTGNCA
ATGCTCCAAAAAGTACTTGAATATACTTGATTTTCAATGACTAAAATCGC
TGGCCACCCTGTAATacagagtctgctaaatgacatgtcctacgtgccca
cgtgccctcatttttttgacgtgccttcgtgccctacgtgccttacgtgc
cttcgtgccttACGTGCTCAACGTGCCTACGTGCTCGCGTGCCCTCCGAA
ATTTTACGTGCCCGACGTGCTTACGTGCTTGCGTGcccaaagttttgacg
tgccctcgaattttgacgtgccctcaaattttgacgtgccctcaagtttt
gacgtgccctcgaatttcgacgtgccctcaagttttaacgtgccctcaaa
ttttgacgtgccctcaaattttgacgtgccctcgaattttgacgtgccct
caagttttgacgtgccctcgaattttgacgtgccctcgaatttcgacgtg
ccctcgaattttgactcTCCTATGAATTCTTCTGTGAAGTTAAACTGTTC
CTCGTTTTGCACacaaaaatcgcaaaaagtcGACACAAAAGACAAAagag
taaaaatcaaaaatcaccgtATTTACTTATCATCATATTGAGTACACCAC
ACGCTTCACAGCTTTTAATAAGATTGTCCTTGAAGTCCTTGAATATATTC
GCGAAAGCCATCGTTTTCGAATGTCGCTTATTTACACATAAGAATATCGT
TGATTTAGAGTCTATGTAATGTTCTAGTTGGTGAGTTtgggagttgggga
gttgctagtttcgagttggggagttcgtaaaactttagggcgaccgaaaa
ttttctaatttaaacaaatgtagcccaaaagtacaaatttcaaattagcc
agtaccaaacatattattgactttaagattatgaaaatggtaaggtgctg
gctagcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNtgctggctagcaaagccaaaatactaAGTACTGTTATGTGATTGTC
ATAATGCTGACAACATGacacgttcttgtaaaaatattgacaaaatcttt
aaatacaattattgtcaaacaaattccccaaaaaatattgatcatactgc
aagcgatgcttattgtataaaaggatataagttgacagtcatcttaGCCT
CAAAAAAGTCTTAGATATAGCTTAtatagagctagaaaaataatgacact
ttcttttgtcattttatcattggaattgacactttttaataaaaattttg
atcacattataaaatacaatggttNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtatactcaatgtgatgcaggaaata
taaatggatatgaattgacagtagaaaatagctCTCCGTGCTCTCACctc
tcagcgcacgtgtttaaggcaataagcatattacaggtggcatatgtatt
atacgtattatgtgtgttatatattactctcattagtcatattacattta
ctttcaaaatcgtacttttgatatatgttattctttttcggtagccggta
attttttaactccccaactcgaaactagcaactccctaactcgcgactag
aatagtttccaaactcgttgatttactattttctttttaaagtctattca
cgataagtgtgcactcttttttcatttacctataacttttgaaggaattc
ttcaatctttataaatttggtatcattggaaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNtatctttccaatgataccaaacttataaagattgaagaattccttca
aaagttataggtaaaagaaaaaagagtgcacacttattgtgaacagactt
taattaAAAGTGCAGACACAGACAATTTGTATAAGAAAATGTGGTGTTTA
aagaaacttttctttttggtcaGCGGATTTAAGATTTTCAGCGTCACTGA
CTTTATGATGTTTTACTTAAAATATTCTCCTTAAAGTGGAGACAACATAC
accattttttaatagaaatttccaaaaaatttggcatcgaattaaaaaag
tttttatataggaaacaaaaaactatgagactgtctttgtgcaaaatttc
aagttgtattTCAATGTGATGCTTAAGATTTGAAGGGATTTCTAATGCCA
TACCTCTATTAAAATCTTAAAAAATTCCTTCCTATTTCAGAAAGTTCTTA
TAATTAATACTATATCCcctaacttgaaataaaaagagaGCCAGCTGATA
AAAAGTAAATAGCATGCGTCTcacatattttctcttttttcaaccaatca
gaaaagttctttatttagTTTTGGTTGATTTGCACGTCCAAATtggaggg
cacgtcaaaattggagggcacgtcaaaattggagggcacgtcaaaattgg
agggcacgtcaaaatttgagggcacgtcaaaatttgagagcacgtcgaaa
ttcgagggcacgtcaaaacttgagggcacgtcaaaatttgagagcacgtc
gaaattcgagggcacgtcaaaacttgagggcacgtcaaaattcgagggca
cgtcaaaacttgagggcacgtcaaaacttgagggcacgtcaaaactttgg
gCACGCAAGCACGTAAACACGTAAGCACGTCGGGCACGTAAAATTTCGGA
GGGCACGCGAGCACGTAGGCACGTAAGGCACGCGAGCACGAAGGCACGta
aggcacgtagggcacgaaggcacgtcaaaaaaatgagggcacgtgggcac
gtagggcacgtcatttagcagactctaaAATAACCATTCTCAAAAATGAC
CAATTAAACAAATAGTATGGTTTACAAACTTTTGAGGTTGGTTGATTTAC
AATTGCTTggtattcgaaaatctaatcgTACCATTCAAGATTATAAGTTA
TCTGCACGCCCTTTGTTTGAATTTTGAGGTTACCTTTATTTATGATTATG
AAACAATCTTTTCTCGATCCTTTTAAAATTCCGTATCATGTCAGAGGTTT
CGATATTTGGTATCATTCAATCCTTTTAAATCCATTTAAAAGTGGCTTTT
CTACACGTGTACAAATGAAAAGACTTTTGACGAGTTTTTTTTCTCTGTTG
AATCTCCTGAGTAATATTTGAATGTAATTACGTTGTTTTAAATCGAGTTT
TTAAATCATGATTTTAatatttctctttctttctttctttctttcttttt
gtatctTTAACTTTACTATAAATTCCAAATGAATGggtttaaaagttttt
tgttaTATATTTCTTTAGTTTACGTCTACTTTCAtggtctttttaaagtt
ttagcgcgtttcttaatatttttaccAAGTTAGAAATCAAGCTTTAAAAT
TCTTCTACCGTTTCTTTTTAACATAATCTTAGAGGGTTTGGGTTTCCAAC
TCGTAGTTTAGATGAATAAATGGCATCAGATATtgattagaaaatcaaaa
atactaTAATGCACATATCACATTTAATATTCCATATTCCGTATCTACAT
TGAATACCCTGAAATAAATGTgacattttatttcttttttcagataaCTC
GCCAACCCGGTGCACCTCTAAAATCGCGGCAAAAAATTAAAGTGTCCAAA
AAACCATTCAGCAAAGAAGGCAGGTGAGCACATACACAAACAGTGTGTGT
AAACGTCGTAACACGAAACGCAAAAGGGGGTTGCGTGTGTGAAATAGTAG
AAGAGAGACGCTtctcttcaaaaaaatcaaaaacttggATTTGTCGATAT
ATAACTCTCAGCAACCACCAAAATGTCGATGATCACTGGAAGTATCAAAG
GTCTGCTACAGATCAAATTTAAGGCCCGTCATGATTCGCTAACTGATCAA
TTTAACCGTATTTTCATGGTCAAAATGGCAATGGTCTCCAGCATGCTGTT
AGGGTTGAATTGGTTCAAAGATACAATGACATGCGTCATCCCTGGCACTG
CTGGTATTGACAAAGGATATGTCCATGAAGCTTGCTGGATTCAAGGTATA
TATGATTTATTGTTTACACTGTGTTTAGACTTTGGTGCTTTTATCTCTGA
AATTTACCAGATTTTCAGTAGATGAATGTGTAGCAGTTTTTTGTCTCAAT
TTTAAATTCACAAGGAATAAGATTTGAAGGGAAATAGTTTGGTTAGCTAA
GCGGAGATAAGATAAAGAATTGATAGTCATTTGATCatatgtttattttt
tcaaataggtGGTTTTAACAGGTTTTAAGCCATTTTTAATGAGGGGTTTA
GTGGCTTTTACATATGTATACATTTGCTTTTTCCCGGACGATTNATTTTT
TTTAATGAGGGGTTTAGTGGCTTTTACATATGTATACATTTGCTTTTTCT
CGGACGATTTTATTTGCTCcgctaaattgtaaaaatgtcGAAAGATAACG
GTAAAACATGTGGTGTAATGTCATAGCAACTTCTTCAAAAACgctcttta
aaaatttaaatttgaaaatgaagatgaaaaatcttGTTAAATAAAACATT
TATCAATGAAAGAACAATAGCCAGAAAGAATAgcacgaaatttgtaaaca
ctATACTGAATTTTCTTACGATTGATTCATTATTTAGAGCAGCCGAAACA
GTTATATCATTCAAAAGTGCGTGTATTGTAAAGCGAAAAAATTTaccttc
tttttataagaaaatttcctgaaaattcAAGTCAGTTTATCGATTCTTTT
AAAAAGATTCACAACTAATAAATCAATATTCTCGAGAGAATTTTCGTCCG
AAAATGAAAAGACTCAGTTAATAGTCAGAATAAAGCTCCATCTAAAACTA
ACAAAGAACTCGGTAGCCAAAAGAATTTTCTTAACTGCTAATGCGGTAGA
AACTTAAACTCGAAACTTTGGTCTTTTCCTCCTGTTTCTACGTTATCATC
ATTATACTTTCCAAAGTCATTTCCTTTTTTCTACGTCAACTATTTCGTTT
AATTAAAAGCACATTTTCAAAGTATGCGTTTAAATAGTCACTTCCTCAGC
CTTTTCTTTTAAACCACCACAGTTTGTTATGGTTTCCTCTTTGTAATTTA
CCtttaccagaaaaaaaccattacaTTGAGAAATCAAATCTTCATAGATA
TCTTTGATTTAtcataaattcaaaaatttgatattgAATGAGAATACCAC
CTTTATACGCTTTAAAAGCCTCCATAAAATCCCAAGAGAAGGAATTTCAA
GGAATGTAAACGTACACTATTGTGCATTCTCAGACCTCAGTACAGTCACA
TCTGATGATTACTCAATATCATATTAGACTCATTCTTGTCCGTATTTTGA
TGATATTAAACTTGCAATTCTTTGCTTTTCATTAGGCTTCTACGTTTACC
GTGACTTACCTATGGTCCAAGGAAAGATGGCTTATTATGGTATCCCAAGA
AATCTTAAAGAAGATGGTATGATGAATGGTGCTCTTTGCGAAACTGAAAC
AAATGCTCAATGTGAGCCATTGGAGAAAACCTTTTATCTCCAATATCAAT
GGTTTCCCTTCTACATCGCTGTCATTGGTTTCCTTTATTATCTCCCTTAT
GTCTTGTTCCGATACATCAACACAGATCTAATCAGTTTGAAAAGTAGCAT
CAAAGCTGTCGAACCAGACATTGATGGAATTGTCAAGAATTACTTCAACT
ACCAGATCAACCCCCCAATGCGCATGCGATTGAGATTATTTGCGAACATT
TTCTGTAAGATTTGTTATCTCGTCGTTAACGTGATTGCCTTTGTTGCAAC
GGACAACCTGTTGAATGGTGACTTCCGAAGATACGGTACCGAATGGATTA
ACTGGAGCAAACAAAGCAATAGCAAAGCTTATGATTATACTGCTGGACGC
AAACGATTGAGACCTGGAGAAATCATGCTTCCAACATTCGGTTTCTGTGA
AGTTTTGGAACTGAGCAAAGATATCAAACACCACTTGTTCAATACACACA
AATTCGTTTGCGAAATCTCTCAGAATGTCTTATACCAATACGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071228-exon-scaffold_60-1491911889:285905..285944 | TCONS_00071228-exon-scaffold_60-1491911889:285905..285944 | Clytia hemisphaerica | exon |
| TCONS_00071228-exon-scaffold_60-1510915933:285905..285944 | TCONS_00071228-exon-scaffold_60-1510915933:285905..285944 | Clytia hemisphaerica | exon |
| TCONS_00071228-exon-scaffold_60-1575043694:285905..285944 | TCONS_00071228-exon-scaffold_60-1575043694:285905..285944 | Clytia hemisphaerica | exon |
| TCONS_00071228-exon-scaffold_60-1491911889:292348..292799 | TCONS_00071228-exon-scaffold_60-1491911889:292348..292799 | Clytia hemisphaerica | exon |
| TCONS_00071228-exon-scaffold_60-1510915933:292348..292799 | TCONS_00071228-exon-scaffold_60-1510915933:292348..292799 | Clytia hemisphaerica | exon |
| TCONS_00071228-exon-scaffold_60-1575043694:292348..292799 | TCONS_00071228-exon-scaffold_60-1575043694:292348..292799 | Clytia hemisphaerica | exon |
| TCONS_00071228-exon-scaffold_60-1491911889:294140..294800 | TCONS_00071228-exon-scaffold_60-1491911889:294140..294800 | Clytia hemisphaerica | exon |
| TCONS_00071228-exon-scaffold_60-1510915933:294140..294800 | TCONS_00071228-exon-scaffold_60-1510915933:294140..294800 | Clytia hemisphaerica | exon |
| TCONS_00071228-exon-scaffold_60-1575043694:294140..294800 | TCONS_00071228-exon-scaffold_60-1575043694:294140..294800 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:285905..294800 + |
Blast
The following BLAST results are available for this feature:
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