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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071221 ID=TCONS_00071221|Name=TCONS_00071221|organism=Clytia hemisphaerica|type=transcript|length=1812bp
ACCATATATGACAGAGAAATTATTCTTCACAAAAATTGTTGAgcaatatt
tatattattttaaaagAGGGAAAAGCAATTTAAGTATACGTAAAAAATTG
TGATAATTTTACAATAATGTTTTGTTGATGTTAATAAAATTCCGAATATT
ATATTTAAAGCAATAacaacatttttgtcaagatatgACCAAACCAAGAC
ATTCTCAAGTGTAAGTTCACTCTTTTCTTTATacaagcataacgtttata
agcatacttggGCTCAAGTtcggtaaaaaataagcataatgctaagcata
cctccaagctgaaatgcaaaaaaaatcgtGCTGCTTTTCTAAAGCGCTGT
TTGAGCttccaaaaattttcgcctgctGCACCAAATTACAAGGATAACTT
TCATTCTTTGAGCCAAATCAATGTGCGGACTTAAATattcgaaattttca
tgaaccCAAAGAAAATTAACAAATCAAAGTCTAAGTATATGaataagcat
aaatttaggctaaaaatgagattttgctaagcatattgagcctcgacccg
attttcgcgcatgcttataaaaaaaagtgcattttcaaaattacttttga
aaatcagttCAGTATATCTTCAGgttatttgaagaaaaaaaaacaataga
atttcaactgGACATAAATTATAGCAAGCGGAAGTCAAGTAAACCAAAAA
AGACAACATAACTCATCAAATATGTTTTTACTTGGTTTGGGAGCAGAAAT
ATATATGTGTATGCTGGCATTTGGTTCCATCAAAGAGTTAAGAAATAACT
TTCTTATTTATATTAAAATTCTCGATAGAAAGAATAAGCTTATGTAGCAC
GTACATTGCGTCTTTAGTATCGATTAGATTTCGAATGAGATTGCCAGTGC
TTCCGTGCTTTTTCGTGATTATAAACCTCAAAACAAATTCATTGAAAAGA
CTGTACAAGCAAGCTATTACTAATAAGGAGGCTGCTGGTACCCTGGATAA
CCTTGATATTGATATCGTTGTGTTGGCGGAGGTGCAGTGGACGAAGGATA
TGGCTGCGTTGGAGGTGCTTGTTGCTGTGGGTACGAGGTTGGTGTTGAAT
ACATATTGACGTTCGAATCTGGGTATTGTTGGGGTGGAGTAGGTGCGTAC
GGCATTGAAGAGGCTACCGGAGCTGCAGTGGTGTCCGGTGCTGTGTTCAT
GTTATAAGAGGATTGCTGAGGCGGTTGGTTAGGTGCAGGGTAAGGTGCAC
TTTGCGGTTGTGTCGGTAATGGGTTTGGTTGGCGTTGATTGTACTCCATG
GACGGATAACTTGAAGCTGGAGTAGTCGATGATGTCACTTGTTGCTGGTT
GGAAGGTGGTGCCGGTGAATAGGACTGTGTTGGTTGTTGTTGAGGATTAT
AAGTTGAACTTTGTGTCGGTGCAGGAGCTTGCTGTTGCTGCTGAGGAGCT
GGttgctgctgttgttgttgtatgTTCGTACTGCTTGATACAGGACTATA
TGATTGCTGTCTTGGTGGTTGACTGGCTCCTGTCGgaggaaaaatatatt
taagaATTTATACTTGGTTCACAGTTGATAAGTCacgtgagtgagtgagt
gatgCATAGCGGtaacttagaaaaaaaacttgaatgGAAAGCTTTTGGTT
TGGGGGGACTCGATTTCTACaagaagatattcaaaatcggaccctgacag
tgcattttaccgacCCTTTcttacccttacagtgtagtttgattaCAGGT
CTTATTATGATCAGGTTACCCACAAATAAGCCTGAGACATCGATccaatg
tgcaaaacaaat Run BLAST on NCBI transcript from alignment at scaffold_60:196602..198481+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071221 ID=TCONS_00071221|Name=TCONS_00071221|organism=Clytia hemisphaerica|type=transcript|length=1880bp|location=Sequence derived from alignment at scaffold_60:196602..198481+ (Clytia hemisphaerica)
ACCATATATGACAGAGAAATTATTCTTCACAAAAATTGTTGAgcaatatt
tatattattttaaaagAGGGAAAAGCAATTTAAGTATACGTAAAAAATTG
TGATAATTTTACAATAATGTTTTGTTGATGTTAATAAAATTCCGAATATT
ATATTTAAAGCAATAacaacatttttgtcaagatatgACCAAACCAAGAC
ATTCTCAAGTGTAAGTTCACTCTTTTCTTTATacaagcataacgtttata
agcatacttggGCTCAAGTtcggtaaaaaataagcataatgctaagcata
cctccaagctgaaatgcaaaaaaaatcgtGCTGCTTTTCTAAAGCGCTGT
TTGAGCttccaaaaattttcgcctgctGCACCAAATTACAAGGATAACTT
TCATTCTTTGAGCCAAATCAATGTGCGGACTTAAATattcgaaattttca
tgaaccCAAAGAAAATTAACAAATCAAAGTCTAAGTATATGaataagcat
aaatttaggctaaaaatgagattttgctaagcatattgagcctcgacccg
attttcgcgcatgcttataaaaaaaagtgcattttcaaaattacttttga
aaatcagttCAGTATATCTTCAGgttatttgaagaaaaaaaaacaataga
atttcaactgGACATAAATTATAGCAAGCGGAAGTCAAGTAAACCAAAAA
AGACAACATAACTCATCAAATATGTTTTTACTTGGTTTGGGAGCAGAAAT
ATATATGTGTATGCTGGCATTTGGTTCCATCAAAGAGTTAAGAAATAACT
TTCTTATTTATATTAAAATTCTCGATAGAAAGAATAAGCTTATGTAGCAC
GTACATTGCGTCTTTAGTATCGATTAGATTTCGAATGAGATTGCCAGTGC
TTCCGTGCTTTTTCGTGATTATAAACCTCAAAACAAATTCATTGAAAAGA
CTGTACAAGCAAGCTATTACTAATAAGGAGGCTGCTGGTACCCTGGATAA
CCTTGATATTGATATCGTTGTGTTGGCGGAGGTGCAGTGGACGAAGGATA
TGGCTGCGTTGGAGGTGCTTGTTGCTGTGGGTACGAGGTTGGTGTTGAAT
ACATATTGACGTTCGAATCTGGGTATTGTTGGGGTGGAGTAGGTGCGTAC
GGCATTGAAGAGGCTACCGGAGCTGCAGTGGTGTCCGGTGCTGTGTTCAT
GTTATAAGAGGATTGCTGAGGCGGTTGGTTAGGTGCAGGGTAAGGTGCAC
TTTGCGGTTGTGTCGGTAATGGGTTTGGTTGGCGTTGATTGTACTCCATG
GACGGATAACTTGAAGCTGGAGTAGTCGATGATGTCACTTGTTGCTGGTT
GGAAGGTGGTGCCGGCGAATATGACTGTGTTGGCTGTTGTTGAGGATTAT
AAGTTGAGNTTGCTGGTTGGAAGGTGGTGCCGGTGAATAGGACTGTGTTG
GTTGTTGTTGAGGATTATAAGTTGAACTTTGTGTCGGTGCAGGAGCTTGC
TGTTGCTGCTGAGGAGCTGGttgctgctgttgttgttgtatgTTCGTACT
GCTTGATACAGGACTATATGATTGCTGTCTTGGTGGTTGACTGGCTCCTG
TCGgaggaaaaatatatttaagaATTTATACTTGGTTCACAGTTGATAAG
TCacgtgagtgagtgagtgatgCATAGCGGtaacttagaaaaaaaacttg
aatgGAAAGCTTTTGGTTTGGGGGGACTCGATTTCTACaagaagatattc
aaaatcggaccctgacagtgcattttaccgacCCTTTcttacccttacag
tgtagtttgattaCAGGTCTTATTATGATCAGGTTACCCACAAATAAGCC
TGAGACATCGATccaatgtgcaaaacaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071221-exon-scaffold_60-1491911889:196602..197956 | TCONS_00071221-exon-scaffold_60-1491911889:196602..197956 | Clytia hemisphaerica | exon |
| TCONS_00071221-exon-scaffold_60-1510915933:196602..197956 | TCONS_00071221-exon-scaffold_60-1510915933:196602..197956 | Clytia hemisphaerica | exon |
| TCONS_00071221-exon-scaffold_60-1575043694:196602..197956 | TCONS_00071221-exon-scaffold_60-1575043694:196602..197956 | Clytia hemisphaerica | exon |
| TCONS_00071221-exon-scaffold_60-1491911889:198025..198481 | TCONS_00071221-exon-scaffold_60-1491911889:198025..198481 | Clytia hemisphaerica | exon |
| TCONS_00071221-exon-scaffold_60-1510915933:198025..198481 | TCONS_00071221-exon-scaffold_60-1510915933:198025..198481 | Clytia hemisphaerica | exon |
| TCONS_00071221-exon-scaffold_60-1575043694:198025..198481 | TCONS_00071221-exon-scaffold_60-1575043694:198025..198481 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:196602..198481 + |
Blast
The following BLAST results are available for this feature:
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