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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071220 ID=TCONS_00071220|Name=TCONS_00071220|organism=Clytia hemisphaerica|type=transcript|length=1097bp
GTATAGCAGTGACGAAGATGTTAGTGATCTGGACGACAAATCACTATCTC
ACAGAAAACGAGACACTTCTTCAACCACGAAACCTTCTAACAACAGAAAC
AGCAGCAGCAAAACTATCTCATCATCATCGGCATCGGCGAAAAAGAGAAA
GACCAAGTACAGCAGTGGAAGTGATACTGAAGACTATCGAAAATCACCTG
AAAGGTCGACCAGGAAAACTTCGACCACATCATCATCCACAAAGAAGAAG
AAACGTTACAATACTTCATCCTCTAGTGATCAATCTTCATCCGAATCCGA
CCGCCCGCGCGATCGTAAGAAAGAACGCGCGCGGTCGCCATCACCTCGAA
GGAAATCAACGACATCGAGTTCGTCgacgaagaaaaagaaagagcgAAGA
TATTCGAGTAGTGATGATAGTTATAGTGATTGAGACATCTATGGGACCTC
ATTGATGGATTGAAACAAAAGTCAGCAAGTTTCATTGGTCGAGACTCAAA
GCTTTCATCTAATGCATGGAAGAAGATATTTTACAAAACAAACAacgaaa
tttgattgacattttgAATGATAGAACTTCCAACGGTTTTCGAATCGCCT
CCCGAACGGTGTCAAATCTGTAGTGTGTCTCGTCCGTTAATGGTTAATTC
TCCTCAAtagaagggaaagaaaaaaaacaaaatattctcGAATTCAAAAT
ACACAATTAAAACCGTATTTAAACAAATCAAATCCCCATTCTTCGCAATT
ATCTCTTCTATGTTCGCCTAAGGCGAATTCTATTAACAGATGAGTTATAT
ACTGCATCAATCGATAGACTAGCTGTGGACCTTCGCAATTATCAACTAAC
TATGGTCCTTTGAGTCAATTTTCGGTTTTTGAAATTACACCCTATTTCGA
TTTGTGACTGTCATATTTTTATTGTGTATTATATTTAACATTGGTTATAT
TGGAAGTGATATATTGATAGTGCTTTCTAATTTTCATGCTTCACATGATT
TTTTATATTCGCTTTTTGTCGCttaataaaaattgataaatcgataaatg
aaaaaggaaattaTTTTACTTATTGACGCATTGTATTTTCATGCCCA Run BLAST on NCBI protein sequence of TCONS_00071220-protein >TCONS_00071220-protein ID=TCONS_00071220-protein|Name=TCONS_00071220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
IAVTKMLVIWTTNHYLTENETLLQPRNLLTTETAAAKLSHHHRHRRKRER
PSTAVEVILKTIENHLKGRPGKLRPHHHPQRRRNVTILHPLVINLHPNPT
ARAIVRKNARGRHHLEGNQRHRVRRRRKRKSEDIRVVMIVIVIETSMGPH Run BLAST on NCBI transcript from alignment at scaffold_60:120263..122449+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071220 ID=TCONS_00071220|Name=TCONS_00071220|organism=Clytia hemisphaerica|type=transcript|length=2187bp|location=Sequence derived from alignment at scaffold_60:120263..122449+ (Clytia hemisphaerica)
GTATAGCAGTGACGAAGATGTTAGTGATCTGGACGACAAATCACTATCTC
ACAGAAAACGAGACACTTCTTCAACCACGAAACCTTCTAACAACAGAAAC
AGCAGCAGCAAAACTATCTCATCATCATCGGCATCGGCGAAAAAGAGAAA
GACCAAGTACAGCAGTGGAAGTGATACTGAAGACTATCGAAAAGTAAGTT
CAAGAGCGTTAAAATGCATCCATAATAGCAACATCGTCTAATCTTATaac
atttgcttacacagcattttaaACGATATAAACTCTCCCTTCCGCGCGCC
CGATCACAACTTGTTTTGTCAATTTTGCTTTGTTAGCATAACAGGCGCAC
CTCCTTTCTCCATCATAAAGTAgaattatctggcacccagatggtgaaat
tttcttccgacacgctaaagctctgaagatcgggaaaattttcaacatct
ggaaggtttacattacggaattttgcNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ggaggtctggtaacccagccctcgttttcggggattggcgggtccaaccg
aaatatttataggtttacgcacaagggctgttgaacccgactgagggtgt
ggcacatcaaaggccgactatcattcctctacgatgggaaattggcccgc
tccctttagagctttagcgtgggcggccgccaatccgccatcggaatatc
agataaaaagTAGAATTTCTTTAAGGTGAGGACACACCTATATTATTTGC
GAGATCAAGTTGATTCACCAATTATATTGAGCAGATTGAGCATTTTATCA
ATCTCTTTATTCATTTACTTATTGTATTTTCAGTCACCTGAAAGGTCGAC
CAGGAAAACTTCGACCACATCATCATCCACAAAGAAGAAGAAACGTTACA
ATACTTCATCCTCTAGTGATCAATCTTCATCCGAATCCGACCGCCCGCGC
GATCGTAAGAAAGAACGCGCGCGGTCGCCATCACCTCGAAGGAAATCAAC
GACATCGAGTTCGTCgacgaagaaaaagaaagagcgAAGATATTCGAGTA
GTGATGATAGTTATAGTGATTGAGACATCTATGGGACCTCATTGATGGAT
TGAAACAAAAGTCAGCAAGTTTCATTGGTCGAGACTCAAAGCTTTCATCT
AATGCATGGAAGAAGATATTTTACAAAACAAACAacgaaatttgattgac
attttgAATGATAGAACTTCCAACGGTTTTCGAATCGCCTCCCGAACGGT
GTCAAATCTGTAGTGTGTCTCGTCCGTTAATGGTTAATTCTCCTCAAtag
aagggaaagaaaaaaaacaaaatattctcGAATTCAAAATACACAATTAA
AACCGTATTTAAACAAATCAAATCCCCATTCTTCGCAATTATCTCTTCTA
TGTTCGCCTAAGGCGAATTCTATTAACAGATGAGTTATATACTGCATCAA
TCGATAGACTAGCTGTGGACCTTCGCAATTATCAACTAACTATGGTCCTT
TGAGTCAATTTTCGGTTTTTGAAATTACACCCTATTTCGATTTGTGACTG
TCATATTTTTATTGTGTATTATATTTAACATTGGTTATATTGGAAGTGAT
ATATTGATAGTGCTTTCTAATTTTCATGCTTCACATGATTTTTTATATTC
GCTTTTTGTCGCttaataaaaattgataaatcgataaatgaaaaaggaaa
ttaTTTTACTTATTGACGCATTGTATTTTCATGCCCA Coding sequence (CDS) from alignment at scaffold_60:120263..122449+ >TCONS_00071220 ID=TCONS_00071220|Name=TCONS_00071220|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_60:120263..122449+ (Clytia hemisphaerica)
ATAGCAGTGACGAAGATGTTAGTGATCTGGACGACAAATCACTATCTCAC
AGAAAACGAGACACTTCTTCAACCACGAAACCTTCTAACAACAGAAACAG
CAGCAGCAAAACTATCTCATCATCATCGGCATCGGCGAAAAAGAGAAAGA
CCAAGTACAGCAGTGGAAGTGATACTGAAGACTATCGAAAATCACCTGAA
AGGTCGACCAGGAAAACTTCGACCACATCATCATCCACAAAGAAGAAGAA
ACGTTACAATACTTCATCCTCTAGTGATCAATCTTCATCCGAATCCGACC
GCCCGCGCGATCGTAAGAAAGAACGCGCGCGGTCGCCATCACCTCGAAGG
AAATCAACGACATCGAGTTCGTCgacgaagaaaaagaaagagcgAAGATA
TTCGAGTAGTGATGATAGTTATAGTGATTGAGACATCTATGGGACCTCAT
TGAATAGCAGTGACGAAGATGTTAGTGATCTGGACGACAAATCACTATCT
CACAGAAAACGAGACACTTCTTCAACCACGAAACCTTCTAACAACAGAAA
CAGCAGCAGCAAAACTATCTCATCATCATCGGCATCGGCGAAAAAGAGAA
AGACCAAGTACAGCAGTGGAAGTGATACTGAAGACTATCGAAAATCACCT
GAAAGGTCGACCAGGAAAACTTCGACCACATCATCATCCACAAAGAAGAA
GAAACGTTACAATACTTCATCCTCTAGTGATCAATCTTCATCCGAATCCG
ACCGCCCGCGCGATCGTAAGAAAGAACGCGCGCGGTCGCCATCACCTCGA
AGGAAATCAACGACATCGAGTTCGTCgacgaagaaaaagaaagagcgAAG
ATATTCGAGTAGTGATGATAGTTATAGTGATTGAGACATCTATGGGACCT
CATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071220-exon-scaffold_60-1491911889:120263..120455 | TCONS_00071220-exon-scaffold_60-1491911889:120263..120455 | Clytia hemisphaerica | exon |
| TCONS_00071220-exon-scaffold_60-1510915933:120263..120455 | TCONS_00071220-exon-scaffold_60-1510915933:120263..120455 | Clytia hemisphaerica | exon |
| TCONS_00071220-exon-scaffold_60-1575043694:120263..120455 | TCONS_00071220-exon-scaffold_60-1575043694:120263..120455 | Clytia hemisphaerica | exon |
| TCONS_00071220-exon-scaffold_60-1491911889:121546..122449 | TCONS_00071220-exon-scaffold_60-1491911889:121546..122449 | Clytia hemisphaerica | exon |
| TCONS_00071220-exon-scaffold_60-1510915933:121546..122449 | TCONS_00071220-exon-scaffold_60-1510915933:121546..122449 | Clytia hemisphaerica | exon |
| TCONS_00071220-exon-scaffold_60-1575043694:121546..122449 | TCONS_00071220-exon-scaffold_60-1575043694:121546..122449 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:120263..122449 + |
Blast
The following BLAST results are available for this feature:
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