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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071219 ID=TCONS_00071219|Name=TCONS_00071219|organism=Clytia hemisphaerica|type=transcript|length=1189bp
gttgttttttcattcaaaaacattattaatggcaatgcccaccatcaaac
atgtttcaattttcattaaaattgatttttgaagctNGGGGGTAAAGAAG
ACAGATATTCAATGGTTTTTGACAAAGAAGTGGAAAAAGCCAAAGAAGTG
GAAAAAGTCAAAGATGCCAAAAAGAAGTACGACAAACGTAAAGAAAAACC
CTTATCGTCACGTGGTCACGATAAATCACGAAACAAACGTGAACACTCTG
AAGAGAGTGATTCGGAAAACGACAGAAAACGTGTCAAGAAAACTTTAGCt
gctgaaaaacaaagaaaaaaacgtcGTGGTTCATTATCCAGTCTCGATTC
TCGCTCTCCTTCCCCTTCGCCATCGCCTGATGTCCGACGAAGAAAAGACG
CGACTCCTGTTAATCGCAAGCGTCAAGATGTGTCTGCCGACAAAAGTCgt
cggcaaagtacaaaaagtcGTCGTGATCGAGACTCCTCGGCGGAGGAACT
TCAGAGAGATGCATCATTTGAGAAACGTCGCTCAAAGAATGTATCTCCTG
ATGAAAGACGAAAGGAGAAGAAATTACTGCCTAAGAAGCCGAAAAGAGAT
GACAGATCATCTAGTCCCGAACCTGCTAGACGTGATACGCCGAAAGGTAA
AAGTCGCATCGCTGAGAAAAAGGAGCGTCGGCGATCGTCATCGAGAGAGG
ATAGCAGTCGTAAAAAGGCTCGCGATCGTAAAGAGTCGTCGCTCGATCGT
TCATCACGGAAACAGAAAGGCGATAAACGAAAAGCTGCTCCCGAGAGCGA
CGGCGATTATGATGACTCTTTGatgaagaaattaaagaaaagtaCGATAA
GTGAGAAGAAAAGCACCGATCGAAGGTCGTATTCGAAAAGTCGGTATTCG
CCGGATGACGAGAGACCGAAACCAAAAgctaaaccaaaacaaagattgAG
CGATGAGAAAAAGGACACTAAAAAGGTCGTTAAGAAACGATCGAAATATT
CATCaagtgaaaacgaaagtgattatGATTCTTATGATGAGAAACGGAGC
AAACGAAAACCGGTTTCTTCAACTTCTACTTCTAAAGATACTCGGCGTAA
GAAACGACACGATAGCTCCAGTGATGACGATTTCTCAGAGGATGACAAAA
AGTCTCGTagtaaaacaacaacaacaacgtcGGCGTCTT Run BLAST on NCBI protein sequence of TCONS_00071219-protein >TCONS_00071219-protein ID=TCONS_00071219-protein|Name=TCONS_00071219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MVFDKEVEKAKEVEKVKDAKKKYDKRKEKPLSSRGHDKSRNKREHSEESD
SENDRKRVKKTLAAEKQRKKRRGSLSSLDSRSPSPSPSPDVRRRKDATPV
NRKRQDVSADKSRRQSTKSRRDRDSSAEELQRDASFEKRRSKNVSPDERR
KEKKLLPKKPKRDDRSSSPEPARRDTPKGKSRIAEKKERRRSSSREDSSR
KKARDRKESSLDRSSRKQKGDKRKAAPESDGDYDDSLMKKLKKSTISEKK
STDRRSYSKSRYSPDDERPKPKAKPKQRLSDEKKDTKKVVKKRSKYSSSE
NESDYDSYDEKRSKRKPVSSTSTSKDTRRKKRHDSSSDDDFSEDDKKSRS
KTTTTTSAS Run BLAST on NCBI transcript from alignment at scaffold_60:116110..119937+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071219 ID=TCONS_00071219|Name=TCONS_00071219|organism=Clytia hemisphaerica|type=transcript|length=3828bp|location=Sequence derived from alignment at scaffold_60:116110..119937+ (Clytia hemisphaerica)
gttgttttttcattcaaaaacattattaatggcaatgcccaccatcaaac
atgtttcaattttcattaaaattgatttttgaagctNGGGGGTAAAGAAG
ACAGGTAACATAAACAAGACATTTTCTTTTAATGTCCCCATTCTGTAAGT
TGGCCCTTTAATCTAGATGCAGCAGAAACATTCATGCCAGCTCCACTATC
TTATGAGACAAGAACCTTGTTGTACCTAGTAGCATTGTCGGCTAAATAAT
AACTGTTAAAAAGTTATTGTCCACAAAAAAGCTTTATTCAATAATAGACT
TTTACCATTGCAATATTCAACGCGGTCCAGTGATTTGATTAGTGCTGAGC
TCATCTCCAGCCAGGTTTGAAAGGAAACTGACTTTTAGTTGTGATACTTG
AGACCAACCAATAAGTAAAGAGTAGAGCATGGTAGGCAGATACCACCCTT
GAATGTCGAATCNTGcgcactgatgcaaaatgacaatacctaaaatgtga
cagagcccgattttcgaaaaacatttttttccggctgaaaatgccgggaa
tatgctggaaaaactggttttttgacattttctccaATTTTCATCCTTTT
CATCNGTAAAGAGTAGAGCATGGTAGGCAGATACCACCCTTGAATGTCGA
ATCCCACAGCATTTTGGTCAAATTCTTTTATAACTTTCTTGCCATAGATA
TTCAATGGTTTTTGACAAAGAAGTGGAAAAAGCCAAAGAAGTGGAAAAAG
TCAAAGATGCCAAAAAGAAGTACGACAAACGTAAAGAAAAACCCTTATCG
TCACGTGGTCACGATAAATCACGAAACAAACGTGAACACTCTGAAGAGAG
TGATTCGGAAAACGACAGAAAACGTGTCAAGAAAAGTAAggatttgaatg
ttttgtttaAAGANttcgattttttgagaaaattttttttccggccgaaa
atgccggaaatcgccgtttttgttttctagaaacctttattaagctgtgc
gttTTTTTGATAgtgtattgtttttataaagaaaagcgtttaataacttt
tttacttttttttcataagcctTTTTCCGCAATAGTATTGATAATTTCta
ccaatagatatgctttaattttatatatttttgtattttgaccagttatg
tcttatgtgtttcattgtttcaatgttcattggttAGTTTtggtaaccag
gtaggtccataaaagtatcacttgNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaagctatccaacgagct
atatacgagcttctaattccttctagatcaggagatataagcccttaaag
tttgaactagcgattttttaaaaaaaaattagaaaaaaggaccctggcac
tcaaagggttaagttATACACAGGCAAATGTCTGTTATGTTTTTACTATT
TCCATCAATGATCTTTACCATTGATTTTGTcgtatattttttctttggat
ttgTTTCGCAAGTTTTGGGTTCagttgttaaactttttcttttggaaagg
tgGGTTTTGGCCTTCATCAACAGCTCTGTATTGCTTCCTTCATGTTATGT
TAGATCTACTTACTGACCACCCGTGTCTTAAATACAAACATAATAGACGT
TTTCAAAGAAGTTTTCTGCTATGCACTATTTTATTTTGGTTCATTTCTCA
TCATATTGTAATTCTTTCCTTTCATTAGCTTTAGCtgctgaaaaacaaag
aaaaaaacgtcGTGGTTCATTATCCAGTCTCGATTCTCGCTCTCCTTCCC
CTTCGCCATCGCCTGATGTCCGACGAAGAAAAGACGCGACTCCTGTTAAT
CGCAAGCGTCAAGATGTGTCTGCCGACAAAAGTCgtcggcaaagtacaaa
aagtcGTCGTGATCGAGACTCCTCGGCGGAGGAACTTCAGAGAGATGCAT
CATTTGAGAAACGTCGCTCAAAGAATGTATCTCCTGATGAAAGACGAAAG
GAGAAGAAATTACTGCCTAAGAAGCCGAAAAGAGATGACAGATCATCTAG
TCCCGAACCTGCTAGACGTGATACGCCGAAAGGTAAAAGTCGCATCGCTG
AGAAAAAGGAGCGTCGGCGATCGTCATCGAGAGAGGATAGCAGTCGTAAA
AAGGCTCGCGATCGTAAAGAGTCGTCGCTCGATCGTTCATCACGGAAACA
GAAAGGCGATAAACGAATAGCTGCTCCCGAGAGCGACGACGATTACGATG
ATNGAAAGGCGATAAACGAAAAGCTGCTCCCGAGAGCGACGGCGATTATG
ATGACTCTTTGatgaagaaattaaagaaaagtaCGATAAGTGAGAAGAAA
AGCACCGATCGAAGGTCGTATTCGAAAAGTCGGTATTCGCCGGATGACGA
GAGACCGAAACCAAAAgctaaaccaaaacaaagattgAGCGATGAGAAAA
AGGACACTAAAAAGGTCGTTAAGAAACGATCGAAATATTCATCaagtgaa
aacgaaagtgattatGATTCTTATGATGAGAAACGGAGCAAACGAAAACC
GGTTTCTTCAACTTCTACTTCTAAAGATACTCGGCGTAAGAAACGACACG
ATAGCTCCAGTGATGACGATTTCTCAGAGGATGACAAAAAGTCTCGTagt
aaaacaacaacaacaacgtcGGCGTCTT Coding sequence (CDS) from alignment at scaffold_60:116110..119937+ >TCONS_00071219 ID=TCONS_00071219|Name=TCONS_00071219|organism=Clytia hemisphaerica|type=CDS|length=3231bp|location=Sequence derived from alignment at scaffold_60:116110..119937+ (Clytia hemisphaerica)
ATGGTTTTTGACAAAGAAGTGGAAAAAGCCAAAGAAGTGGAAAAAGTCAA
AGATGCCAAAAAGAAGTACGACAAACGTAAAGAAAAACCCTTATCGTCAC
GTGGTCACGATAAATCACGAAACAAACGTGAACACTCTGAAGAGAGTGAT
TCGGAAAACGACAGAAAACGTGTCAAGAAAACTTTAGCtgctgaaaaaca
aagaaaaaaacgtcGTGGTTCATTATCCAGTCTCGATTCTCGCTCTCCTT
CCCCTTCGCCATCGCCTGATGTCCGACGAAGAAAAGACGCGACTCCTGTT
AATCGCAAGCGTCAAGATGTGTCTGCCGACAAAAGTCgtcggcaaagtac
aaaaagtcGTCGTGATCGAGACTCCTCGGCGGAGGAACTTCAGAGAGATG
CATCATTTGAGAAACGTCGCTCAAAGAATGTATCTCCTGATGAAAGACGA
AAGGAGAAGAAATTACTGCCTAAGAAGCCGAAAAGAGATGACAGATCATC
TAGTCCCGAACCTGCTAGACGTGATACGCCGAAAGGTAAAAGTCGCATCG
CTGAGAAAAAGGAGCGTCGGCGATCGTCATCGAGAGAGGATAGCAGTCGT
AAAAAGGCTCGCGATCGTAAAGAGTCGTCGCTCGATCGTTCATCACGGAA
ACAGAAAGGCGATAAACGAAAAGCTGCTCCCGAGAGCGACGGCGATTATG
ATGACTCTTTGatgaagaaattaaagaaaagtaCGATAAGTGAGAAGAAA
AGCACCGATCGAAGGTCGTATTCGAAAAGTCGGTATTCGCCGGATGACGA
GAGACCGAAACCAAAAgctaaaccaaaacaaagattgAGCGATGAGAAAA
AGGACACTAAAAAGGTCGTTAAGAAACGATCGAAATATTCATCaagtgaa
aacgaaagtgattatGATTCTTATGATGAGAAACGGAGCAAACGAAAACC
GGTTTCTTCAACTTCTACTTCTAAAGATACTCGGCGTAAGAAACGACACG
ATAGCTCCAGTGATGACGATTTCTCAGAGGATGACAAAAAGTCTCGTagt
aaaacaacaacaacaacgtcGGCGTCTATGGTTTTTGACAAAGAAGTGGA
AAAAGCCAAAGAAGTGGAAAAAGTCAAAGATGCCAAAAAGAAGTACGACA
AACGTAAAGAAAAACCCTTATCGTCACGTGGTCACGATAAATCACGAAAC
AAACGTGAACACTCTGAAGAGAGTGATTCGGAAAACGACAGAAAACGTGT
CAAGAAAACTTTAGCtgctgaaaaacaaagaaaaaaacgtcGTGGTTCAT
TATCCAGTCTCGATTCTCGCTCTCCTTCCCCTTCGCCATCGCCTGATGTC
CGACGAAGAAAAGACGCGACTCCTGTTAATCGCAAGCGTCAAGATGTGTC
TGCCGACAAAAGTCgtcggcaaagtacaaaaagtcGTCGTGATCGAGACT
CCTCGGCGGAGGAACTTCAGAGAGATGCATCATTTGAGAAACGTCGCTCA
AAGAATGTATCTCCTGATGAAAGACGAAAGGAGAAGAAATTACTGCCTAA
GAAGCCGAAAAGAGATGACAGATCATCTAGTCCCGAACCTGCTAGACGTG
ATACGCCGAAAGGTAAAAGTCGCATCGCTGAGAAAAAGGAGCGTCGGCGA
TCGTCATCGAGAGAGGATAGCAGTCGTAAAAAGGCTCGCGATCGTAAAGA
GTCGTCGCTCGATCGTTCATCACGGAAACAGAAAGGCGATAAACGAAAAG
CTGCTCCCGAGAGCGACGGCGATTATGATGACTCTTTGatgaagaaatta
aagaaaagtaCGATAAGTGAGAAGAAAAGCACCGATCGAAGGTCGTATTC
GAAAAGTCGGTATTCGCCGGATGACGAGAGACCGAAACCAAAAgctaaac
caaaacaaagattgAGCGATGAGAAAAAGGACACTAAAAAGGTCGTTAAG
AAACGATCGAAATATTCATCaagtgaaaacgaaagtgattatGATTCTTA
TGATGAGAAACGGAGCAAACGAAAACCGGTTTCTTCAACTTCTACTTCTA
AAGATACTCGGCGTAAGAAACGACACGATAGCTCCAGTGATGACGATTTC
TCAGAGGATGACAAAAAGTCTCGTagtaaaacaacaacaacaacgtcGGC
GTCTATGGTTTTTGACAAAGAAGTGGAAAAAGCCAAAGAAGTGGAAAAAG
TCAAAGATGCCAAAAAGAAGTACGACAAACGTAAAGAAAAACCCTTATCG
TCACGTGGTCACGATAAATCACGAAACAAACGTGAACACTCTGAAGAGAG
TGATTCGGAAAACGACAGAAAACGTGTCAAGAAAACTTTAGCtgctgaaa
aacaaagaaaaaaacgtcGTGGTTCATTATCCAGTCTCGATTCTCGCTCT
CCTTCCCCTTCGCCATCGCCTGATGTCCGACGAAGAAAAGACGCGACTCC
TGTTAATCGCAAGCGTCAAGATGTGTCTGCCGACAAAAGTCgtcggcaaa
gtacaaaaagtcGTCGTGATCGAGACTCCTCGGCGGAGGAACTTCAGAGA
GATGCATCATTTGAGAAACGTCGCTCAAAGAATGTATCTCCTGATGAAAG
ACGAAAGGAGAAGAAATTACTGCCTAAGAAGCCGAAAAGAGATGACAGAT
CATCTAGTCCCGAACCTGCTAGACGTGATACGCCGAAAGGTAAAAGTCGC
ATCGCTGAGAAAAAGGAGCGTCGGCGATCGTCATCGAGAGAGGATAGCAG
TCGTAAAAAGGCTCGCGATCGTAAAGAGTCGTCGCTCGATCGTTCATCAC
GGAAACAGAAAGGCGATAAACGAAAAGCTGCTCCCGAGAGCGACGGCGAT
TATGATGACTCTTTGatgaagaaattaaagaaaagtaCGATAAGTGAGAA
GAAAAGCACCGATCGAAGGTCGTATTCGAAAAGTCGGTATTCGCCGGATG
ACGAGAGACCGAAACCAAAAgctaaaccaaaacaaagattgAGCGATGAG
AAAAAGGACACTAAAAAGGTCGTTAAGAAACGATCGAAATATTCATCaag
tgaaaacgaaagtgattatGATTCTTATGATGAGAAACGGAGCAAACGAA
AACCGGTTTCTTCAACTTCTACTTCTAAAGATACTCGGCGTAAGAAACGA
CACGATAGCTCCAGTGATGACGATTTCTCAGAGGATGACAAAAAGTCTCG
TagtaaaacaacaacaacaacgtcGGCGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071219-exon-scaffold_60-1491911889:116110..116213 | TCONS_00071219-exon-scaffold_60-1491911889:116110..116213 | Clytia hemisphaerica | exon |
| TCONS_00071219-exon-scaffold_60-1510915933:116110..116213 | TCONS_00071219-exon-scaffold_60-1510915933:116110..116213 | Clytia hemisphaerica | exon |
| TCONS_00071219-exon-scaffold_60-1575043694:116110..116213 | TCONS_00071219-exon-scaffold_60-1575043694:116110..116213 | Clytia hemisphaerica | exon |
| TCONS_00071219-exon-scaffold_60-1491911889:116807..116994 | TCONS_00071219-exon-scaffold_60-1491911889:116807..116994 | Clytia hemisphaerica | exon |
| TCONS_00071219-exon-scaffold_60-1510915933:116807..116994 | TCONS_00071219-exon-scaffold_60-1510915933:116807..116994 | Clytia hemisphaerica | exon |
| TCONS_00071219-exon-scaffold_60-1575043694:116807..116994 | TCONS_00071219-exon-scaffold_60-1575043694:116807..116994 | Clytia hemisphaerica | exon |
| TCONS_00071219-exon-scaffold_60-1491911889:118988..119464 | TCONS_00071219-exon-scaffold_60-1491911889:118988..119464 | Clytia hemisphaerica | exon |
| TCONS_00071219-exon-scaffold_60-1510915933:118988..119464 | TCONS_00071219-exon-scaffold_60-1510915933:118988..119464 | Clytia hemisphaerica | exon |
| TCONS_00071219-exon-scaffold_60-1575043694:118988..119464 | TCONS_00071219-exon-scaffold_60-1575043694:118988..119464 | Clytia hemisphaerica | exon |
| TCONS_00071219-exon-scaffold_60-1491911889:119518..119937 | TCONS_00071219-exon-scaffold_60-1491911889:119518..119937 | Clytia hemisphaerica | exon |
| TCONS_00071219-exon-scaffold_60-1510915933:119518..119937 | TCONS_00071219-exon-scaffold_60-1510915933:119518..119937 | Clytia hemisphaerica | exon |
| TCONS_00071219-exon-scaffold_60-1575043694:119518..119937 | TCONS_00071219-exon-scaffold_60-1575043694:119518..119937 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:116110..119937 + |
Blast
The following BLAST results are available for this feature:
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