TCONS_00071217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071217
Unique NameTCONS_00071217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071217 ID=TCONS_00071217|Name=TCONS_00071217|organism=Clytia hemisphaerica|type=transcript|length=3605bp
GTTAAGTGCTGGTTCTATCCATCTTAGTTCACTTGTCTGATAAACTTTAA
CTGAACTTGCCACACTAATGTCTGATAGTTAAGTGGTAAAATGAGCATCA
ACATGGTAATTTTAAAGAGCCTGTTATTATAGTCATTCAGTTTTTGGTAC
TGAGGCTTGAAAGTCTCTTACGGTGTTGAAATGTTTCAGTTTTATGTTGT
TTTAAAGAATTGTGAAGCCTTCGTTCTTTTGAGAAAAGGTTCTTagatga
gcttttaaagtcgaCTGTTTTGTCTGAGATAATCTGTAGCTTGTTACATT
CATCTACAGAACTTTCCattgacatttttttgtttatgctTTCTTTTACG
TTCGTTGATTGTCAAGTCATGTTGGCCTGAGAGAAATAGAGTAATTTGCA
TGatatgttttgttgaaagtgacTTGATTGAGGTGCATAGAAACATGTGA
TGTCCAAGGGAAAAGCTTTACTGATTCAATCAATCAACGTTTTTGGCTGA
AATCATAACTAGCTACCTCCTTTTCCTATTGTCTTTCTTAAAGTTGTTTA
CAGTCCGTGCCGGCCCGGAGAAAATCCCGCTTAacggaaattttgacgtc
ataaataaataaatcatagAGAGAGATAGAAAGCGAAACGAGTGAGAGAG
TATAATtcatttcttgatttttattgTATGGAATGACGAAGTTNAAAGCG
AAACGAGTGAGAGAGTATAATTCATTTCTTGATTTGTATTGTATGGAATG
ACGAAgtaaaaaattgatgatgaagttATTTTTATCGCTTCTCTGTtctc
aaaaaaaactttgttaATTGCTTTTGAAGAAGATGAAAGAAAAAGCTAGA
CGCTGTGGTCATTAGCTCGGTGTGAAGGCCCCTTTTTAATGATCATTTGT
AATTATTGTGGCGATTAATGAGTTCCAGTAATAATAATTAGCTTTTGATA
AGAACTGGTGTTGTTCACTTTTCAATGGAGCTCAGTCAAGTGTTTACAAG
TTGTCATTCTTTACGAAAGAAGATTTTTCTACATCTATaactttatttca
ttttacatttttttattcataGAGTCGGTGGTTTATACAGTAACTTTTGG
TTGAAAAACACATTAGAAGAAtagataaaatatattacaaaaattatttt
ggaaaaCTCGAACATTATAAACAGATAAACAGAAACAAATGTATTGCAAA
TTAGACGAGACTGAAATGACACCTAATAATTTCTCCATGAACACCATATT
GACGTCAgagaaacaaaaaatggcagacGAACATCACGAAGAATTAAAAC
TACAACATCTACAAATGGCACAACAACAAGCGGCACAACATCAACCGCTA
ATGAGTTTACAACCACCACAAGGACAAATGGCGCCGCAACacccacaaca
acaacaacctaaATATACAACAGACTGCAATGATAATGAGGAGATTCTCC
AAGCGCCTCCACCACAGAAGAAACTGAAGAATTATGAAGATGAACTACCC
AAGAAAGAAGANCCTCCACCACAAAAGAAACAGAAGAATTATGAAGATGA
ACTACCCAAGAAAGAAGAATTATCTTCTGAAGCTAAACATGTCCATGTTC
ATCTGGAGGACTCAGAGCTGTGGAAGAAATTCAAATCACTGACCAATGAA
ATGATTGTGACTAAAAATGGAAGGCGTATGTTTCCCGTATTGAAATTGAA
CATTAGAGGTCTGGAACCCAATGCTATGTATTCCATCTTATTGGACTTCG
TTGCTGTTGAAGACCACCGCTGGAAATACGTTAACGGTGAATGGGTAGCC
GGTGGAAAACCCGAACCCGCAACCACAAGTTCCGTATATATTCACCCGGA
CTCGCCAAATTTCGGAAATCATTGGATGAAAAATTCAGTCGCGTTTACCA
AAGTTAAACTGACCAATAAAATGAACGGCGAAGGACAGgtTATGTTAAAT
TCTCTACACAAATATCAACCACGAATTCACGTCATCCGAGTCGGTGCACC
CGAAGGTGAACGTACGATATCCACACACACTTTCCCTGAAACGCAATTCA
TCGCAGTCACCGCCTATCAAAACGAAGAAaTTACGCACTTGAAAATTCAA
TACAATCCGTTCGCCAAAGCCTTCCTAGACGCTAAAGAAAGATCTGACCA
AAAAGACATGCTATATGAACGTGATGCTCTCAATCAAATCGCTTCAAACT
ACGGCTATTATCCATCCATGATGTCTCCAGTAACACGTGGTATCGGTTGT
GATAATTTACGGAACCACCGAGCGTCACCTTACCCATCACCATACCAACG
GCCCGATCTTTTGTCCGGTTGTCAGCCGCCATATTATCGTGAATCAAGCC
CACCCTTCATGAGTAATCAATGTATACAAAATAATACGTGGCCATTACAT
CACTTGAACTATAATTCAGCAATGACGTCAGCGCAATTGAAACCTGACGA
CGTCATCAATCAAACGATGTCTGGTACAACGTTTACAGCTTCAACTTTCG
GACAATTCCCAACCACGAAAGCAACTGGTGTCGACCCTAATGCAAACCCT
TGGGCACACTCGCTTGCATATTCAACGAACATATAGAACAAACCTATAGA
AGGAAAGTCATTTATTTAAAAGAGGTTTTTTACGTCTTACCAAAAACGAG
AACGATGCATCTCGTACCGACATGGCTGGAGCATTCGCTTATTTGCCATG
TCTGGCTGATAATCGACGTAAACATTTCAGTCGTCCATGGGGCCTATCTG
ATGTGCCCTTACAAAAGACTGAAGCGAGCTTTGCTCCACCGGTTTACATC
GGTTTGCTACCATTATGGATCCCTTTCTTGGATCCAGACTACCATGACTT
TTAGAAGCGCAATCTATTTTTTATGCACAGTGTGCGCACGCATATATTTT
AATAAAGGAAGAAGAcaaaaaggtttaatatataaatATGATATATAAAA
TAGTACgttatttattgtttttatagtAGAAAAATGCTCTAATTATAATG
AACCATTAGAGATTGGCAAAACAAAAAGTGCGGATCCATATTTTCAAata
caaattattttttcccgcgcttttttgCCCATCTCTTTCTGACATGCGCA
AAGCAAATCAATATATTTGTACAGTTGTTTTTACATGTGTGTAAGTTTGT
TTGTAagatgttatatttttttggatGTACCGCCaccttattattattat
aatattttttgttgtctttaaaaaagccttgtacattttttatttagttt
tttttttttcgtataTATACTATATACAGAGGACTATCGTTTTcatcatt
attttattttcctagCCTTCCTTACACTACCCTCTCCCCTACCCTCGAGG
CTAGTAGAGCCCTCAAttcaaatcaacaatttttcCTCTCGTCCCCCTTT
GCCGAATCATTTCTCCCCCCCccaccgaccccccccccttaccTTAAAAG
ATAATGATGATGACGATAAATTATaattaatattattattatgaGTAGTA
GTTTAACTTGTGAATAATTTGTACAAAAAACAAAGAGAACACTTGGTGtt
gtttatttcaaaataaaatacaaataaacCAAACCGATTTTCTGCTTTCT
TCTTT
Run BLAST on NCBI

protein sequence of TCONS_00071217-protein

>TCONS_00071217-protein ID=TCONS_00071217-protein|Name=TCONS_00071217-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MYCKLDETEMTPNNFSMNTILTSEKQKMADEHHEELKLQHLQMAQQQAAQ
HQPLMSLQPPQGQMAPQHPQQQQPKYTTDCNDNEEILQAPPPQKKLKNYE
DELPKKEXPPPQKKQKNYEDELPKKEELSSEAKHVHVHLEDSELWKKFKS
LTNEMIVTKNGRRMFPVLKLNIRGLEPNAMYSILLDFVAVEDHRWKYVNG
EWVAGGKPEPATTSSVYIHPDSPNFGNHWMKNSVAFTKVKLTNKMNGEGQ
VMLNSLHKYQPRIHVIRVGAPEGERTISTHTFPETQFIAVTAYQNEEITH
LKIQYNPFAKAFLDAKERSDQKDMLYERDALNQIASNYGYYPSMMSPVTR
GIGCDNLRNHRASPYPSPYQRPDLLSGCQPPYYRESSPPFMSNQCIQNNT
WPLHHLNYNSAMTSAQLKPDDVINQTMSGTTFTASTFGQFPTTKATGVDP
NANPWAHSLAYSTNI
Run BLAST on NCBI

transcript from alignment at scaffold_60:70946..79359+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071217 ID=TCONS_00071217|Name=TCONS_00071217|organism=Clytia hemisphaerica|type=transcript|length=8414bp|location=Sequence derived from alignment at scaffold_60:70946..79359+ (Clytia hemisphaerica)
GTTAAGTGCTGGTTCTATCCATCTTAGTTCACTTGTCTGATAAACTTTAA CTGAACTTGCCACACTAATGTCTGATAGTTAAGTGGTAAAATGAGCATCA ACATGGTAATTTTAAAGAGCCTGTTATTATAGTCATTCAGTTTTTGGTAC TGAGGCTTGAAAGTCTCTTACGGTGTTGAAATGTTTCAGTTTTATGTTGT TTTAAAGAATTGTGAAGCCTTCGTTCTTTTGAGAAAAGGTTCTTagatga gcttttaaagtcgaCTGTTTTGTCTGAGATAATCTGTAGCTTGTTACATT CATCTACAGAACTTTCCattgacatttttttgtttatgctTTCTTTTACG TTCGTTGATTGTCAAGTCATGTTGGCCTGAGAGAAATAGAGTAATTTGCA TGatatgttttgttgaaagtgacTTGATTGAGGTGCATAGAAACATGTGA TGTCCAAGGGAAAAGCTTTACTGATTCAATCAATCAACGTTTTTGGCTGA AATCATAACTAGCTACCTCCTTTTCCTATTGTCTTTCTTAAAGTTGTTTA CAGTCCGTGCCGGCCCGGAGAAAATCCCGCTTAacggaaattttgacgtc ataaataaataaatcatagAGAGAGATAGAAAGCGAAACGAGTGAGAGAG TATAATtcatttcttgatttttattgTATGGAATGACGAAGTTNAAAGCG AAACGAGTGAGAGAGTATAATTCATTTCTTGATTTGTATTGTATGGAATG ACGAAgtaaaaaattgatgatgaagttATTTTTATCGCTTCTCTGTtctc aaaaaaaactttgttaATTGCTTTTGAAGAAGATGAAAGAAAAAGCTAGA CGCTGTGGTCATTAGCTCGGTGTGAAGGCCCCTTTTTAATGATCATTTGT AATTATTGTGGCGATTAATGAGTTCCAGTAATAATAATTAGCTTTTGATA AGAACTGGTGTTGTTCACTTTTCAATGGAGCTCAGTCAAGTGTTTACAAG TTGTCATTCTTTACGAAAGAAGATTTTTCTACATCTATaactttatttca ttttacatttttttattcataGAGTCGGTGGTTTATACAGTAACTTTTGG TTGAAAAACACATTAGAAGAAtagataaaatatattacaaaaattatttt ggaaaaCTCGAACATTATAAACAGATAAACAGAAACAAATGTATTGCAAA TTAGACGAGACTGAAATGACACCTAATAATTTCTCCATGAACACCATATT GACGTCAgagaaacaaaaaatggcagacGAACATCACGAAGAATTAAAAC TACAACATCTACAAATGGCACAACAACAAGCGGCACAACATCAACCGCTA ATGAGTTTACAACCACCACAAGGACAAATGGCGCCGCAACacccacaaca acaacaacctaaATATACAACAGACTGCAATGATAATGAGGAGATTCTCC AAGCGCCTCCACCACAGAAGAAACTGAAGAATTATGAAGATGAACTACCC AAGAAAGAAGANCCTCCACCACAAAAGAAACAGAAGAATTATGAAGATGA ACTACCCAAGAAAGAAGAATTATCTTCTGAAGCTAAACATGTCCATGTTC ATCTGGAGGACTCAGAGCTGTGGAAGAAATTCAAATCACTGACCAATGAA ATGATTGTGACTAAAAATGGAAGGTATGAATCAATTACTCATTTTTACGT TTCTTGATAAGCCACCGGGAAACTAGTTTTCGAATCTATGAATCTCCTTG TACTTTGTACGTTTCAGTAATACATATTTCAAACATGCGTTTCAAGGCTt taggaatttcaaaaaaatcagtgTATGTGCAATGGGTTATACCTAAATAC CTCTTAATTTTTACTTAGAAACACTTCGttatcaaaattcaaataacATG TGGTAGCTGTAATCGATGAACTTGGttacgaagaagaaaaaaatcttcaa aatattcTTCCTAGTCCCTTTCCTTTGGTGTCCTATTTCAAGCTTATGTG AAATCTCTTATCTTATCACACGATCAAGCTATCAGTTTTTTAAATCTCAT CATCTTTTTTCACGCTTCTACTCGTCTGACTTAGAATCTTAAAGATTAAG TCTTTTCTCATATGATTTCGAAACATTTTAGGTCTTAGATTTATGCTGTA CGCTCTGCCCCTGTACTACTAGTTTTTTGATTGACAGGTTAGTAAGCGTT AGATTGACGTCAGGCTTAACGAAATCCAAGGTTTCCAAACTTTATTACTA CAACATGCTTGTTAATGAGTAAGGGATTGAATCACCCACGTATTCagatt ttatgttttgaaaCGACTGAGGAATTTTCGGTAGAAGATCTTTTTGAAGG ATTTTTTCGCCGCAGGGTATAAGTTCAATAAAGTACCCAAATTTAATGTA TCATAAGttgggaaaaaatgaaataaaatgaacaaaaaatcaaaaagttc aaTGTTTAATCAATCTAATCCCGTAGAAATGCAAATAAACAAATATGAAT CGAATCTTGCTGTCGGTACTCTTTCATCTTATTACTCTAtcgaaaaaaag ggaaaaggcTTGTAAACGCGCCATATTGAAATTTCTAGTCctctaaaatt ttattaattttttttctcaaaaaaatgtatttgtgTTATTTTTTCAGGCG TATGTTTCCCGTATTGAAATTGAACATTAGAGGTCTGGAACCCAATGCTA TGTATTCCATCTTATTGGACTTCGTTGCTGTTGAAGACCACCGCTGGAAA TACGTTAACGGTGAATGGGTAGCCGGTGGAAAACCCGAACCCGCAACCAC AAGTTCCGTATATATTCACCCGGACTCGCCAAATTTCGGAAATCATTGGA TGAAAAATTCAGTCGCGTTTACCAAAGTTAAACTGACCAATAAAATGAAC GGCGAAGGACAGGTAGATATACTGGCTGTCTTTTCTTGTGAGACTTATTT TGAAATTCGGAAGGATTAGGTAGTTTTTCTTAGAGCTTTTTTGCGATTCG TCGTACAACGGAATAACATTGATGTTATGTGGGTTAAGTTTTTCCTGGTC TCAAGGgagtttgtttgattttttgcgaaaaaattgCCTGCCATCTTTCC TTAAGGCggctttttttaaaagaaaaacaaattacgATCGGTCATCATTC AGTCGGTCTGTtgttagaagaaaaaaatctattttttaggAATGCCTTTA TTCAAtgtaaaaagtgtgaaaatttttcttcCCATTCCTTCTACTTAATA GGTGACCGTTTGCTTtcaataattattaaaaacataaaatagaTCGAATG AAAAAAAGGTCAACGGGcgatttaattacttttttttgactttttgtctt GTNCGAATGAAAAAAAGGTCAACGGGcgatttaattactttttttgactt tttgtcttGTTTTGACAGCGGCAATTCTaatttcttgaaaacttttatCT CAAAGAAacagaaatttaaatttgattgaTTGCATACCAGAAATAGTTTT ATTAAAAGATATTTCTACTCTCAAATTGTTCTATAATAAAAATTCTCCTG AAATTCCGACAGGAAAACACCTTCTAAAGCAACTAATTGGTCACGCTTTC CTTATGTTGTTAGGACCTGGCGAAAATAGAAATGGGAAGGAAGTAAAGTA ACTGAGAAATAGATTCGATCGATACCATTTCCTTCCTGGCGGCTACAAAT TTCATTGCCACGTCACCGTGATTTTAACTTCCTAGTCGCGGCCTTATCTT CTCAATTAGACCAAATTGAATATTTAGACAATTAATTAGACAaatgtttt gtgttttgtttttaggtTATGTTAAATTCTCTACACAAATATCAACCACG AATTCACGTCATCCGAGTCGGTGCACCCGAAGGTGAACGTACGATATCCA CACACACTTTCCCTGAAACGCAATTCATCGCAGTCACCGCCTATCAAAAC GAAGAAGTAAGTTTACGCCCTTCACGCCTCTTTAATGACAGAATAAATCA TTTTCCCATCAAAGTCGGCAGTTTGATAATGCTCtattagaaaaaagccc gccTGTTAACGATACGCCCTCTTCCCGTATCTTTAGTCTATGGTTGCGAT TTTTAACGCCCGCCACCCATCATTGAAAACCACTTAGAGAGGTTTtaaac tttcgttttctaaaaatataatgATGATGAATAGGGTTCAATATAAGCTG CTTATGATGTTTGTAAATAATGATTCGTTTTCGTTATTGATACACACAAA TATGCTATTGTATCTTTATATTATTCAATCGGCTTTGCCAGCGTAGGTCT TTGTAACAGTTGTAACGAAATACCGACACATACAAGTCATCTTGTCAGTA AAATGAAAGCACGAATGTCATTTTTTCCTGATTTAGGAATCAAATCGTTC GGGAATTTCAGCCGTTTCGTGATTTTTATTCATCAATTGAACACGAATAT TATGATATTTCTTTTCGTAAAACTTatttctctttattttttttcgtttt cagaTTACGCACTTGAAAATTCAATACAATCCGTTCGCCAAAGCCTTCCT AGACGCTAAAGAAAGGTAAGAATCAACGATTTAATTCTTCACTCGCATTG CAGGAAATCCTCTCTCTAAATACATTGCGTAAGCTTTATCCAGAGCGCAT CGCGATTGCGCCTTTTTAATGGTCATCGTAATATCAAGGATAGACTTTCG TCTTGCGTTATATGCGATTCATAAGTTATGTTTTtcctgttgtttttttt tgttttttttttacggTGGCCAAAAGCCTGGTCAAGTCATTAACGTTAAA ACATGCGTGTAGAAAAGTAAAGGTATAATGGAGTAGGCCAACAAATACTG TTTTGATAATTAATATGCTTTTATCCCTCGTTAACAACTTCAAAGAGATT CTTAATTGGCTTTACCTTACTTAATGATTTTTATGGTATCANTATCCCTC GTTAACAACTTCAAAGAGATCCTTAATTGGCTTTACCTTacttaatgatt tttatgatatCTAAATgcctcttttttattttattaattctGTAAGCGGT TCTTGATTAATCAAAGAACCTTAATTAAAGTGAGTCTTTTTTTGCGTAAT AAGTTTAACAGACTTTCATGTCACTTTTCATAAAACGTCGGATCGGCAGA ACCATGCAAGCATAAATCTCCCTTCTTTTCTATAGAAGGGTTGTTATTCT GTCTTTTGATGCTTTACGTGGTATCTGATTAGACAAAGAACGCCGATTTG TATTGTTTTCCAATATACAATATTGAcgaaaaaagctttgaaagaaACTA AGGATGACTTTTCTATTGTCTCTTAATTGATAAATCgaagaggaaaaaga aaagacaatGTAACTAGGTCTTTAATGAAAAACATCCAATCTAATTATCC TTTTTTTGAAAGTTATGATGTCATCTGAAGATTTTACCGACAACATGTTT TTCAATTCTCAGTAATTCTTCTGAAATTTTTAAATGCGaagttgactttt tttaaagcaTAGTGGACATTGAGGGGGGAAGCAAATTgttctacttttga aaattgCAATTGAAGATATCAAGGTTCTTCTTTCATTCTTCTTTGAACTT GCCTCTATCGCTTTGATCTTGCCGACCGATCGCTACTTTTCCCCCatctt tctttttgatttccttatTAAAATAAAGATATGTtcatatatattttcat atttgttTAAGACCCTATTTTTCCCTCTCCtttcaagtttcaaaagtttt catcGATACAAGTGCTTTAGTTTCTATTGGTAACTATGTTGGGCTCCTTC AATTCTCTTTCAACTTTGCGAAATTTGTTATGTTCCCAGAAAGTTGTAAC CTGTTGTGAAATTATACGTTAATATAATCCCtttcaatttttgtagattg ttttatttgattatttgcTACCCTTTCATTTGATTAATCTTCGACACTGA TACTCCAGTTTGTCTAGCGGTATTTTGTTCCCCTTataaattttctcttt tcttcgTATTTTTATCCAaggaaaaataatatttgttcGTCCGGAATTTA ATCCGGTCATACTTTAATGACGTCATAGACATACACGACGTCCGCAATGC GGTTCAGATTCAAGGAAAAATTTCCTTTTCGAAAAGTTTTGtatacaaag taaacaaaccgGCATTTTGTGTCCATCTCCTGATACCTTTACTTCTCTTA CAcgtattttgaataaaaatccGGGCGCCTTAGGCCTAGTACTTCAACAA AGCAAATACTTACGCCTCGATTGAATTATGAAATCTTCCCTATCCTAGCT TTCAATGGTACGATTACCTAACGGTTCCAGTTTTTCTTGGCATTAACAAG ACATTTAATGTGGCAAACTTCAACCCTCAGCAATAACTATAATTTGAGTA GAAAACTTATGTTTTTCTTGCGTAAAGATTATTAAAGAAAAGCTAACGAA AACCATAAGATTTTTTCTTATATATACTTGACAGAACGAATNAACTATAA TTTGAGTAGAAAACTTATGTTTTCTTGCGTAAAGATTATTAAAGAAAAGC TAACGAAAACCATAAGATTTTTTCTTATATATACTTGACTGAACGAAatt tatatttgatttttctttgacaGATCTGACCAAAAAGACATGCTATATGA ACGTGATGCTCTCAATCAAATCGCTTCAAACTGTAAGTATCCAGGCTTCT ATAATTCAGTTTGTTTGGAATTCAGTCTAAAAATACTTAGGATTGTCACA CTGGGATTGTCTAAATATTGGCTTTCACCTATAGGCCTCCAACATCCGTT CTTACAGCTCACTTCAAAAGGGATGGATATTTTTGTCATTCCAAGCTATA TATAGACAGATCTATTTAAAGGGTTTCCGGTTGTTGTCATAAGACTTATC TGAACTGAAAATATCAAGTTTGCGGAAAAGATTTCCGACCGTTGGACCAT CGAGTCTAGAAAATCACAattgaaagttattttcatattttcatctTTTC TATTTTAAGACGGCTATTATCCATCCATGATGTCTCCAGTAACACGTGGT ATCGGTTGTGATAATTTACGGAACCACCGAGCGTCACCTTACCCATCACC ATACCAACGGCCCGATCTTTTGTCCGGTTGTCAGCCGCCATATTATCGTG AATCAAGCCCACCCTTCATGAGTAATCAATGTATACAAAATAATACGTGG CCATTACATCACTTGAACTATAATTCAGCAATGACGTCAGCGCAATTGAA ACCTGACGACGTCATCAATCAAACGATGTCTGGTACAACGTTTACAGCTT CAACTTTCGGACAATTCCCAACCACGAAAGCAACTGGTGTCGACCCTAAT GCAAACCCTTGGGCACACTCGCTTGCATATTCAACGAACATATAGAACAA ACCTATAGAAGGAAAGTCATTTATTTAAAAGAGGTTTTTTACGTCTTACC AAAAACGAGAACGATGCATCTCGTACCGACATGGCTGGAGCATTCGCTTA TTTGCCATGTCTGGCTGATAATCGACGTAAACATTTCAGTCGTCCATGGG GCCTATCTGATGTGCCCTTACAAAAGACTGAAGCGAGCTTTGCTCCACCG GTTTACATCGGTTTGCTACCATTATGGATCCCTTTCTTGGATCCAGACTA CCATGACTTTTAGAAGCGCAATCTATTTTTTATGCACAGTGTGCGCACGC ATATATTTTAATAAAGGAAGAAGAcaaaaaggtttaatatataaatATGA TATATAAAATAGTACgttatttattgtttttatagtAGAAAAATGCTCTA ATTATAATGAACCATTAGAGATTGGCAAAACAAAAAGTGCGGATCCATAT TTTCAAatacaaattattttttcccgcgcttttttgCCCATCTCTTTCTG ACATGCGCAAAGCAAATCAATATATTTGTACAGTTGTTTTTACATGTGTG TAAGTTTGTTTGTAagatgttatatttttttggatGTACCGCCaccttat tattattataatattttttgttgtctttaaaaaagccttgtacatttttt atttagttttttttttttcgtataTATACTATATACAGAGGACTATCGTT TTcatcattattttattttcctagCCTTCCTTACACTACCCTCTCCCCTA CCCTCGAGGCTAGTAGAGCCCTCAAttcaaatcaacaatttttcCTCTCG TCCCCCTTTGCCGAATCATTTCTCCCCCCCccaccgacccccccccctta ccTTAAAAGATAATGATGATGACGATAAATTATaattaatattattatta tgaGTAGTAGTTTAACTTGTGAATAATTTGTACAAAAAACAAAGAGAACA CTTGGTGttgtttatttcaaaataaaatacaaataaacCAAACCGATTTT CTGCTTTCTTCTTT

Coding sequence (CDS) from alignment at scaffold_60:70946..79359+

>TCONS_00071217 ID=TCONS_00071217|Name=TCONS_00071217|organism=Clytia hemisphaerica|type=CDS|length=8388bp|location=Sequence derived from alignment at scaffold_60:70946..79359+ (Clytia hemisphaerica)
ATGTATTGCAAATTAGACGAGACTGAAATGACACCTAATAATTTCTCCAT
GAACACCATATTGACGTCAgagaaacaaaaaatggcagacGAACATCACG
AAGAATTAAAACTACAACATCTACAAATGGCACAACAACAAGCGGCACAA
CATCAACCGCTAATGAGTTTACAACCACCACAAGGACAAATGGCGCCGCA
ACacccacaacaacaacaacctaaATATACAACAGACTGCAATGATAATG
AGGAGATTCTCCAAGCGCCTCCACCACAGAAGAAACTGAAGAATTATGAA
GATGAACTACCCAAGAAAGAAGANCCTCCACCACAAAAGAAACAGAAGAA
TTATGAAGATGAACTACCCAAGAAAGAAGAATTATCTTCTGAAGCTAAAC
ATGTCCATGTTCATCTGGAGGACTCAGAGCTGTGGAAGAAATTCAAATCA
CTGACCAATGAAATGATTGTGACTAAAAATGGAAGGCGTATGTTTCCCGT
ATTGAAATTGAACATTAGAGGTCTGGAACCCAATGCTATGTATTCCATCT
TATTGGACTTCGTTGCTGTTGAAGACCACCGCTGGAAATACGTTAACGGT
GAATGGGTAGCCGGTGGAAAACCCGAACCCGCAACCACAAGTTCCGTATA
TATTCACCCGGACTCGCCAAATTTCGGAAATCATTGGATGAAAAATTCAG
TCGCGTTTACCAAAGTTAAACTGACCAATAAAATGAACGGCGAAGGACAG
gtTATGTTAAATTCTCTACACAAATATCAACCACGAATTCACGTCATCCG
AGTCGGTGCACCCGAAGGTGAACGTACGATATCCACACACACTTTCCCTG
AAACGCAATTCATCGCAGTCACCGCCTATCAAAACGAAGAAaTTACGCAC
TTGAAAATTCAATACAATCCGTTCGCCAAAGCCTTCCTAGACGCTAAAGA
AAGATCTGACCAAAAAGACATGCTATATGAACGTGATGCTCTCAATCAAA
TCGCTTCAAACTACGGCTATTATCCATCCATGATGTCTCCAGTAACACGT
GGTATCGGTTGTGATAATTTACGGAACCACCGAGCGTCACCTTACCCATC
ACCATACCAACGGCCCGATCTTTTGTCCGGTTGTCAGCCGCCATATTATC
GTGAATCAAGCCCACCCTTCATGAGTAATCAATGTATACAAAATAATACG
TGGCCATTACATCACTTGAACTATAATTCAGCAATGACGTCAGCGCAATT
GAAACCTGACGACGTCATCAATCAAACGATGTCTGGTACAACGTTTACAG
CTTCAACTTTCGGACAATTCCCAACCACGAAAGCAACTGGTGTCGACCCT
AATGCAAACCCTTGGGCACACTCGCTTGCATATTCAACGAACATATAGAT
GTATTGCAAATTAGACGAGACTGAAATGACACCTAATAATTTCTCCATGA
ACACCATATTGACGTCAgagaaacaaaaaatggcagacGAACATCACGAA
GAATTAAAACTACAACATCTACAAATGGCACAACAACAAGCGGCACAACA
TCAACCGCTAATGAGTTTACAACCACCACAAGGACAAATGGCGCCGCAAC
acccacaacaacaacaacctaaATATACAACAGACTGCAATGATAATGAG
GAGATTCTCCAAGCGCCTCCACCACAGAAGAAACTGAAGAATTATGAAGA
TGAACTACCCAAGAAAGAAGANCCTCCACCACAAAAGAAACAGAAGAATT
ATGAAGATGAACTACCCAAGAAAGAAGAATTATCTTCTGAAGCTAAACAT
GTCCATGTTCATCTGGAGGACTCAGAGCTGTGGAAGAAATTCAAATCACT
GACCAATGAAATGATTGTGACTAAAAATGGAAGGCGTATGTTTCCCGTAT
TGAAATTGAACATTAGAGGTCTGGAACCCAATGCTATGTATTCCATCTTA
TTGGACTTCGTTGCTGTTGAAGACCACCGCTGGAAATACGTTAACGGTGA
ATGGGTAGCCGGTGGAAAACCCGAACCCGCAACCACAAGTTCCGTATATA
TTCACCCGGACTCGCCAAATTTCGGAAATCATTGGATGAAAAATTCAGTC
GCGTTTACCAAAGTTAAACTGACCAATAAAATGAACGGCGAAGGACAGgt
TATGTTAAATTCTCTACACAAATATCAACCACGAATTCACGTCATCCGAG
TCGGTGCACCCGAAGGTGAACGTACGATATCCACACACACTTTCCCTGAA
ACGCAATTCATCGCAGTCACCGCCTATCAAAACGAAGAAaTTACGCACTT
GAAAATTCAATACAATCCGTTCGCCAAAGCCTTCCTAGACGCTAAAGAAA
GATCTGACCAAAAAGACATGCTATATGAACGTGATGCTCTCAATCAAATC
GCTTCAAACTACGGCTATTATCCATCCATGATGTCTCCAGTAACACGTGG
TATCGGTTGTGATAATTTACGGAACCACCGAGCGTCACCTTACCCATCAC
CATACCAACGGCCCGATCTTTTGTCCGGTTGTCAGCCGCCATATTATCGT
GAATCAAGCCCACCCTTCATGAGTAATCAATGTATACAAAATAATACGTG
GCCATTACATCACTTGAACTATAATTCAGCAATGACGTCAGCGCAATTGA
AACCTGACGACGTCATCAATCAAACGATGTCTGGTACAACGTTTACAGCT
TCAACTTTCGGACAATTCCCAACCACGAAAGCAACTGGTGTCGACCCTAA
TGCAAACCCTTGGGCACACTCGCTTGCATATTCAACGAACATATAGATGT
ATTGCAAATTAGACGAGACTGAAATGACACCTAATAATTTCTCCATGAAC
ACCATATTGACGTCAgagaaacaaaaaatggcagacGAACATCACGAAGA
ATTAAAACTACAACATCTACAAATGGCACAACAACAAGCGGCACAACATC
AACCGCTAATGAGTTTACAACCACCACAAGGACAAATGGCGCCGCAACac
ccacaacaacaacaacctaaATATACAACAGACTGCAATGATAATGAGGA
GATTCTCCAAGCGCCTCCACCACAGAAGAAACTGAAGAATTATGAAGATG
AACTACCCAAGAAAGAAGANCCTCCACCACAAAAGAAACAGAAGAATTAT
GAAGATGAACTACCCAAGAAAGAAGAATTATCTTCTGAAGCTAAACATGT
CCATGTTCATCTGGAGGACTCAGAGCTGTGGAAGAAATTCAAATCACTGA
CCAATGAAATGATTGTGACTAAAAATGGAAGGCGTATGTTTCCCGTATTG
AAATTGAACATTAGAGGTCTGGAACCCAATGCTATGTATTCCATCTTATT
GGACTTCGTTGCTGTTGAAGACCACCGCTGGAAATACGTTAACGGTGAAT
GGGTAGCCGGTGGAAAACCCGAACCCGCAACCACAAGTTCCGTATATATT
CACCCGGACTCGCCAAATTTCGGAAATCATTGGATGAAAAATTCAGTCGC
GTTTACCAAAGTTAAACTGACCAATAAAATGAACGGCGAAGGACAGgtTA
TGTTAAATTCTCTACACAAATATCAACCACGAATTCACGTCATCCGAGTC
GGTGCACCCGAAGGTGAACGTACGATATCCACACACACTTTCCCTGAAAC
GCAATTCATCGCAGTCACCGCCTATCAAAACGAAGAAaTTACGCACTTGA
AAATTCAATACAATCCGTTCGCCAAAGCCTTCCTAGACGCTAAAGAAAGA
TCTGACCAAAAAGACATGCTATATGAACGTGATGCTCTCAATCAAATCGC
TTCAAACTACGGCTATTATCCATCCATGATGTCTCCAGTAACACGTGGTA
TCGGTTGTGATAATTTACGGAACCACCGAGCGTCACCTTACCCATCACCA
TACCAACGGCCCGATCTTTTGTCCGGTTGTCAGCCGCCATATTATCGTGA
ATCAAGCCCACCCTTCATGAGTAATCAATGTATACAAAATAATACGTGGC
CATTACATCACTTGAACTATAATTCAGCAATGACGTCAGCGCAATTGAAA
CCTGACGACGTCATCAATCAAACGATGTCTGGTACAACGTTTACAGCTTC
AACTTTCGGACAATTCCCAACCACGAAAGCAACTGGTGTCGACCCTAATG
CAAACCCTTGGGCACACTCGCTTGCATATTCAACGAACATATAGATGTAT
TGCAAATTAGACGAGACTGAAATGACACCTAATAATTTCTCCATGAACAC
CATATTGACGTCAgagaaacaaaaaatggcagacGAACATCACGAAGAAT
TAAAACTACAACATCTACAAATGGCACAACAACAAGCGGCACAACATCAA
CCGCTAATGAGTTTACAACCACCACAAGGACAAATGGCGCCGCAACaccc
acaacaacaacaacctaaATATACAACAGACTGCAATGATAATGAGGAGA
TTCTCCAAGCGCCTCCACCACAGAAGAAACTGAAGAATTATGAAGATGAA
CTACCCAAGAAAGAAGANCCTCCACCACAAAAGAAACAGAAGAATTATGA
AGATGAACTACCCAAGAAAGAAGAATTATCTTCTGAAGCTAAACATGTCC
ATGTTCATCTGGAGGACTCAGAGCTGTGGAAGAAATTCAAATCACTGACC
AATGAAATGATTGTGACTAAAAATGGAAGGCGTATGTTTCCCGTATTGAA
ATTGAACATTAGAGGTCTGGAACCCAATGCTATGTATTCCATCTTATTGG
ACTTCGTTGCTGTTGAAGACCACCGCTGGAAATACGTTAACGGTGAATGG
GTAGCCGGTGGAAAACCCGAACCCGCAACCACAAGTTCCGTATATATTCA
CCCGGACTCGCCAAATTTCGGAAATCATTGGATGAAAAATTCAGTCGCGT
TTACCAAAGTTAAACTGACCAATAAAATGAACGGCGAAGGACAGgtTATG
TTAAATTCTCTACACAAATATCAACCACGAATTCACGTCATCCGAGTCGG
TGCACCCGAAGGTGAACGTACGATATCCACACACACTTTCCCTGAAACGC
AATTCATCGCAGTCACCGCCTATCAAAACGAAGAAaTTACGCACTTGAAA
ATTCAATACAATCCGTTCGCCAAAGCCTTCCTAGACGCTAAAGAAAGATC
TGACCAAAAAGACATGCTATATGAACGTGATGCTCTCAATCAAATCGCTT
CAAACTACGGCTATTATCCATCCATGATGTCTCCAGTAACACGTGGTATC
GGTTGTGATAATTTACGGAACCACCGAGCGTCACCTTACCCATCACCATA
CCAACGGCCCGATCTTTTGTCCGGTTGTCAGCCGCCATATTATCGTGAAT
CAAGCCCACCCTTCATGAGTAATCAATGTATACAAAATAATACGTGGCCA
TTACATCACTTGAACTATAATTCAGCAATGACGTCAGCGCAATTGAAACC
TGACGACGTCATCAATCAAACGATGTCTGGTACAACGTTTACAGCTTCAA
CTTTCGGACAATTCCCAACCACGAAAGCAACTGGTGTCGACCCTAATGCA
AACCCTTGGGCACACTCGCTTGCATATTCAACGAACATATAGATGTATTG
CAAATTAGACGAGACTGAAATGACACCTAATAATTTCTCCATGAACACCA
TATTGACGTCAgagaaacaaaaaatggcagacGAACATCACGAAGAATTA
AAACTACAACATCTACAAATGGCACAACAACAAGCGGCACAACATCAACC
GCTAATGAGTTTACAACCACCACAAGGACAAATGGCGCCGCAACacccac
aacaacaacaacctaaATATACAACAGACTGCAATGATAATGAGGAGATT
CTCCAAGCGCCTCCACCACAGAAGAAACTGAAGAATTATGAAGATGAACT
ACCCAAGAAAGAAGANCCTCCACCACAAAAGAAACAGAAGAATTATGAAG
ATGAACTACCCAAGAAAGAAGAATTATCTTCTGAAGCTAAACATGTCCAT
GTTCATCTGGAGGACTCAGAGCTGTGGAAGAAATTCAAATCACTGACCAA
TGAAATGATTGTGACTAAAAATGGAAGGCGTATGTTTCCCGTATTGAAAT
TGAACATTAGAGGTCTGGAACCCAATGCTATGTATTCCATCTTATTGGAC
TTCGTTGCTGTTGAAGACCACCGCTGGAAATACGTTAACGGTGAATGGGT
AGCCGGTGGAAAACCCGAACCCGCAACCACAAGTTCCGTATATATTCACC
CGGACTCGCCAAATTTCGGAAATCATTGGATGAAAAATTCAGTCGCGTTT
ACCAAAGTTAAACTGACCAATAAAATGAACGGCGAAGGACAGgtTATGTT
AAATTCTCTACACAAATATCAACCACGAATTCACGTCATCCGAGTCGGTG
CACCCGAAGGTGAACGTACGATATCCACACACACTTTCCCTGAAACGCAA
TTCATCGCAGTCACCGCCTATCAAAACGAAGAAaTTACGCACTTGAAAAT
TCAATACAATCCGTTCGCCAAAGCCTTCCTAGACGCTAAAGAAAGATCTG
ACCAAAAAGACATGCTATATGAACGTGATGCTCTCAATCAAATCGCTTCA
AACTACGGCTATTATCCATCCATGATGTCTCCAGTAACACGTGGTATCGG
TTGTGATAATTTACGGAACCACCGAGCGTCACCTTACCCATCACCATACC
AACGGCCCGATCTTTTGTCCGGTTGTCAGCCGCCATATTATCGTGAATCA
AGCCCACCCTTCATGAGTAATCAATGTATACAAAATAATACGTGGCCATT
ACATCACTTGAACTATAATTCAGCAATGACGTCAGCGCAATTGAAACCTG
ACGACGTCATCAATCAAACGATGTCTGGTACAACGTTTACAGCTTCAACT
TTCGGACAATTCCCAACCACGAAAGCAACTGGTGTCGACCCTAATGCAAA
CCCTTGGGCACACTCGCTTGCATATTCAACGAACATATAGATGTATTGCA
AATTAGACGAGACTGAAATGACACCTAATAATTTCTCCATGAACACCATA
TTGACGTCAgagaaacaaaaaatggcagacGAACATCACGAAGAATTAAA
ACTACAACATCTACAAATGGCACAACAACAAGCGGCACAACATCAACCGC
TAATGAGTTTACAACCACCACAAGGACAAATGGCGCCGCAACacccacaa
caacaacaacctaaATATACAACAGACTGCAATGATAATGAGGAGATTCT
CCAAGCGCCTCCACCACAGAAGAAACTGAAGAATTATGAAGATGAACTAC
CCAAGAAAGAAGANCCTCCACCACAAAAGAAACAGAAGAATTATGAAGAT
GAACTACCCAAGAAAGAAGAATTATCTTCTGAAGCTAAACATGTCCATGT
TCATCTGGAGGACTCAGAGCTGTGGAAGAAATTCAAATCACTGACCAATG
AAATGATTGTGACTAAAAATGGAAGGCGTATGTTTCCCGTATTGAAATTG
AACATTAGAGGTCTGGAACCCAATGCTATGTATTCCATCTTATTGGACTT
CGTTGCTGTTGAAGACCACCGCTGGAAATACGTTAACGGTGAATGGGTAG
CCGGTGGAAAACCCGAACCCGCAACCACAAGTTCCGTATATATTCACCCG
GACTCGCCAAATTTCGGAAATCATTGGATGAAAAATTCAGTCGCGTTTAC
CAAAGTTAAACTGACCAATAAAATGAACGGCGAAGGACAGgtTATGTTAA
ATTCTCTACACAAATATCAACCACGAATTCACGTCATCCGAGTCGGTGCA
CCCGAAGGTGAACGTACGATATCCACACACACTTTCCCTGAAACGCAATT
CATCGCAGTCACCGCCTATCAAAACGAAGAAaTTACGCACTTGAAAATTC
AATACAATCCGTTCGCCAAAGCCTTCCTAGACGCTAAAGAAAGATCTGAC
CAAAAAGACATGCTATATGAACGTGATGCTCTCAATCAAATCGCTTCAAA
CTACGGCTATTATCCATCCATGATGTCTCCAGTAACACGTGGTATCGGTT
GTGATAATTTACGGAACCACCGAGCGTCACCTTACCCATCACCATACCAA
CGGCCCGATCTTTTGTCCGGTTGTCAGCCGCCATATTATCGTGAATCAAG
CCCACCCTTCATGAGTAATCAATGTATACAAAATAATACGTGGCCATTAC
ATCACTTGAACTATAATTCAGCAATGACGTCAGCGCAATTGAAACCTGAC
GACGTCATCAATCAAACGATGTCTGGTACAACGTTTACAGCTTCAACTTT
CGGACAATTCCCAACCACGAAAGCAACTGGTGTCGACCCTAATGCAAACC
CTTGGGCACACTCGCTTGCATATTCAACGAACATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044272XLOC_044272Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071217-proteinTCONS_00071217-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071217-exon-scaffold_60-1491911889:70946..72618TCONS_00071217-exon-scaffold_60-1491911889:70946..72618Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1510915933:70946..72618TCONS_00071217-exon-scaffold_60-1510915933:70946..72618Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1575043694:70946..72618TCONS_00071217-exon-scaffold_60-1575043694:70946..72618Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1491911889:73593..73857TCONS_00071217-exon-scaffold_60-1491911889:73593..73857Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1510915933:73593..73857TCONS_00071217-exon-scaffold_60-1510915933:73593..73857Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1575043694:73593..73857TCONS_00071217-exon-scaffold_60-1575043694:73593..73857Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1491911889:74761..74901TCONS_00071217-exon-scaffold_60-1491911889:74761..74901Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1510915933:74761..74901TCONS_00071217-exon-scaffold_60-1510915933:74761..74901Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1575043694:74761..74901TCONS_00071217-exon-scaffold_60-1575043694:74761..74901Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1491911889:75449..75510TCONS_00071217-exon-scaffold_60-1491911889:75449..75510Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1510915933:75449..75510TCONS_00071217-exon-scaffold_60-1510915933:75449..75510Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1575043694:75449..75510TCONS_00071217-exon-scaffold_60-1575043694:75449..75510Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1491911889:77569..77627TCONS_00071217-exon-scaffold_60-1491911889:77569..77627Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1510915933:77569..77627TCONS_00071217-exon-scaffold_60-1510915933:77569..77627Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1575043694:77569..77627TCONS_00071217-exon-scaffold_60-1575043694:77569..77627Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1491911889:77955..79359TCONS_00071217-exon-scaffold_60-1491911889:77955..79359Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1510915933:77955..79359TCONS_00071217-exon-scaffold_60-1510915933:77955..79359Clytia hemisphaericaexon
TCONS_00071217-exon-scaffold_60-1575043694:77955..79359TCONS_00071217-exon-scaffold_60-1575043694:77955..79359Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:70946..79359 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43664 1.03291 0.661684 0.509185 92.1887 62.1533 16.5389 17.9636 6.29938 21.6038 4.75227 4.82452 23.5951 26.1351 2.13622 3.65237 20.3928 21.3277 40.0245 36.6747 11.018 15.0375 4.00639 5.08919 9.45083 10.8262 2.49252 0.578815 2.43501 3.14246
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001699TF_T-box
IPR002070TF_Brachyury
IPR018186TF_T-box_CS
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
BLAST of TCONS_00071217 vs. Swiss-Prot (Human)
Match: BRAC (Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 1.111e-104
Identity = 172/280 (61.43%), Postives = 204/280 (72.86%), Query Frame = 1
Query: 1585 KHVHVHLEDSELWKKFKSLTNEMIVTKNGRRMFPVLKLNIRGLEPNAMYSILLDFVAVEDHRWKYVNGEWVAGGKPEPATTSSVYIHPDSPNFGNHWMKNSVAFTKVKLTNKMNGEGQVMLNSLHKYQPRIHVIRVGAPEGERTISTHTFPETQFIAVTAYQNEEITHLKIQYNPFAKAFLDAKERSDQKDMLYE-RDALNQIASNYGYY---------PSMMSPVTRGI-------GCD---NLRNHRASPYPSPYQRPDLLSGCQPPYYRESSPPFMS 2364
            + + V LE+SELW +FK LTNEMIVTKNGRRMFPVLK+N+ GL+PNAMYS LLDFVA ++HRWKYVNGEWV GGKPEP   S VYIHPDSPNFG HWMK  V+F+KVKLTNK+NG GQ+MLNSLHKY+PRIH++RVG P  +R I++H FPETQFIAVTAYQNEEIT LKI+YNPFAKAFLDAKERSD K+M+ E  D+     S +G+          P+   P   G         CD    LR+HR+SPYPSPY   +       P Y ++SP  +S
Sbjct:   40 RELRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGGP--QRMITSHCFPETQFIAVTAYQNEEITALKIKYNPFAKAFLDAKERSDHKEMMEEPGDSQQPGYSQWGWLLPGTSTLCPPANPHPQFGGALSLPSTHSCDRYPTLRSHRSSPYPSPYAHRN-----NSPTYSDNSPACLS 312          
The following BLAST results are available for this feature:
BLAST of TCONS_00071217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRAC1.111e-10461.43Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1[more]
back to top