TCONS_00071214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071214
Unique NameTCONS_00071214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071214 ID=TCONS_00071214|Name=TCONS_00071214|organism=Clytia hemisphaerica|type=transcript|length=1391bp
GAACGATACAGTGGCAAAGGTGGTGCTTGCGGATCCTTCAAGAAGCATGC
TAGTTTGAGGATGCGGTGAGACCGTGAACTTTTTCTGATCGTTATTTGAT
GCAATAATTGTGAAACGAGTTTCTCTATCGAACGCCAAAAAACAAATATA
GTAATATCATTATCTTCATTACACACGTCTTACACCTGTTACACCTGTAC
CATCAACATAAAAAAGATTCAATTACATGACCTATAAATGATGCGGTGAC
CTTTTTGAAAGCACTATCACTATACGAAGTTTTGATTGCAGTCACACAAG
ATGAAGACAATTTTGATTCTTTTGGCGTTGACAACTCTAGCTGCGGCACA
AGtgtgCGAGGACAAGCAATGGTACTGCCCGCTGTACGCCCGCATGGGAT
ATTGTAAAGCTGAACCACAAAAGATGAAGCAAGTGTGCCCTAAAAGTTGC
AACATGTGCGGCGGATCTGGTAGTGAAAAACCTGACGGAAGTGGATCAAA
ACCAAACCAATGTGGAATCCCTAAAGCAGGATCGCGAATCATCGGAGGTG
AGCGTGCCAAGAAGGATGCATGGCCCTGGCAAATCAGTTTGTATTACAAT
GGCCAGTTCATGTGTGGAGGATCCATCTTGTCACCAAGATGGGTGTTGAC
TGCTGCACATTGTGTAGATGGGTTCGATTACCGTGCTTATGAAGTCGTAT
TGGGTGACTACGATCGAAGTAATGGCGATGGGGACGAGCAGGTTTACAAA
GCCGTCCGTGCTTTCCATCATCCAGACTGGATGCACCCGTCAGAACTCAA
CAATGATATGGCCCTTATCGAACTTGACAGACCAGCTGTTTTCAACGATC
ACGTCCAACCTATCTGCTTGCCTGAGGCTGGTGAAGAACTAGCCCCTGGT
TCAGAATGTTACATCACAGGCTGGGGTCAACACACTGTTGGACAATCAGG
GCCACCAGCCATGGTTTTGAAGCAAGCCCTCTTGAAGACTGTGTCTCAAC
AAACATGCTACAACATGAACACACGTAATCTCGGTATTCGCGTTACTGAC
CACATGATCTGTGCCGGTCGTGGACCACGTGACCGAACATCTGGTTGTCA
TGGTGATTCAGGTGGTCCATTCGTTTGCAAAAACAAGGGCCGTTGGGTTT
TGTATGGCTCTGTCTCTTGGGGATCTGGTTACTGCAAGTCATCAGAAGCT
TACAGTGTTTTCGCTAAGATCAGCTCTCAAGTCAAATGGATCGAAACATA
CGCATATTAGATTGTATAATTATTGatctatttttttatcaatagtcccc
aattttttattaaataaaaaaaattcaagccaAAACAGTGATCAAATTTA
CGTGGTAAAAATTCCTATTTGTAACCGTCCGTGCTAAAACG
Run BLAST on NCBI

protein sequence of TCONS_00071214-protein

>TCONS_00071214-protein ID=TCONS_00071214-protein|Name=TCONS_00071214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MKTILILLALTTLAAAQVCEDKQWYCPLYARMGYCKAEPQKMKQVCPKSC
NMCGGSGSEKPDGSGSKPNQCGIPKAGSRIIGGERAKKDAWPWQISLYYN
GQFMCGGSILSPRWVLTAAHCVDGFDYRAYEVVLGDYDRSNGDGDEQVYK
AVRAFHHPDWMHPSELNNDMALIELDRPAVFNDHVQPICLPEAGEELAPG
SECYITGWGQHTVGQSGPPAMVLKQALLKTVSQQTCYNMNTRNLGIRVTD
HMICAGRGPRDRTSGCHGDSGGPFVCKNKGRWVLYGSVSWGSGYCKSSEA
YSVFAKISSQVKWIETYAY
Run BLAST on NCBI

transcript from alignment at scaffold_60:6498..9948+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071214 ID=TCONS_00071214|Name=TCONS_00071214|organism=Clytia hemisphaerica|type=transcript|length=3451bp|location=Sequence derived from alignment at scaffold_60:6498..9948+ (Clytia hemisphaerica)
GAACGATACAGTGGCAAAGGTGGTGCTTGCGGATCCTTCAAGAAGCATGC
TAGTTTGAGGATGCGGTGAGACCGTGAACTTTTTCTGATCGTTATTTGAT
GCAATAATTGTGAAACGAGTTTCTCTATCGAACGCCAAAAAACAAATATA
GTAATATCATTATCTTCATTACACACGTCTTACACCTGTTACACCTGTAC
CATCAACATAAAAAAGATTCAATTACATGACCTATAAATGATGCGGTGAC
CTTTTTGAAAGCACTATCACTATACGAAGTTTTGATTGCAGTCACACAAG
ATGAAGACAATTTTGATTCTTTTGGCGTTGACAACTCTAGCTGCGGCACA
AGGTATGTTTTTCATTGCCTAAAATCATCTCCTCTCATTGAGTTTTATGC
TTCCGAACCTGAAAATTAAGgatcaaataaataaagaaaTCGTATTACAC
CTGAAATACCtcagttttttcttataaaatggGAACAGGGTTAGAAcaat
tttaaattcaaagtgttaaaaaaataagaacagtcaaGCCTGATCAATGC
TTTCTAGAAAGAAGTGTTAAACCAACACCAGTGAGTGACGAATCTTTTTT
TTAGACTAAGATTCAAGCATCTaagaaaaatcattatttttttgcaacTT
CTTTTTATACAAGTGGGTTTAAAAGGGGAATTGATATTGGTCGTTGCGCT
CCctagcctttgttaagcttttCTTCGCTGGCTGAAAATAAACGCGAAGC
CATGGCGTTCTCTAGAATTAGAAAGCCATGCGCGAAGCTAAAAGATAGTA
CAGGCTATAAACGCCCCTATGTCAAGACCTGCCAGTGGGCTGCCCCGAGG
GCTGCCCGTATATGATCGAGAAAATAAACCTTTATTCAAAGGGTAAtgtg
taaaaatattttgaactgtACTAAGttgtattctttttttttcagtgtgC
GAGGACAAGCAATGGTACTGCCCGCTGTACGCCCGCATGGGATATTGTAA
AGCTGAACCACAAAAGATGAAGCAAGTGTGCCCTAAAAGTTGCAACATGT
GCGGTGAGTCCGCTTTATCTTTTCTAACCTCTCCATAGTGAAACCCTGCC
TCAATCGATTTCCTTGTCAGATTCAGTTCAGCCCCAGTGTGTACTACTCA
TTTTATTACCTTAGTCCCATCAAGGTAACAAAAAAGcaagtttctttcaa
aataataaaaaacgcCCATGGGCAGGGTGGTACAGGCTACATTAATTTTT
GCGCACGTCTTATTTTCGTGGAGAAAACCTCAATTTAAGAGGTGCAAGAA
AATAAAAGGTGCACAAAATTTAATGGTCTAATCTAGCTATTTTTAACACT
GACACTGAGTCAGTCCAAACATGCACGCAACGCGCAATCTTACATTGCCA
CAAATGATCCCTTGATCGAAGATACAATAGTTGAACAGAAATTCTATCAA
TTGCCTCATTACATTTCATGtaatattttctgtttttaaaGACTTCAGTG
AGCCTTGAGGTTTAAGGaaaattgacttcaaaaatttagtCGCCAACCCA
AAAAATATTTACTCACTTACACCCggttttttccccgataaggtgaTAAA
GTAAATACAATGATTATCTTTGTAGGCGGATCTGGTAGTGAAAAACCTGA
CGGAAGTGGATCAAAACCAAACCGTAAGTGTAATAATTTCATTGTCTCTG
TAACCCTGAAAAAAGTACAAATTAGATTTTTGCAATATGTTAGTAATTCA
TAAGGACATCCATCATATTTAGCGTAAACTGTGTCACAGAGCTCAAGATG
AGGTTAGTATTGATTGGATCTAAAGTTGATACTTTCATCACGTTACTTTA
CCTTAATATTTTAATTTGTTTCCAAAAGTATTTTCCATCttataaatttg
aaaagttgTTGTGTTGAGTTTCTCCTGAATTTTCCTCTTGTGCAGctata
tttttacttttctcttTANcttatgaatttgaaaagttgttGTGTTGAGT
TTCTCTTGAATTTTCCTCATTGTGCAGCTATATTTGTACTTTTCTCTTTC
AGAATGTGGAATCCCTAAAGCAGGATCGCGAATCATCGGAGGTGAGCGTG
CCAAGAAGGATGCATGGCCCTGGCAAATCAGTTTGTATTACAATGGCCAG
TTCATGTGTGGAGGATCCATCTTGTCACCAAGATGGGTGTTGACTGCTGC
ACATTGTGTAGATGGGTTCGATTACCGTGCTTATGAAGTCGTATTGGGTA
AGTGTTCTCTTTTCTCCTTTATCTAAGAGACCTAAAATAGCCCGGGGGGA
ATTACCATTGCCGTATGATAGGGATATTctaatgaggctcaaaaaaatgg
accctacgtttttcgaacattttgtcaaaatttgcggaaaaagtgaccct
gaatgggactgaaattccaataTTTGGaagtgaaaaggtaccctgactaG
GGTTCCTCTTTGCTCCTGCATGCTTTGCCATGACATTAAACAAGAGTTTA
ACttgtattgaaaaaaatatcaattttttctcaatgcccctCGCCTCTCT
TTGGCCTACCTTTGAATGGTGGTACACTCCTCTCCCGTCATTTGATTAGC
TCCTTGCTACTGCAATTTGTTTTTGAGGTAGTCTACATACAGTGCAAATA
AGCTCTATCTGATTTAATACGAAATGATGTTGTAGTTATTTTTCGATGCT
TGAACATTGTTCCCAGTAAATTATCATTAAGATTAGTAAAGATTTGTTGT
ATTTGCCACCCAGGTGACTACGATCGAAGTAATGGCGATGGGGACGAGCA
GGTTTACAAAGCCGTCCGTGCTTTCCATCATCCAGACTGGATGCACCCGT
CAGAACTCAACAATGATATGGCCCTTATCGAACTTGACAGACCAGCTGTT
TTCAACGATCACGTCCAACCTATCTGCTTGCCTGAGGCTGGTGAAGAACT
AGCCCCTGGTTCAGAATGTTACATCACAGGCTGGGGTCAACACACTGTTG
GACAATCAGGGCCACCAGCCATGGTTTTGAAGCAAGCCCTCTTGAAGACT
GTGTCTCAACAAACATGCTACAACATGAACACACGTAATCTCGGTATTCG
CGTTACTGACCACATGATCTGTGCCGGTCGTGGACCACGTGACCGAACAT
CTGGTTGTCATGGTGATTCAGGTGGTCCATTCGTTTGCAAAAACAAGGGC
CGTTGGGTTTTGTATGGCTCTGTCTCTTGGGGATCTGGTTACTGCAAGTC
ATCAGAAGCTTACAGTGTTTTCGCTAAGATCAGCTCTCAAGTCAAATGGA
TCGAAACATACGCATATTAGATTGTATAATTATTGatctatttttttatc
aatagtccccaattttttattaaataaaaaaaattcaagccaAAACAGTG
ATCAAATTTACGTGGTAAAAATTCCTATTTGTAACCGTCCGTGCTAAAAC
G

Coding sequence (CDS) from alignment at scaffold_60:6498..9948+

>TCONS_00071214 ID=TCONS_00071214|Name=TCONS_00071214|organism=Clytia hemisphaerica|type=CDS|length=4800bp|location=Sequence derived from alignment at scaffold_60:6498..9948+ (Clytia hemisphaerica)
ATGAAGACAATTTTGATTCTTTTGGCGTTGACAACTCTAGCTGCGGCACA
AGtgtgCGAGGACAAGCAATGGTACTGCCCGCTGTACGCCCGCATGGGAT
ATTGTAAAGCTGAACCACAAAAGATGAAGCAAGTGTGCCCTAAAAGTTGC
AACATGTGCGGCGGATCTGGTAGTGAAAAACCTGACGGAAGTGGATCAAA
ACCAAACCAATGTGGAATCCCTAAAGCAGGATCGCGAATCATCGGAGGTG
AGCGTGCCAAGAAGGATGCATGGCCCTGGCAAATCAGTTTGTATTACAAT
GGCCAGTTCATGTGTGGAGGATCCATCTTGTCACCAAGATGGGTGTTGAC
TGCTGCACATTGTGTAGATGGGTTCGATTACCGTGCTTATGAAGTCGTAT
TGGGTGACTACGATCGAAGTAATGGCGATGGGGACGAGCAGGTTTACAAA
GCCGTCCGTGCTTTCCATCATCCAGACTGGATGCACCCGTCAGAACTCAA
CAATGATATGGCCCTTATCGAACTTGACAGACCAGCTGTTTTCAACGATC
ACGTCCAACCTATCTGCTTGCCTGAGGCTGGTGAAGAACTAGCCCCTGGT
TCAGAATGTTACATCACAGGCTGGGGTCAACACACTGTTGGACAATCAGG
GCCACCAGCCATGGTTTTGAAGCAAGCCCTCTTGAAGACTGTGTCTCAAC
AAACATGCTACAACATGAACACACGTAATCTCGGTATTCGCGTTACTGAC
CACATGATCTGTGCCGGTCGTGGACCACGTGACCGAACATCTGGTTGTCA
TGGTGATTCAGGTGGTCCATTCGTTTGCAAAAACAAGGGCCGTTGGGTTT
TGTATGGCTCTGTCTCTTGGGGATCTGGTTACTGCAAGTCATCAGAAGCT
TACAGTGTTTTCGCTAAGATCAGCTCTCAAGTCAAATGGATCGAAACATA
CGCATATTAGATGAAGACAATTTTGATTCTTTTGGCGTTGACAACTCTAG
CTGCGGCACAAGtgtgCGAGGACAAGCAATGGTACTGCCCGCTGTACGCC
CGCATGGGATATTGTAAAGCTGAACCACAAAAGATGAAGCAAGTGTGCCC
TAAAAGTTGCAACATGTGCGGCGGATCTGGTAGTGAAAAACCTGACGGAA
GTGGATCAAAACCAAACCAATGTGGAATCCCTAAAGCAGGATCGCGAATC
ATCGGAGGTGAGCGTGCCAAGAAGGATGCATGGCCCTGGCAAATCAGTTT
GTATTACAATGGCCAGTTCATGTGTGGAGGATCCATCTTGTCACCAAGAT
GGGTGTTGACTGCTGCACATTGTGTAGATGGGTTCGATTACCGTGCTTAT
GAAGTCGTATTGGGTGACTACGATCGAAGTAATGGCGATGGGGACGAGCA
GGTTTACAAAGCCGTCCGTGCTTTCCATCATCCAGACTGGATGCACCCGT
CAGAACTCAACAATGATATGGCCCTTATCGAACTTGACAGACCAGCTGTT
TTCAACGATCACGTCCAACCTATCTGCTTGCCTGAGGCTGGTGAAGAACT
AGCCCCTGGTTCAGAATGTTACATCACAGGCTGGGGTCAACACACTGTTG
GACAATCAGGGCCACCAGCCATGGTTTTGAAGCAAGCCCTCTTGAAGACT
GTGTCTCAACAAACATGCTACAACATGAACACACGTAATCTCGGTATTCG
CGTTACTGACCACATGATCTGTGCCGGTCGTGGACCACGTGACCGAACAT
CTGGTTGTCATGGTGATTCAGGTGGTCCATTCGTTTGCAAAAACAAGGGC
CGTTGGGTTTTGTATGGCTCTGTCTCTTGGGGATCTGGTTACTGCAAGTC
ATCAGAAGCTTACAGTGTTTTCGCTAAGATCAGCTCTCAAGTCAAATGGA
TCGAAACATACGCATATTAGATGAAGACAATTTTGATTCTTTTGGCGTTG
ACAACTCTAGCTGCGGCACAAGtgtgCGAGGACAAGCAATGGTACTGCCC
GCTGTACGCCCGCATGGGATATTGTAAAGCTGAACCACAAAAGATGAAGC
AAGTGTGCCCTAAAAGTTGCAACATGTGCGGCGGATCTGGTAGTGAAAAA
CCTGACGGAAGTGGATCAAAACCAAACCAATGTGGAATCCCTAAAGCAGG
ATCGCGAATCATCGGAGGTGAGCGTGCCAAGAAGGATGCATGGCCCTGGC
AAATCAGTTTGTATTACAATGGCCAGTTCATGTGTGGAGGATCCATCTTG
TCACCAAGATGGGTGTTGACTGCTGCACATTGTGTAGATGGGTTCGATTA
CCGTGCTTATGAAGTCGTATTGGGTGACTACGATCGAAGTAATGGCGATG
GGGACGAGCAGGTTTACAAAGCCGTCCGTGCTTTCCATCATCCAGACTGG
ATGCACCCGTCAGAACTCAACAATGATATGGCCCTTATCGAACTTGACAG
ACCAGCTGTTTTCAACGATCACGTCCAACCTATCTGCTTGCCTGAGGCTG
GTGAAGAACTAGCCCCTGGTTCAGAATGTTACATCACAGGCTGGGGTCAA
CACACTGTTGGACAATCAGGGCCACCAGCCATGGTTTTGAAGCAAGCCCT
CTTGAAGACTGTGTCTCAACAAACATGCTACAACATGAACACACGTAATC
TCGGTATTCGCGTTACTGACCACATGATCTGTGCCGGTCGTGGACCACGT
GACCGAACATCTGGTTGTCATGGTGATTCAGGTGGTCCATTCGTTTGCAA
AAACAAGGGCCGTTGGGTTTTGTATGGCTCTGTCTCTTGGGGATCTGGTT
ACTGCAAGTCATCAGAAGCTTACAGTGTTTTCGCTAAGATCAGCTCTCAA
GTCAAATGGATCGAAACATACGCATATTAGATGAAGACAATTTTGATTCT
TTTGGCGTTGACAACTCTAGCTGCGGCACAAGtgtgCGAGGACAAGCAAT
GGTACTGCCCGCTGTACGCCCGCATGGGATATTGTAAAGCTGAACCACAA
AAGATGAAGCAAGTGTGCCCTAAAAGTTGCAACATGTGCGGCGGATCTGG
TAGTGAAAAACCTGACGGAAGTGGATCAAAACCAAACCAATGTGGAATCC
CTAAAGCAGGATCGCGAATCATCGGAGGTGAGCGTGCCAAGAAGGATGCA
TGGCCCTGGCAAATCAGTTTGTATTACAATGGCCAGTTCATGTGTGGAGG
ATCCATCTTGTCACCAAGATGGGTGTTGACTGCTGCACATTGTGTAGATG
GGTTCGATTACCGTGCTTATGAAGTCGTATTGGGTGACTACGATCGAAGT
AATGGCGATGGGGACGAGCAGGTTTACAAAGCCGTCCGTGCTTTCCATCA
TCCAGACTGGATGCACCCGTCAGAACTCAACAATGATATGGCCCTTATCG
AACTTGACAGACCAGCTGTTTTCAACGATCACGTCCAACCTATCTGCTTG
CCTGAGGCTGGTGAAGAACTAGCCCCTGGTTCAGAATGTTACATCACAGG
CTGGGGTCAACACACTGTTGGACAATCAGGGCCACCAGCCATGGTTTTGA
AGCAAGCCCTCTTGAAGACTGTGTCTCAACAAACATGCTACAACATGAAC
ACACGTAATCTCGGTATTCGCGTTACTGACCACATGATCTGTGCCGGTCG
TGGACCACGTGACCGAACATCTGGTTGTCATGGTGATTCAGGTGGTCCAT
TCGTTTGCAAAAACAAGGGCCGTTGGGTTTTGTATGGCTCTGTCTCTTGG
GGATCTGGTTACTGCAAGTCATCAGAAGCTTACAGTGTTTTCGCTAAGAT
CAGCTCTCAAGTCAAATGGATCGAAACATACGCATATTAGATGAAGACAA
TTTTGATTCTTTTGGCGTTGACAACTCTAGCTGCGGCACAAGtgtgCGAG
GACAAGCAATGGTACTGCCCGCTGTACGCCCGCATGGGATATTGTAAAGC
TGAACCACAAAAGATGAAGCAAGTGTGCCCTAAAAGTTGCAACATGTGCG
GCGGATCTGGTAGTGAAAAACCTGACGGAAGTGGATCAAAACCAAACCAA
TGTGGAATCCCTAAAGCAGGATCGCGAATCATCGGAGGTGAGCGTGCCAA
GAAGGATGCATGGCCCTGGCAAATCAGTTTGTATTACAATGGCCAGTTCA
TGTGTGGAGGATCCATCTTGTCACCAAGATGGGTGTTGACTGCTGCACAT
TGTGTAGATGGGTTCGATTACCGTGCTTATGAAGTCGTATTGGGTGACTA
CGATCGAAGTAATGGCGATGGGGACGAGCAGGTTTACAAAGCCGTCCGTG
CTTTCCATCATCCAGACTGGATGCACCCGTCAGAACTCAACAATGATATG
GCCCTTATCGAACTTGACAGACCAGCTGTTTTCAACGATCACGTCCAACC
TATCTGCTTGCCTGAGGCTGGTGAAGAACTAGCCCCTGGTTCAGAATGTT
ACATCACAGGCTGGGGTCAACACACTGTTGGACAATCAGGGCCACCAGCC
ATGGTTTTGAAGCAAGCCCTCTTGAAGACTGTGTCTCAACAAACATGCTA
CAACATGAACACACGTAATCTCGGTATTCGCGTTACTGACCACATGATCT
GTGCCGGTCGTGGACCACGTGACCGAACATCTGGTTGTCATGGTGATTCA
GGTGGTCCATTCGTTTGCAAAAACAAGGGCCGTTGGGTTTTGTATGGCTC
TGTCTCTTGGGGATCTGGTTACTGCAAGTCATCAGAAGCTTACAGTGTTT
TCGCTAAGATCAGCTCTCAAGTCAAATGGATCGAAACATACGCATATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044269XLOC_044269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071214-exon-scaffold_60-1491911889:6498..6849TCONS_00071214-exon-scaffold_60-1491911889:6498..6849Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1510915933:6498..6849TCONS_00071214-exon-scaffold_60-1510915933:6498..6849Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1575043694:6498..6849TCONS_00071214-exon-scaffold_60-1575043694:6498..6849Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1491911889:7443..7550TCONS_00071214-exon-scaffold_60-1491911889:7443..7550Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1510915933:7443..7550TCONS_00071214-exon-scaffold_60-1510915933:7443..7550Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1575043694:7443..7550TCONS_00071214-exon-scaffold_60-1575043694:7443..7550Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1491911889:8123..8170TCONS_00071214-exon-scaffold_60-1491911889:8123..8170Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1510915933:8123..8170TCONS_00071214-exon-scaffold_60-1510915933:8123..8170Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1575043694:8123..8170TCONS_00071214-exon-scaffold_60-1575043694:8123..8170Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1491911889:8550..8744TCONS_00071214-exon-scaffold_60-1491911889:8550..8744Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1510915933:8550..8744TCONS_00071214-exon-scaffold_60-1510915933:8550..8744Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1575043694:8550..8744TCONS_00071214-exon-scaffold_60-1575043694:8550..8744Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1491911889:9261..9948TCONS_00071214-exon-scaffold_60-1491911889:9261..9948Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1510915933:9261..9948TCONS_00071214-exon-scaffold_60-1510915933:9261..9948Clytia hemisphaericaexon
TCONS_00071214-exon-scaffold_60-1575043694:9261..9948TCONS_00071214-exon-scaffold_60-1575043694:9261..9948Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071214-proteinTCONS_00071214-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:6498..9948 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.750375	0.409771	0.74766	0.631723	0.728585	0.543752	9.02983	9.75418	21.1691	13.0331	29.9227	16.0318	1.99923	1.97254	0.648352	1.28243	26.7846	36.5022	0.54419	0.267456	191.617	197.319	71.33	100.451	76.214	57.0818	0.452722	0.614927	4.06435	5.11337
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR003582ShKT_dom
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR033116TRYPSIN_SER
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00071214 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 9.550e-48
Identity = 103/258 (39.92%), Postives = 136/258 (52.71%), Query Frame = 1 
Query:  511 CGIPKA------GSRIIGGERAKKDAWPWQISLYYNGQF-MCGGSILSPRWVLTAAHCVDGFDYRAYEVVLGDYDRSNGDGDEQVYKAVRAFHHPDWMHPSELNNDMALIELDRPAVFNDHVQPICLPEAGEELAPGSECYITGWGQHT-VGQSGPPAMVLKQALLKTVSQQTCYNMNTRNLGIRVTDHMICAGRGPRDRTSGCHGDSGGPFVCKNKGRWVLYGSVSWGSGYCKSSEAYSVFAKISSQVKWI-ETYAY 1257
            CGIP          RI+ GE A   +WPWQ+SL  +  F  CGGS++S  WV+TAAHC        + VVLG+YDRS+     QV    RA  HP W + + +NND+ L++L  PA +   + P+CL  + E L  G  C  TGWG+ + VG   P    L+Q  L  V+   C     +  G  +TD MICAG       S C GDSGGP VC+    WVL G VSWG+  C    A +V+ ++S    WI +  AY
Sbjct:   19 CGIPAIKPALSFSQRIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC--NVSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSW-NSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAH--LQQVALPLVTVNQCR----QYWGSSITDSMICAGGA---GASSCQGDSGGPLVCQKGNTWVLIGIVSWGTKNCN-VRAPAVYTRVSKFSTWINQVIAY 263
The following BLAST results are available for this feature:
BLAST of TCONS_00071214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRL9.550e-4839.92Chymotrypsin-like protease CTRL-1 OS=Homo sapiens ... [more]
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